CopciAB_542353
Coprinopsis cinerea A43mutB43mut pab1-1 #326

General data

Systematic name CopciAB_542353 Strain Coprinopsis cinerea Okayama 7
Standard name - Synonyms 542353
Uniprot id Functional description Protein kinase domain
Location scaffold_11:1292246..1294176 Strand +
Gene length (nt) 1931 Transcript length (nt) 1662
CDS length (nt) 771 Protein length (aa) 256

Reciprocal best hits in model fungi

Strain name Gene / Protein name
Aspergillus nidulans AN10895_srpkB

Orthologs in mushroom models

Strain name Gene / Protein name Pident E-value Bits
Ganoderma sp. 10597 SS1 v1.0 Gansp1_122993 51.4 1.026E-83 275
Agaricus bisporus var bisporus (H97) Agabi_varbisH97_2_212529 39.3 7.509E-57 197
Flammulina velutipes Flave_chr07AA00812 41.3 4.964E-55 192
Agaricus bisporus var. burnettii JB137-S8 Agabi_varbur_1_103042 39.4 9.17E-55 191
Agrocybe aegerita Agrae_CAA7268405 56.2 1.97E-48 173
Pleurotus eryngii ATCC 90797 Pleery1_1507390 35.7 3.377E-25 105

Expression

Name Summary Attribution Assay type
Carbon metabolism Transcriptional changes along alternative morphogenetic paths of C. cinerea Xie et al. 2020 RNA-Seq
Sample Mean cpm SD cpm Se of mean
sclerotia 0.533 0.246 0.142
oidia 0.9314 0.2707 0.1563
vegetative_mycelium 1.0699 0.1662 0.096
primordia 4.57 0.5535 0.3196
hyphal_knot 0.936 0.1988 0.1148
young_fruiting_body 0.7583 0.3223 0.1861
Complex carbon sources 1 (long incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control - glucose 0.8746 0.5415 0.3126
Wheat bran 0.9323 0.1432 0.0827
Horse manure 1.3024 0.5348 0.3088
Oak leaves 0.3841 0.3577 0.2065
Hay 1.0953 0.4472 0.2582
Corn stalk 1.2173 0.5138 0.2967
Pectine 0.7571 0.2785 0.1608
Microcrystalline cellulose 0.2399 0.2305 0.1331
Xylose 0.4812 0.0457 0.0264
Cellobiose 1.158 0.2447 0.1413
Lignin 0.4244 0.5677 0.3277
Apple peels 1.515 0.6275 0.3623
Coprinopsis challenged with bacteria Transcriptional response to Bacillus subtilis and Escherichia coli. Kombrink et al. 2018 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control 0.8959 0.165 0.0953
Bsubtilis 0.9182 0.2244 0.1296
Ecoli 0.4272 0.1186 0.0685
Early development 1 Time series expression profiling of basidiospore and oidium germination Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
BS 0h 0.0291 0.0504 0.0291
BS 4h 0.048 0.0426 0.0246
BS 8h 0.1211 0.0233 0.0134
BS 12h 0.0394 0.0683 0.0394
Oidia 0 h 0.3709 0.0161 0.0093
Oidia 18 h 0.0165 0.0287 0.0165
Sclerotia 0 0 0
Early development 2 Time series expression profiling of mycelial growth, light induction and fruiting body initiation. Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
DM 12h 0.7198 0.3606 0.2082
DM 36h 0.1208 0.1069 0.0617
DM 60h 0.5274 0.222 0.1282
DM 84h 0.3787 0.107 0.0618
DM 108h 0.4573 0.1513 0.0874
DM 132h 0.4647 0.2499 0.1443
DM 156hAE 0.3793 0.1452 0.0838
ELI1hAE 0.6174 0.6388 0.3688
ELI2hAE 1.3665 0.6791 0.3921
LI2hAE 0.3649 0.3612 0.2085
LI6hAE 0.1928 0.2372 0.1369
LI12hAE 0.0837 0.0726 0.0419
LI18hAE 0.8776 0.3658 0.2112
LI 24hAE 0.2868 0.2936 0.1695
DM 156hAM 0.2699 0.2509 0.1448
ELI1hAM 0.8793 0.2211 0.1276
ELI2hAM 0.9208 0.0758 0.0438
LI2hAM 0.8692 0.935 0.5398
LI6hAM 1.044 0.0563 0.0325
LI12hAM 0.4385 0.638 0.3684
LI18hAM 0.5538 0.5486 0.3167
LI 24hAM 0.4796 0.1202 0.0694
LI 24hHK 1.1425 0.4755 0.2745
L/D 6h 0.6411 0.1388 0.0801
L/D 12h 1.0224 0.8662 0.5001
L/D 18h 0.4472 0.2485 0.1435
L/D 24h 0.8644 0.0953 0.055
Fruiting body development RNA-Seq analysis of fruiting body development Krizsan et al. 2019 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Vegetative mycelium 1.1901 0.6582 0.38
Hyphal knots 1.0835 0.3501 0.2021
Primordium 1 1.8329 0.1557 0.0899
Primordium 2 1.8766 0.4498 0.2597
Young Fruiting body cap 1.2343 0.739 0.4267
Younf fruiting body gill 1.1956 0.7477 0.4317
Young fruiting body stipe 7.3051 2.9638 1.7112
Mature fruiting body cap_gill 0.0561 0.0504 0.0291
Mature fruiting body stipe 0.9349 0.3808 0.2199
Nitrogen sources (12h incubation) Expression profiling on diverse nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Complete medium - control 0.4177 0.3772 0.2178
NH4NO3 0.9949 0.6769 0.3908
Proline 0.3311 0.2618 0.1512
Tryptophan 1.0304 0.4905 0.2832
Isoleucin 0.3967 0.0852 0.0492
Arginine 0.3539 0.2217 0.128
Metionine 0.5943 0.1793 0.1035
NaNO3 0.4488 0.1716 0.0991
Plant biomass (12h incubation) Expression profiling on diverse plant biomasses as carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 0.4177 0.3772 0.2178
Citrus peel 0.4487 0.1002 0.0578
Poplar leaves 0.9195 0.2637 0.1522
Typha leaves 0.9762 0.1379 0.0796
Overwintered Salix leaves 0.9011 0.3122 0.1802
Reed flowering 0.468 0.4578 0.2643
Tigernut 0.3875 0.2747 0.1586
Energy cane 0.5331 0.4183 0.2415
Guar gum 1 0.2004 0.1157
Apple peels 0.974 0.5233 0.3022
Cellobiose 0.772 0.1213 0.0701
Corn stalk 1.1106 0.2974 0.1717
Horse manure 0.7806 0.3118 0.18
Lignin 0.5407 0.459 0.265
Microcrystalline cellulose 0.6435 0.3446 0.1989
Oak leaves 1.1409 0.1442 0.0832
Pectin esterified 0.7653 0.1455 0.084
Poplar sawdust 1.2791 0.247 0.1426
Wheat bran 0.8567 0.4158 0.2401
Chlamydomonas reinhardtii 0.853 0.0759 0.0438
Vertatryl alcohol 1.3764 0.1547 0.0893
Furfural 0.7155 0.6566 0.3791
Autoclaved mycelium 0.5368 0.1245 0.0719
Simple and complex carbon and nitrogen sources Expression profiling on diverse complex carbon and nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 1.2071 0.583 0.3366
Ribose 1.0726 0.4509 0.2603
Mannose 0.9991 0.044 0.0311
Fructose 0.6856 0.5028 0.2903
Arabinose 1.0185 0.3817 0.2204
Xylose 1.4219 0.2375 0.1371
Galacturonic acid 0.8629 0.7852 0.4533
Rhamnogalacturonan 0.9506 0.1209 0.0698
Pectin esterified 1.238 0.5145 0.297
Polygalacturonic acid 1.0791 0.1995 0.1152
Sodium acetate 0.7789 0.1267 0.0731
No nitrogen 0.9292 0.3139 0.1812
BSA 1.0892 0.467 0.2697
Glutamine 1.4471 0.2699 0.1558
No phosphate 0.9766 0.5015 0.2895
No carbon 1.0483 0.2468 0.1745
No sulphur 1.1105 0.8025 0.4633
Simple and complex carbon sources (12h incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 0.4177 0.3772 0.2178
Amylose 0.8859 0.1979 0.1142
Fucose 0.9559 0.0433 0.025
Galactose 1.0011 0.1797 0.1037
Lactose 0.5558 0.2018 0.1165
Maltose 0.6287 0.4721 0.2726
Mannitol 0.4926 0.1361 0.0786
Rhamnose 0.4447 0.0961 0.0555
Sorbitol 0.8789 0.2539 0.1466
Trehalose 0.7733 0.4074 0.2352
Glycerol 0.4467 0.2769 0.1599
Glucuronic acid 1.088 0.3986 0.2301
Arabinan 0.9653 0.672 0.388
Galactan 0.8954 0.4982 0.2876
Galactomannan 0.8457 0.0354 0.0204
Glucan 0.6639 0.2109 0.1217
Xylan 1.0946 0.4933 0.2848
Xyloglucan 1.5136 0.1417 0.0818
Arabinogalactan 1.5153 0.2554 0.1475
Pectin 0.3555 0.1966 0.1135
Rhamnogalacturonan 0.519 0.1153 0.0666
Polygalacturonic acid 0.6109 0.5025 0.2901
Mannan 0.7325 0.3297 0.1904
Amylopectin 0.5522 0.4652 0.2686
Inulin 1.0435 0.1741 0.1005
BSA 0.4384 0.2525 0.1458
Starvation induced by water agar transfer Expression profiling on starvation induced by transfer to water agar Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Control 0.5274 0.222 0.1282
2h WAT 0.9866 0.9676 0.5586
4h WAT 0.4159 0.1503 0.0868
8h WAT 0.7433 0.484 0.2795
16h WAT 0.6306 0.1403 0.081
24h WAT 0.6555 0.6857 0.3959
WAT hyphal knot -30h 1.1371 0.4821 0.2783
WAT hyphal knot -22h 0.6899 0.3919 0.2263
WAT hyphal knot -15h 0.4074 0.5046 0.2913
WAT hyphal knot -7.5h 0.0278 0.0482 0.0278
WAT hyphal knot 0.7842 0.4882 0.2819
WAT hyphal knot +7.5h 0.6143 0.5801 0.3349
Straw time series Time series expression profiling on straw as a carbon source Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 0.4763 0.3347 0.1932
Straw 3h 1.1193 0.1411 0.0814
Straw 6h 1.0233 0.5924 0.342
Straw 12h 1.073 0.2413 0.1393
Straw 24h 0.4471 0.0868 0.0501
Stress conditions 1 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 0.0995 0.0996 0.0575
Frost (-20C, 30min) 0.6454 0.1513 0.0874
Heat shock (47C, 2h) 1.0138 0.7488 0.4323
High CO2 0.4851 0.3512 0.2028
Drought (4% agar, 12h) 0.5759 0.5 0.2887
Oxidative (1mM H2O2, 3h) 0.9955 0.12 0.0693
Acidic (pH4, 3h) 0.1604 0.1742 0.1006
Alkaline (pH9, 3h) 0.288 0.4057 0.2342
Osmotic (sorbitol 2h) 0.1593 0.0974 0.0562
CongoRed (3h) 0.1156 0.015 0.0087
Cobalt chloride control 0.4563 0.0808 0.0467
Cobalt chloride 2mM 0.251 0.2178 0.1257
Stress conditions 2 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 1.1389 0.7272 0.4199
Cold stimulation 1.4105 0.5765 0.3328
Scratched surface 1.2706 0.4774 0.2756
Ca2+, 200mM, 24h 1.262 0.123 0.071
Cu2+, 2mM, 6h 0.799 0.2498 0.1442
Voriconazole 0.759 0.3023 0.1745
Trichoderma interaction, early 0.9706 0.4918 0.284
Trichoderma interaction 60h 0 0 0
Cobalt chloride 2mM repeat 0.4892 0.7336 0.4236
Hypoxia 0.1066 0.1846 0.1066
Hypoxia control 0.783 0.6123 0.3535
Protoplastation control 1.2269 0.0446 0.0316
Protoplastation 3.5h 0.1086 0.1535 0.1086
Protoplastation 1.5h 0.8137 1.1508 0.8137

General data

Systematic name -
Protein id CopciAB_542353.T0
Description Protein kinase domain

Annotation summary

0 100 200 256

Conserved domains

Analysis Signature accession Signature description InterPro Accession Start End
Pfam PF00069 Protein kinase domain IPR000719 9 251

SignalP

Prediction Start End Score
No records

Transmembrane domains

Domain n Start End Length
No records

InterPro

Accession Description
IPR000719 Protein kinase domain
IPR011009 Protein kinase-like domain superfamily

GO

Go id Term Ontology
GO:0004672 protein kinase activity MF
GO:0005524 ATP binding MF
GO:0006468 protein phosphorylation BP

KEGG

KEGG Orthology
No records

EggNOG

COG category Description
T Protein kinase domain

CAZy

Class Family Subfamily
No records

Transcription factor

Group
No records

Conservation of CopciAB_542353 across fungi.

Arrow shows the origin of gene family containing CopciAB_542353.

Protein

Sequence id CopciAB_542353.T0
Sequence >CopciAB_542353.T0
MGGLPVPLVKALVTYLLEAVDFLHSEAKVVHTDIQESNILLGLNPETATADLQKFEDEEIQNPSPRKINEERVTH
VSRQLVPPLYRYGPPTLCDFGEARFGEYDNMFDIQPYQYRAPEVIFQMGWDEKVDIWSIGVMLWDLIENKNLFKT
TGGPDNKDGNNYHVAHMIALLGPPPKDFLERTKETRLWNWFDKDTGAWKDEAEIPAQTLENTITRMEGEEKALFI
NFARRILKWKPEERCSAKELSEDPWIRSRFP
Length 256

Coding

Sequence id CopciAB_542353.T0
Sequence >CopciAB_542353.T0
ATGGGCGGCCTACCGGTCCCCCTGGTCAAAGCTCTCGTGACTTATCTCCTGGAAGCAGTCGACTTCCTCCACTCG
GAGGCAAAAGTTGTCCACACGGACATACAGGAAAGCAACATCCTCCTAGGCCTGAACCCAGAAACAGCCACGGCA
GACCTCCAAAAATTCGAGGATGAAGAAATCCAAAACCCGTCCCCTCGTAAGATCAATGAAGAACGCGTCACTCAC
GTCTCGAGACAGCTCGTTCCCCCTCTCTACCGCTACGGCCCGCCCACCCTATGCGATTTCGGCGAGGCAAGGTTC
GGGGAATACGACAACATGTTCGACATTCAGCCATACCAGTACAGAGCCCCCGAGGTCATCTTTCAGATGGGCTGG
GATGAGAAAGTTGACATTTGGAGTATCGGGGTGATGCTCTGGGATTTGATCGAGAACAAAAACCTCTTCAAGACT
ACAGGTGGTCCAGATAACAAGGATGGCAACAACTACCACGTGGCGCACATGATTGCGCTGCTCGGACCTCCGCCC
AAAGACTTCCTGGAGCGAACCAAGGAGACTCGTTTGTGGAATTGGTTTGACAAAGACACGGGCGCTTGGAAAGAT
GAAGCAGAGATTCCAGCCCAAACCCTTGAAAATACCATCACACGCATGGAAGGCGAAGAGAAGGCACTCTTCATC
AACTTTGCGCGACGAATACTAAAGTGGAAGCCAGAAGAACGTTGTAGTGCAAAGGAGCTGAGCGAGGACCCGTGG
ATTCGCTCAAGATTCCCTTGA
Length 771

Transcript

Sequence id CopciAB_542353.T0
Sequence >CopciAB_542353.T0
GCACTGCGCCGTTTGGCTCGTGCCCCATCGAAACCAAGAGCGTTTCCTACATCCGGTTTCGGTATCATTCCCAAC
TCCACCGCCATCGAAGAGGAGACATGGGGGTGGTACAAGCCATAAAATTTCTATCCTGCTCGCATTGGCGAGACA
CTCAAATCACAATACCAGATCGTCGGAAAGCTTGGGTACGGCACTTGGGGCACGGCATGGTTGCGTCGCGACTTG
GTGAATCACCAGCACGTCACGGTAAAGATAGGGACTCCTCGTGCTTTGGAGAACGAACTCCGTGTCTTGAAACAC
CTCAAAAGCCTAAACTCCAAGCATTTCGGCGCCTCCGCTACCCGTCCCCTTATCGATGAATTCGCCATCGAAGGG
GCGGATGGGGTCTTTCGCTGTGCTGTGCACCCTCCATTAGCCGCACCCATCTCTACATTCAGGAAAGCCCTTCTC
AGAACGGGCATGGGCGGCCTACCGGTCCCCCTGGTCAAAGCTCTCGTGACTTATCTCCTGGAAGCAGTCGACTTC
CTCCACTCGGAGGCAAAAGTTGTCCACACGGACATACAGGAAAGCAACATCCTCCTAGGCCTGAACCCAGAAACA
GCCACGGCAGACCTCCAAAAATTCGAGGATGAAGAAATCCAAAACCCGTCCCCTCGTAAGATCAATGAAGAACGC
GTCACTCACGTCTCGAGACAGCTCGTTCCCCCTCTCTACCGCTACGGCCCGCCCACCCTATGCGATTTCGGCGAG
GCAAGGTTCGGGGAATACGACAACATGTTCGACATTCAGCCATACCAGTACAGAGCCCCCGAGGTCATCTTTCAG
ATGGGCTGGGATGAGAAAGTTGACATTTGGAGTATCGGGGTGATGCTCTGGGATTTGATCGAGAACAAAAACCTC
TTCAAGACTACAGGTGGTCCAGATAACAAGGATGGCAACAACTACCACGTGGCGCACATGATTGCGCTGCTCGGA
CCTCCGCCCAAAGACTTCCTGGAGCGAACCAAGGAGACTCGTTTGTGGAATTGGTTTGACAAAGACACGGGCGCT
TGGAAAGATGAAGCAGAGATTCCAGCCCAAACCCTTGAAAATACCATCACACGCATGGAAGGCGAAGAGAAGGCA
CTCTTCATCAACTTTGCGCGACGAATACTAAAGTGGAAGCCAGAAGAACGTTGTAGTGCAAAGGAGCTGAGCGAG
GACCCGTGGATTCGCTCAAGATTCCCTTGATACTGGTGGTCTCATCCGTGTCTGGAGACGCTGAGGGGATTTTCA
CGAAAAAACCTCGTGGAAAGCGAGAAGGGTACTAAAGACGCAGAGGGAACAGGCGGACCGCACTCAAAAGCTGTG
TGGTACGAGGACCTCACAGGGAACGGTGCGTTCCAGTTCCCTGTTCTCGTCATTTGTTATCGCTGTTAGACTAGC
CAGCCCCGGTGTCGAACCCACCTACCTCCCACCTCCGCAAGAACGATGAAGTCACACACGTTCTCCGCTTTCGAA
GGACCTCCAAGGATCCCAGTAGACTCTCCCTCCTCTCAATTTTATCTTTATCTCCTACTCAACTCACAGCTCAAT
ATATACAATCCCTACTAAACTCACCTGTACCATACACACACTGTAACTAGCCCCACTCAAATCATCCCGGTCTTC
TGATCACCGAAA
Length 1662

Gene

Sequence id CopciAB_542353.T0
Sequence >CopciAB_542353.T0
GCACTGCGCCGTTTGGCTCGTGCCCCATCGAAACCAAGAGCGTTTCCTACATCCGGTTTCGGTATCATTCCCAAC
TCCACCGCCATCGAAGAGGAGACATGGGGGTGGTACAAGCCATAAAATTTCTATCCTGCTCGCATTGGCGAGACA
CTCAAATCACAATACCAGATCGTCGGAAAGCTTGGGTACGGCACTTGGGGCACGGCATGGTTGCGTCGCGACTTG
GTGTAGGTTGAATTCCACATCAGTCTCATAGGTACTCAACATCATGATTCAACGCTATATCACAGGAATCACCAG
CACGTCACGGTAAAGATAGGGACTCCTCGTGCTTTGGAGAACGAACTCCGTGTCTTGAAACACCTCAAAAGCCTA
AACTCCAAGCATTTCGGCGCCTCCGCTACCCGTCCCCTTATCGATGAATTCGCCATCGAAGGGGCGGATGGGGTC
TTTCGCTGTGCTGTGCACCCTCCATTAGCCGCACCCATCTCTACATTCAGGAAAGCCCTTCTCAGAACGGGCATG
GGCGGCCTACCGGTCCCCCTGGTCAAAGCTCTCGTGACTTATCTCCTGGAAGCAGTCGACTTCCTCCACTCGGAG
GCAAAAGTTGTCCACACGGGTGTGTTCCTCCATCATGACATCCCGTCAATTCGATATTGGTGCTGACACTCCCAC
CATTCGCAGACATACAGGAAAGCAACATCCTCCTAGGCCTGAACCCAGAAACAGCCACGGCAGACCTCCAAAAAT
TCGAGGATGAAGAAATCCAAAACCCGTCCCCTCGTAAGATCAATGAAGAACGCGTCACTCACGTCTCGAGACAGC
TCGTTCCCCCTCTCTACCGCTACGGCCCGCCCACCCTATGCGATTTCGGCGAGGCAAGGTTCGGGGAATACGACA
ACATGTTCGACATTCAGCCATACCAGTACAGAGCCCCCGAGGTCATCTTTCAGATGGGCTGGGATGAGAAAGTTG
ACATTTGGAGTATCGGGGTGATGGTTCGTTTCTTACACCACACTGTATATGTTTTCGTATTTTGCTCAAAGGTCG
AAACGTAGCTCTGGGATTTGATCGAGAACAAAAACCTCTTCAAGACTACAGGTGGTCCAGATAACAAGGATGGCA
ACAACTACCACGTGGCGCACATGATTGCGCTGCTCGGACCTCCGCCCAAAGACTTCCTGGAGCGAACCAAGGAGA
CTCGTTTGTGGAATTGGTTTGACAAAGACACGGGTTAGTGGCATTTCCGCTGCTTACTACTACCTGAAGCATCTT
GGTCGAGTCCTGACATCGTCCTATCTATCTTCTTCTCAGGCGCTTGGAAAGATGAAGCAGAGATTCCAGCCCAAA
CCCTTGAAAATACCATCACACGCATGGAAGGCGAAGAGAAGGCACTCTTCATCAACTTTGCGCGACGAATACTAA
AGTGGAAGCCAGAAGAACGTTGTAGTGCAAAGGAGCTGAGCGAGGACCCGTGGATTCGCTCAAGATTCCCTTGAT
ACTGGTGGTCTCATCCGTGTCTGGAGACGCTGAGGGGATTTTCACGAAAAAACCTCGTGGAAAGCGAGAAGGGTA
CTAAAGACGCAGAGGGAACAGGCGGACCGCACTCAAAAGCTGTGTGGTACGAGGACCTCACAGGGAACGGTGCGT
TCCAGTTCCCTGTTCTCGTCATTTGTTATCGCTGTTAGACTAGCCAGCCCCGGTGTCGAACCCACCTACCTCCCA
CCTCCGCAAGAACGATGAAGTCACACACGTTCTCCGCTTTCGAAGGACCTCCAAGGATCCCAGTAGACTCTCCCT
CCTCTCAATTTTATCTTTATCTCCTACTCAACTCACAGCTCAATATATACAATCCCTACTAAACTCACCTGTACC
ATACACACACTGTAACTAGCCCCACTCAAATCATCCCGGTCTTCTGATCACCGAAA
Length 1931