CopciAB_544744
Coprinopsis cinerea A43mutB43mut pab1-1 #326

General data

Systematic name CopciAB_544744 Strain Coprinopsis cinerea Okayama 7
Standard name - Synonyms 544744
Uniprot id Functional description
Location scaffold_7:2303097..2304309 Strand -
Gene length (nt) 1213 Transcript length (nt) 1099
CDS length (nt) 810 Protein length (aa) 269

Reciprocal best hits in model fungi

Strain name Gene / Protein name

Orthologs in mushroom models

Strain name Gene / Protein name Pident E-value Bits
Lentinula edodes B17 Lened_B_1_1_16380 30.4 3.415E-28 114

Expression

Name Summary Attribution Assay type
Carbon metabolism Transcriptional changes along alternative morphogenetic paths of C. cinerea Xie et al. 2020 RNA-Seq
Sample Mean cpm SD cpm Se of mean
sclerotia 4.9357 3.3044 1.9078
oidia 2.3899 1.6629 0.9601
vegetative_mycelium 1.9232 0.6678 0.3855
primordia 2.8023 0.7671 0.4429
hyphal_knot 5.74 1.7073 0.9857
young_fruiting_body 0.582 0.4468 0.258
Complex carbon sources 1 (long incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control - glucose 2.004 1.3406 0.774
Wheat bran 16.6733 4.0846 2.3582
Horse manure 10.4779 2.9651 1.7119
Oak leaves 10.7716 5.0561 2.9191
Hay 6.897 0.8248 0.4762
Corn stalk 11.248 3.334 1.9249
Pectine 15.6759 1.8118 1.046
Microcrystalline cellulose 10.1842 2.5186 1.4541
Xylose 7.3391 1.6836 0.972
Cellobiose 1.4477 0.4948 0.2856
Lignin 2.2471 1.7287 0.9981
Apple peels 1.7486 0.3677 0.2123
Coprinopsis challenged with bacteria Transcriptional response to Bacillus subtilis and Escherichia coli. Kombrink et al. 2018 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control 3.146 0.7542 0.4354
Bsubtilis 0.8123 0.1581 0.0913
Ecoli 0.3219 0.2522 0.1456
Early development 1 Time series expression profiling of basidiospore and oidium germination Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
BS 0h 0 0 0
BS 4h 0 0 0
BS 8h 0.102 0.0447 0.0258
BS 12h 0.0953 0.107 0.0618
Oidia 0 h 0 0 0
Oidia 18 h 0.0856 0.1482 0.0856
Sclerotia 0.599 0.538 0.3106
Early development 2 Time series expression profiling of mycelial growth, light induction and fruiting body initiation. Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
DM 12h 1.7431 0.2085 0.1204
DM 36h 0.3419 0.2271 0.1311
DM 60h 0.957 0.6319 0.3648
DM 84h 2.2096 0.2948 0.1702
DM 108h 1.8937 0.7173 0.4141
DM 132h 1.6124 0.4954 0.286
DM 156hAE 8.8846 3.9115 2.2583
ELI1hAE 2.5243 1.222 0.7055
ELI2hAE 2.1403 1.4501 0.8372
LI2hAE 2.2094 0.9205 0.5314
LI6hAE 5.1541 2.1779 1.2574
LI12hAE 3.6357 1.155 0.6668
LI18hAE 4.8683 2.4404 1.409
LI 24hAE 7.0399 3.7319 2.1546
DM 156hAM 2.4071 0.4518 0.2608
ELI1hAM 0.3734 0.1823 0.1052
ELI2hAM 0.5927 0.3718 0.2146
LI2hAM 0.4485 0.3743 0.2161
LI6hAM 2.393 1.3792 0.7963
LI12hAM 2.3746 0.2083 0.1202
LI18hAM 2.317 1.5844 0.9148
LI 24hAM 2.5856 0.8617 0.4975
LI 24hHK 3.0694 0.1375 0.0794
L/D 6h 6.0948 1.5275 0.8819
L/D 12h 5.699 0.2651 0.1531
L/D 18h 1.8255 1.0953 0.6324
L/D 24h 1.6019 0.5435 0.3138
Fruiting body development RNA-Seq analysis of fruiting body development Krizsan et al. 2019 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Vegetative mycelium 6.0486 1.0574 0.6105
Hyphal knots 7.3268 2.5486 1.4714
Primordium 1 3.9235 2.1067 1.2163
Primordium 2 6.4923 1.1123 0.6422
Young Fruiting body cap 0.3404 0.1937 0.1118
Younf fruiting body gill 3.9222 2.0601 1.1894
Young fruiting body stipe 2.723 2.7191 1.5699
Mature fruiting body cap_gill 0.404 0.2963 0.1711
Mature fruiting body stipe 2.8158 0.1 0.0577
Nitrogen sources (12h incubation) Expression profiling on diverse nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Complete medium - control 4.2148 0.6951 0.4013
NH4NO3 2.5525 0.9005 0.5199
Proline 2.1191 1.3551 0.7824
Tryptophan 1.8725 1.6209 0.9358
Isoleucin 1.0622 0.7305 0.4217
Arginine 2.8638 1.144 0.6605
Metionine 0.7871 0.4555 0.263
NaNO3 1.264 0.5393 0.3113
Plant biomass (12h incubation) Expression profiling on diverse plant biomasses as carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 4.2148 0.6951 0.4013
Citrus peel 0.8833 0.2395 0.1383
Poplar leaves 2.1825 0.7023 0.4055
Typha leaves 2.7779 0.8066 0.4657
Overwintered Salix leaves 3.7174 0.4989 0.288
Reed flowering 3.0007 1.5559 0.8983
Tigernut 5.033 1.8489 1.0675
Energy cane 3.9588 1.7381 1.0035
Guar gum 3.8569 0.7937 0.4582
Apple peels 2.2584 1.0331 0.5964
Cellobiose 3.6354 0.4482 0.2588
Corn stalk 7.1575 2.7343 1.5787
Horse manure 9.2383 0.4503 0.26
Lignin 2.2005 1.2089 0.698
Microcrystalline cellulose 4.0216 0.9064 0.5233
Oak leaves 8.4922 1.5965 0.9217
Pectin esterified 7.0855 1.5987 0.923
Poplar sawdust 5.4446 2.3833 1.376
Wheat bran 10.7013 1.4847 0.8572
Chlamydomonas reinhardtii 4.6189 1.2738 0.7354
Vertatryl alcohol 0.1075 0.1028 0.0594
Furfural 0.1027 0.0786 0.0454
Autoclaved mycelium 2.5252 0.7249 0.4185
Simple and complex carbon and nitrogen sources Expression profiling on diverse complex carbon and nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 27.3585 3.867 2.2326
Ribose 14.8747 2.158 1.2459
Mannose 16.5137 2.8713 2.0303
Fructose 19.9458 4.2198 2.4363
Arabinose 17.3644 1.3431 0.7754
Xylose 17.7653 4.086 2.3591
Galacturonic acid 14.7334 1.0373 0.5989
Rhamnogalacturonan 19.4995 1.2463 0.7196
Pectin esterified 15.7887 2.5531 1.474
Polygalacturonic acid 19.8115 1.1777 0.6799
Sodium acetate 11.2542 1.8748 1.0824
No nitrogen 8.4569 0.9502 0.5486
BSA 14.6172 1.6391 0.9463
Glutamine 13.8602 2.7195 1.5701
No phosphate 9.0843 1.6396 0.9466
No carbon 9.1571 0.313 0.2213
No sulphur 9.4292 1.1271 0.6508
Simple and complex carbon sources (12h incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 4.2148 0.6951 0.4013
Amylose 6.6518 1.2827 0.7406
Fucose 5.9157 0.501 0.2893
Galactose 4.788 0.5564 0.3213
Lactose 2.2589 0.4548 0.2626
Maltose 2.8616 1.0023 0.5787
Mannitol 1.6893 0.6969 0.4024
Rhamnose 3.7601 2.0131 1.1623
Sorbitol 5.3182 1.937 1.1183
Trehalose 4.3088 1.9059 1.1004
Glycerol 4.386 1.0621 0.6132
Glucuronic acid 8.127 0.7252 0.4187
Arabinan 4.0318 0.7448 0.43
Galactan 1.9476 0.7606 0.4391
Galactomannan 5.7992 0.7954 0.4592
Glucan 2.7763 0.9342 0.5394
Xylan 4.9206 0.2228 0.1286
Xyloglucan 4.9237 2.0369 1.176
Arabinogalactan 4.6732 0.6352 0.3667
Pectin 3.8123 0.7454 0.4303
Rhamnogalacturonan 3.0329 0.8697 0.5021
Polygalacturonic acid 6.9431 4.4942 2.5947
Mannan 4.8372 0.3069 0.1772
Amylopectin 3.1973 1.5935 0.92
Inulin 3.4291 1.5403 0.8893
BSA 2.3903 0.401 0.2315
Starvation induced by water agar transfer Expression profiling on starvation induced by transfer to water agar Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Control 0.957 0.6319 0.3648
2h WAT 1.296 0.7001 0.4042
4h WAT 0.8884 0.4317 0.2493
8h WAT 0.9972 0.5974 0.3449
16h WAT 1.1263 0.1037 0.0599
24h WAT 2.0225 1.2684 0.7323
WAT hyphal knot -30h 0.8016 0.7689 0.4439
WAT hyphal knot -22h 0.6254 0.4383 0.253
WAT hyphal knot -15h 0.7471 0.682 0.3937
WAT hyphal knot -7.5h 0.8656 0.7506 0.4334
WAT hyphal knot 0.9151 0.2898 0.1673
WAT hyphal knot +7.5h 2.1132 0.6216 0.3589
Straw time series Time series expression profiling on straw as a carbon source Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 1.9958 1.6176 0.9339
Straw 3h 1.4505 0.5864 0.3385
Straw 6h 6.1396 4.6877 2.7064
Straw 12h 10.5619 5.2094 3.0077
Straw 24h 9.4492 10.2873 5.9393
Stress conditions 1 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 0.3182 0.2016 0.1164
Frost (-20C, 30min) 0.8999 0.3734 0.2156
Heat shock (47C, 2h) 0.2954 0.5116 0.2954
High CO2 0.6766 0.2982 0.1722
Drought (4% agar, 12h) 0.8158 0.6056 0.3497
Oxidative (1mM H2O2, 3h) 0.5665 0.1143 0.066
Acidic (pH4, 3h) 0.4184 0.5955 0.3438
Alkaline (pH9, 3h) 0.8995 0.2677 0.1545
Osmotic (sorbitol 2h) 0.1182 0.1105 0.0638
CongoRed (3h) 0.1933 0.0751 0.0433
Cobalt chloride control 2.3719 2.0278 1.1707
Cobalt chloride 2mM 0.933 0.2237 0.1291
Stress conditions 2 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 3.8939 2.9593 1.7085
Cold stimulation 2.6589 3.2641 1.8845
Scratched surface 0.2892 0.1674 0.0967
Ca2+, 200mM, 24h 1.0173 0.2816 0.1626
Cu2+, 2mM, 6h 0.6831 1.0327 0.5962
Voriconazole 1.6404 1.4312 0.8263
Trichoderma interaction, early 0.4154 0.2948 0.1702
Trichoderma interaction 60h 0 0 0
Cobalt chloride 2mM repeat 1.1938 0.3537 0.2042
Hypoxia 0.2724 0.3692 0.2132
Hypoxia control 0.7718 0.7539 0.4353
Protoplastation control 3.882 0.8796 0.622
Protoplastation 3.5h 0.9187 1.2992 0.9187
Protoplastation 1.5h 3.7529 0.0765 0.0541

General data

Systematic name -
Protein id CopciAB_544744.T0
Description

Annotation summary

0 100 200 269

Conserved domains

Analysis Signature accession Signature description InterPro Accession Start End
Pfam PF17667 Fungal protein kinase IPR040976 4 138

SignalP

Prediction Start End Score
No records

Transmembrane domains

Domain n Start End Length
No records

InterPro

Accession Description
IPR000719 Protein kinase domain
IPR008266 Tyrosine-protein kinase, active site
IPR040976 Fungal-type protein kinase
IPR011009 Protein kinase-like domain superfamily

GO

Go id Term Ontology
GO:0004672 protein kinase activity MF
GO:0005524 ATP binding MF
GO:0006468 protein phosphorylation BP

KEGG

KEGG Orthology
No records

EggNOG

COG category Description
No records

CAZy

Class Family Subfamily
No records

Transcription factor

Group
No records

Conservation of CopciAB_544744 across fungi.

Arrow shows the origin of gene family containing CopciAB_544744.

Protein

Sequence id CopciAB_544744.T0
Sequence >CopciAB_544744.T0
MKNDTRFRRRIVLKRSCSTFYEVPSLNVACKIGKDIVQGLNLLREAGFIHRDISGGNCLFYLDEETKRRCGKIAD
LEYCKEYLKIGAHDPISGTKDFMAVEVEKRSFFAPSGRLPFKPEFHRHYLHDLESLYWLMVWCAFVLVPDGIQQV
DVEMWEKAFFELFPLDTSENISRKAEMLYCPGELSYVLDKSGWDSDTLNVLEDLFDLGNDFRNEYVRLQKIPQEE
SGGRRWAQEHFNADIYDKFSKVLDSVGSRLPPGKQQTMWKIRGS
Length 269

Coding

Sequence id CopciAB_544744.T0
Sequence >CopciAB_544744.T0
ATGAAGAACGACACTCGATTTCGGCGGCGCATAGTCCTCAAGCGCAGTTGTTCGACGTTCTACGAAGTCCCGAGT
TTGAATGTAGCTTGCAAGATAGGCAAAGACATTGTACAAGGCTTGAACCTCCTGCGAGAAGCAGGATTCATTCAC
CGAGACATCAGCGGCGGCAACTGTCTGTTTTATCTCGACGAAGAAACCAAACGTCGCTGCGGGAAGATTGCTGAT
CTGGAATACTGCAAGGAATATCTTAAAATCGGAGCTCATGATCCTATCTCGGGCACGAAAGATTTCATGGCCGTC
GAAGTGGAGAAGCGATCATTTTTTGCACCATCTGGTCGTCTACCATTCAAGCCGGAGTTTCATCGACACTACTTG
CATGACCTGGAGTCACTCTACTGGCTCATGGTCTGGTGCGCCTTTGTCCTGGTCCCCGACGGCATTCAGCAAGTC
GATGTGGAAATGTGGGAGAAAGCGTTCTTCGAGTTGTTCCCATTGGACACATCGGAGAACATCAGTAGGAAGGCG
GAAATGCTTTACTGCCCTGGTGAACTGTCGTATGTGCTGGATAAATCTGGATGGGATTCTGACACTCTCAATGTC
TTGGAGGACCTTTTCGACCTCGGGAATGACTTCCGGAACGAATACGTCCGGCTTCAGAAGATACCCCAGGAGGAA
AGCGGCGGTCGTCGATGGGCTCAGGAACACTTTAATGCCGACATATATGACAAGTTCTCCAAAGTCTTGGACAGT
GTTGGAAGCCGTCTTCCCCCCGGCAAACAGCAGACCATGTGGAAGATCCGTGGGTCCTGA
Length 810

Transcript

Sequence id CopciAB_544744.T0
Sequence >CopciAB_544744.T0
AGCGAAGAGTTGCCAGGCGATACAGGACCGATCTTTCACGATTATCCTGCACTGTTGATGAAGAACGACACTCGA
TTTCGGCGGCGCATAGTCCTCAAGCGCAGTTGTTCGACGTTCTACGAAGTCCCGAGTTTGAATGTAGCTTGCAAG
ATAGGCAAAGACATTGTACAAGGCTTGAACCTCCTGCGAGAAGCAGGATTCATTCACCGAGACATCAGCGGCGGC
AACTGTCTGTTTTATCTCGACGAAGAAACCAAACGTCGCTGCGGGAAGATTGCTGATCTGGAATACTGCAAGGAA
TATCTTAAAATCGGAGCTCATGATCCTATCTCGGGCACGAAAGATTTCATGGCCGTCGAAGTGGAGAAGCGATCA
TTTTTTGCACCATCTGGTCGTCTACCATTCAAGCCGGAGTTTCATCGACACTACTTGCATGACCTGGAGTCACTC
TACTGGCTCATGGTCTGGTGCGCCTTTGTCCTGGTCCCCGACGGCATTCAGCAAGTCGATGTGGAAATGTGGGAG
AAAGCGTTCTTCGAGTTGTTCCCATTGGACACATCGGAGAACATCAGTAGGAAGGCGGAAATGCTTTACTGCCCT
GGTGAACTGTCGTATGTGCTGGATAAATCTGGATGGGATTCTGACACTCTCAATGTCTTGGAGGACCTTTTCGAC
CTCGGGAATGACTTCCGGAACGAATACGTCCGGCTTCAGAAGATACCCCAGGAGGAAAGCGGCGGTCGTCGATGG
GCTCAGGAACACTTTAATGCCGACATATATGACAAGTTCTCCAAAGTCTTGGACAGTGTTGGAAGCCGTCTTCCC
CCCGGCAAACAGCAGACCATGTGGAAGATCCGTGGGTCCTGATTGACGCTTGAATAGCCCACCTATAATTGTCCT
CTCAAAGTCCGCCCGTGTCGACATCGCGGCGCAGATTACTAGAGATTAGGGCCACTTTTTTGAATAGCCATCTTC
AGTAGATTTTACTCGAGTAGTGCCCATCATAGTAACTAAAGTCCGTCTGGGCCGACGGCAAGATGTGCTGTATAA
CAGTATTAGGAAGAGTGTTGTTAAAAATGCATTCATTCATTCCTCCACA
Length 1099

Gene

Sequence id CopciAB_544744.T0
Sequence >CopciAB_544744.T0
AGCGAAGAGTTGCCAGGCGATACAGGACCGATCTTTCACGATTATCCTGCACTGTTGATGAAGAACGACACTCGA
TTTCGGCGGCGCATAGTCCTCAAGCGCAGTTGTTCGACGTTCTACGAAGTCCCGAGTTTGAATGTAGCTTGCAAG
ATAGGCAAAGACATTGTACAAGGTAAAGAAAGTCGACGATTTGAAACGCTAGACGGGACACTCACGAAAGTCTCT
CTTCAGGCTTGAACCTCCTGCGAGAAGCAGGATTCATTCACCGAGACATCAGCGGCGGCAACTGTCTGTTTTATC
TCGACGAAGAAACCAAACGTCGCTGCGGGAAGATTGCTGATCTGGAATACTGCAAGGAATATCTTAAAATCGGAG
CTCATGATCCTATCTCGGTGAGGGTCAAAATCGCCTTGGGTCAATGCCGAATATACTGATGTGCGGCACCAGGGC
ACGAAAGATTTCATGGCCGTCGAAGTGGAGAAGCGATCATTTTTTGCACCATCTGGTCGTCTACCATTCAAGCCG
GAGTTTCATCGACACTACTTGCATGACCTGGAGTCACTCTACTGGCTCATGGTCTGGTGCGCCTTTGTCCTGGTC
CCCGACGGCATTCAGCAAGTCGATGTGGAAATGTGGGAGAAAGCGTTCTTCGAGTTGTTCCCATTGGACACATCG
GAGAACATCAGTAGGAAGGCGGAAATGCTTTACTGCCCTGGTGAACTGTCGTATGTGCTGGATAAATCTGGATGG
GATTCTGACACTCTCAATGTCTTGGAGGACCTTTTCGACCTCGGGAATGACTTCCGGAACGAATACGTCCGGCTT
CAGAAGATACCCCAGGAGGAAAGCGGCGGTCGTCGATGGGCTCAGGAACACTTTAATGCCGACATATATGACAAG
TTCTCCAAAGTCTTGGACAGTGTTGGAAGCCGTCTTCCCCCCGGCAAACAGCAGACCATGTGGAAGATCCGTGGG
TCCTGATTGACGCTTGAATAGCCCACCTATAATTGTCCTCTCAAAGTCCGCCCGTGTCGACATCGCGGCGCAGAT
TACTAGAGATTAGGGCCACTTTTTTGAATAGCCATCTTCAGTAGATTTTACTCGAGTAGTGCCCATCATAGTAAC
TAAAGTCCGTCTGGGCCGACGGCAAGATGTGCTGTATAACAGTATTAGGAAGAGTGTTGTTAAAAATGCATTCAT
TCATTCCTCCACA
Length 1213