CopciAB_545150
Coprinopsis cinerea A43mutB43mut pab1-1 #326

General data

Systematic name CopciAB_545150 Strain Coprinopsis cinerea Okayama 7
Standard name - Synonyms 545150
Uniprot id Functional description
Location scaffold_10:1077931..1078477 Strand -
Gene length (nt) 547 Transcript length (nt) 496
CDS length (nt) 390 Protein length (aa) 129

Reciprocal best hits in model fungi

Strain name Gene / Protein name

Orthologs in mushroom models

Strain name Gene / Protein name Pident E-value Bits
0

Expression

Name Summary Attribution Assay type
Carbon metabolism Transcriptional changes along alternative morphogenetic paths of C. cinerea Xie et al. 2020 RNA-Seq
Sample Mean cpm SD cpm Se of mean
sclerotia 1.1004 0.3078 0.1777
oidia 0.9479 0.3709 0.2142
vegetative_mycelium 0.9885 0.554 0.3199
primordia 0.5461 0.1701 0.0982
hyphal_knot 1.7152 0.5812 0.3356
young_fruiting_body 0.4827 0.4542 0.2622
Complex carbon sources 1 (long incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control - glucose 1.2591 0.0802 0.0463
Wheat bran 2.9363 1.1704 0.6757
Horse manure 0.9093 0.2647 0.1528
Oak leaves 0.8105 0.4333 0.2502
Hay 1.5942 0.5261 0.3037
Corn stalk 0.8986 0.6489 0.3747
Pectine 0.7607 0.2603 0.1503
Microcrystalline cellulose 0.8244 0.1819 0.105
Xylose 0.8812 0.1689 0.0975
Cellobiose 1.2972 0.3853 0.2225
Lignin 0.5656 0.3676 0.2122
Apple peels 1.3617 0.2235 0.1291
Coprinopsis challenged with bacteria Transcriptional response to Bacillus subtilis and Escherichia coli. Kombrink et al. 2018 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control 1.2097 0.328 0.1894
Bsubtilis 0.9638 0.2729 0.1575
Ecoli 0.509 0.2939 0.1697
Early development 1 Time series expression profiling of basidiospore and oidium germination Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
BS 0h 0.5283 0.3448 0.1991
BS 4h 0.507 0.3025 0.1747
BS 8h 0.354 0.1557 0.0899
BS 12h 0.7598 0.4585 0.2647
Oidia 0 h 0.1687 0.1987 0.1147
Oidia 18 h 0.7932 0.8703 0.5025
Sclerotia 2.4832 0.4742 0.2738
Early development 2 Time series expression profiling of mycelial growth, light induction and fruiting body initiation. Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
DM 12h 1.3089 0.7999 0.4618
DM 36h 0.5978 0.3123 0.1803
DM 60h 1.0635 0.3896 0.225
DM 84h 2.1733 0.9756 0.5632
DM 108h 1.3489 0.8902 0.514
DM 132h 1.1755 0.3924 0.2265
DM 156hAE 2.688 0.9353 0.54
ELI1hAE 0.2686 0.1855 0.1071
ELI2hAE 0.1588 0.1386 0.08
LI2hAE 0.2928 0.255 0.1472
LI6hAE 1.4514 0.5475 0.3161
LI12hAE 1.3239 0.873 0.504
LI18hAE 1.309 1.2706 0.7336
LI 24hAE 2.2155 1.0291 0.5942
DM 156hAM 1.7497 0.5233 0.3021
ELI1hAM 0.2471 0.187 0.108
ELI2hAM 0.0982 0.1702 0.0982
LI2hAM 0.3216 0.3856 0.2226
LI6hAM 0.3275 0.4922 0.2842
LI12hAM 1.0023 0.6484 0.3743
LI18hAM 0.5533 0.1758 0.1015
LI 24hAM 2.7132 1.1116 0.6418
LI 24hHK 1.2178 0.5672 0.3275
L/D 6h 0.6412 0.0082 0.0047
L/D 12h 1.2068 0.3032 0.175
L/D 18h 0.9569 0.596 0.3441
L/D 24h 0.1907 0.1676 0.0968
Fruiting body development RNA-Seq analysis of fruiting body development Krizsan et al. 2019 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Vegetative mycelium 2.5304 0.395 0.2281
Hyphal knots 1.7392 1.2278 0.7089
Primordium 1 1.1842 0.211 0.1218
Primordium 2 1.1343 0.2169 0.1252
Young Fruiting body cap 0.2787 0.0724 0.0418
Younf fruiting body gill 0.8299 0.4553 0.2629
Young fruiting body stipe 0.1083 0.0978 0.0565
Mature fruiting body cap_gill 0.5512 0.5033 0.2906
Mature fruiting body stipe 0.5474 0.2035 0.1175
Nitrogen sources (12h incubation) Expression profiling on diverse nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Complete medium - control 1.3212 0.2572 0.1485
NH4NO3 1.0838 0.1508 0.0871
Proline 0.788 0.2459 0.142
Tryptophan 0.4752 0.1337 0.0772
Isoleucin 0.6414 0.3669 0.2118
Arginine 0.4356 0.2343 0.1353
Metionine 0.3967 0.0506 0.0292
NaNO3 0.48 0.0909 0.0525
Plant biomass (12h incubation) Expression profiling on diverse plant biomasses as carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 1.3212 0.2572 0.1485
Citrus peel 0.4336 0.2238 0.1292
Poplar leaves 1.1789 0.4473 0.2582
Typha leaves 0.7461 0.1407 0.0813
Overwintered Salix leaves 0.9143 0.3991 0.2304
Reed flowering 0.9396 0.388 0.224
Tigernut 0.9266 0.0387 0.0224
Energy cane 1.0474 0.1312 0.0758
Guar gum 0.8316 0.1432 0.0827
Apple peels 0.8018 0.156 0.0901
Cellobiose 0.5817 0.2289 0.1321
Corn stalk 1.173 0.6852 0.3956
Horse manure 1.6473 0.5739 0.3313
Lignin 0.7161 1.0673 0.6162
Microcrystalline cellulose 0.7838 0.1988 0.1148
Oak leaves 1.1793 0.2289 0.1321
Pectin esterified 3.4112 0.3674 0.2121
Poplar sawdust 1.8169 1.065 0.6149
Wheat bran 1.6814 0.3778 0.2181
Chlamydomonas reinhardtii 1.0832 0.0202 0.0117
Vertatryl alcohol 0.0588 0.1018 0.0588
Furfural 1.0664 0.603 0.3481
Autoclaved mycelium 0.61 0.0634 0.0366
Simple and complex carbon and nitrogen sources Expression profiling on diverse complex carbon and nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 4.6093 0.1379 0.0796
Ribose 4.3531 0.4126 0.2382
Mannose 3.7173 0.5708 0.4036
Fructose 3.933 0.7811 0.451
Arabinose 3.869 0.2042 0.1179
Xylose 2.898 0.7485 0.4322
Galacturonic acid 4.8584 0.6207 0.3584
Rhamnogalacturonan 5.157 1.1051 0.638
Pectin esterified 3.7958 0.5366 0.3098
Polygalacturonic acid 4.3408 0.4446 0.2567
Sodium acetate 3.6878 0.5778 0.3336
No nitrogen 1.7556 0.4649 0.2684
BSA 3.2137 0.9079 0.5242
Glutamine 3.498 0.3855 0.2226
No phosphate 3.4358 0.4547 0.2625
No carbon 4.2447 0.6482 0.4584
No sulphur 1.8298 0.8713 0.503
Simple and complex carbon sources (12h incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 1.3212 0.2572 0.1485
Amylose 1.7642 0.312 0.1802
Fucose 1.917 0.8771 0.5064
Galactose 1.568 0.1924 0.1111
Lactose 1.1122 0.0382 0.0221
Maltose 1.0106 0.2719 0.157
Mannitol 0.9196 0.3091 0.1785
Rhamnose 1.5047 0.6687 0.3861
Sorbitol 1.9711 0.6648 0.3838
Trehalose 1.6566 1.2171 0.7027
Glycerol 0.8977 0.2046 0.1181
Glucuronic acid 2.1468 0.0452 0.0261
Arabinan 2.1131 0.6368 0.3677
Galactan 1.1256 0.5227 0.3018
Galactomannan 2.3179 0.9607 0.5547
Glucan 1.1889 0.3045 0.1758
Xylan 1.6137 0.7127 0.4115
Xyloglucan 1.4827 0.1944 0.1122
Arabinogalactan 1.5786 0.1375 0.0794
Pectin 2.0315 1.0787 0.6228
Rhamnogalacturonan 1.1012 0.8818 0.5091
Polygalacturonic acid 1.3073 0.1445 0.0834
Mannan 1.5104 0.4121 0.2379
Amylopectin 1.7625 0.541 0.3124
Inulin 1.043 0.344 0.1986
BSA 0.4444 0.0637 0.0368
Starvation induced by water agar transfer Expression profiling on starvation induced by transfer to water agar Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Control 1.0635 0.3896 0.225
2h WAT 1.5792 0.1567 0.0905
4h WAT 1.1084 0.8386 0.4841
8h WAT 1.7231 1.0535 0.6082
16h WAT 1.9973 0.4641 0.2679
24h WAT 1.1992 1.0065 0.5811
WAT hyphal knot -30h 0.5831 0.4378 0.2528
WAT hyphal knot -22h 1.2898 0.5203 0.3004
WAT hyphal knot -15h 0.624 0.1059 0.0611
WAT hyphal knot -7.5h 1.2186 0.5881 0.3396
WAT hyphal knot 0.4999 0.1812 0.1046
WAT hyphal knot +7.5h 2.3522 0.9823 0.5672
Straw time series Time series expression profiling on straw as a carbon source Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 0.5668 0.4135 0.2388
Straw 3h 2.071 1.1352 0.6554
Straw 6h 1.7473 1.2626 0.729
Straw 12h 1.2578 0.4206 0.2429
Straw 24h 1.0991 0.1151 0.0665
Stress conditions 1 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 0.4178 0.0714 0.0412
Frost (-20C, 30min) 1.6937 0.5602 0.3234
Heat shock (47C, 2h) 0.211 0.3654 0.211
High CO2 1.3887 0.1861 0.1075
Drought (4% agar, 12h) 1.0936 0.7363 0.4251
Oxidative (1mM H2O2, 3h) 0.8787 0.1638 0.0946
Acidic (pH4, 3h) 0.305 0.4214 0.2433
Alkaline (pH9, 3h) 0.7589 0.1217 0.0703
Osmotic (sorbitol 2h) 0.7463 0.3296 0.1903
CongoRed (3h) 0.6417 0.1792 0.1035
Cobalt chloride control 1.0091 0.1758 0.1015
Cobalt chloride 2mM 0.5835 0.0886 0.0511
Stress conditions 2 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 0.6848 0.5262 0.3038
Cold stimulation 1.8526 1.9563 1.1295
Scratched surface 0.8317 0.3275 0.1891
Ca2+, 200mM, 24h 1.9542 1.8843 1.0879
Cu2+, 2mM, 6h 0.7368 0.7973 0.4603
Voriconazole 0.5213 0.204 0.1178
Trichoderma interaction, early 1.1516 0.6443 0.372
Trichoderma interaction 60h 0 0 0
Cobalt chloride 2mM repeat 0.6655 0.4942 0.2853
Hypoxia 1.1266 0.5172 0.2986
Hypoxia control 2.3705 1.0432 0.6023
Protoplastation control 1.7237 0.7472 0.5283
Protoplastation 3.5h 2.0355 2.8787 2.0355
Protoplastation 1.5h 1.1096 1.5693 1.1096

General data

Systematic name -
Protein id CopciAB_545150.T0
Description

Annotation summary

Conserved domains

Analysis Signature accession Signature description InterPro Accession Start End
No records

SignalP

Prediction Start End Score
No records

Transmembrane domains

Domain n Start End Length
No records

InterPro

Accession Description
IPR011009 Protein kinase-like domain superfamily

GO

Go id Term Ontology
No records

KEGG

KEGG Orthology
No records

EggNOG

COG category Description
No records

CAZy

Class Family Subfamily
No records

Transcription factor

Group
No records

Conservation of CopciAB_545150 across fungi.

Arrow shows the origin of gene family containing CopciAB_545150.

Protein

Sequence id CopciAB_545150.T0
Sequence >CopciAB_545150.T0
MKEVAFCIGEIPEDWKKHWESDDWLKKFEVSREAADQKWGKLVSQLACGDDDAKLVLREFFDIIRWILKIDPRER
PSAEEVLKHPWLSVDREDEDIDPKTVMQPRTEPVRRVLAHSGPPPEDDDYYRDL
Length 129

Coding

Sequence id CopciAB_545150.T0
Sequence >CopciAB_545150.T0
ATGAAAGAAGTCGCTTTTTGCATCGGGGAAATTCCTGAAGACTGGAAAAAGCATTGGGAATCGGATGATTGGCTT
AAGAAGTTCGAGGTATCTCGCGAGGCTGCCGATCAAAAGTGGGGAAAACTGGTATCGCAGCTCGCGTGTGGAGAC
GATGATGCAAAGCTAGTCCTCCGCGAGTTCTTCGATATCATTCGTTGGATATTGAAAATCGATCCAAGAGAACGT
CCGAGTGCTGAGGAAGTATTAAAGCATCCTTGGCTCAGCGTGGACAGGGAGGACGAAGACATCGACCCGAAGACG
GTTATGCAGCCGCGAACCGAACCTGTACGGAGGGTACTGGCACATAGCGGTCCGCCTCCAGAGGACGACGATTAT
TACCGAGATTTGTAA
Length 390

Transcript

Sequence id CopciAB_545150.T0
Sequence >CopciAB_545150.T0
GGAACTCTTTCACACCTATTCCCCAGACGAATCGTACATGAAAGAAGTCGCTTTTTGCATCGGGGAAATTCCTGA
AGACTGGAAAAAGCATTGGGAATCGGATGATTGGCTTAAGAAGTTCGAGGTATCTCGCGAGGCTGCCGATCAAAA
GTGGGGAAAACTGGTATCGCAGCTCGCGTGTGGAGACGATGATGCAAAGCTAGTCCTCCGCGAGTTCTTCGATAT
CATTCGTTGGATATTGAAAATCGATCCAAGAGAACGTCCGAGTGCTGAGGAAGTATTAAAGCATCCTTGGCTCAG
CGTGGACAGGGAGGACGAAGACATCGACCCGAAGACGGTTATGCAGCCGCGAACCGAACCTGTACGGAGGGTACT
GGCACATAGCGGTCCGCCTCCAGAGGACGACGATTATTACCGAGATTTGTAACTCCTGTCTGGGTCCCCGCATGT
CTGTAGATTCCAGCACGGAATTGAGTACACACTCTTCTTGTGCTTC
Length 496

Gene

Sequence id CopciAB_545150.T0
Sequence >CopciAB_545150.T0
GGAACTCTTTCACACCTATTCCCCAGACGAATCGTACATGAAAGAAGTCGCTTTTTGCATCGGGGAAATTCCTGA
AGACTGGAAAAAGCATTGGGAATCGGATGATTGGCTTAAGAAGTTCGGTAAGCAGCACTTCAATGAAGGAGGCGT
TGTGATGATTGACTCAGTCCCAGAGGTATCTCGCGAGGCTGCCGATCAAAAGTGGGGAAAACTGGTATCGCAGCT
CGCGTGTGGAGACGATGATGCAAAGCTAGTCCTCCGCGAGTTCTTCGATATCATTCGTTGGATATTGAAAATCGA
TCCAAGAGAACGTCCGAGTGCTGAGGAAGTATTAAAGCATCCTTGGCTCAGCGTGGACAGGGAGGACGAAGACAT
CGACCCGAAGACGGTTATGCAGCCGCGAACCGAACCTGTACGGAGGGTACTGGCACATAGCGGTCCGCCTCCAGA
GGACGACGATTATTACCGAGATTTGTAACTCCTGTCTGGGTCCCCGCATGTCTGTAGATTCCAGCACGGAATTGA
GTACACACTCTTCTTGTGCTTC
Length 547