CopciAB_547154
Coprinopsis cinerea A43mutB43mut pab1-1 #326

General data

Systematic name CopciAB_547154 Strain Coprinopsis cinerea Okayama 7
Standard name - Synonyms 547154
Uniprot id Functional description other AgaK1 protein kinase
Location scaffold_3:943895..945701 Strand +
Gene length (nt) 1807 Transcript length (nt) 1464
CDS length (nt) 1107 Protein length (aa) 368

Reciprocal best hits in model fungi

Strain name Gene / Protein name

Orthologs in mushroom models

Strain name Gene / Protein name Pident E-value Bits
Auricularia subglabra Aurde3_1_1307226 27.9 1.228E-22 101
Lentinula edodes W1-26 v1.0 Lentinedodes1_20524 27.9 7.101E-22 98

Expression

Name Summary Attribution Assay type
Carbon metabolism Transcriptional changes along alternative morphogenetic paths of C. cinerea Xie et al. 2020 RNA-Seq
Sample Mean cpm SD cpm Se of mean
sclerotia 0.8367 0.2808 0.1621
oidia 2.4612 0.1827 0.1055
vegetative_mycelium 2.1725 0.4849 0.2799
primordia 5.4954 0.8124 0.469
hyphal_knot 1.5655 0.8062 0.4655
young_fruiting_body 0.8909 0.3036 0.1753
Complex carbon sources 1 (long incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control - glucose 1.1088 0.513 0.2962
Wheat bran 1.1185 0.4668 0.2695
Horse manure 0.5316 0.0282 0.0163
Oak leaves 1.1339 0.6003 0.3466
Hay 0.778 0.1545 0.0892
Corn stalk 0.9283 0.1211 0.0699
Pectine 0.4707 0.0627 0.0362
Microcrystalline cellulose 0.2853 0.097 0.056
Xylose 0.7748 0.038 0.022
Cellobiose 1.2098 0.3481 0.201
Lignin 0.3204 0.1945 0.1123
Apple peels 1.0756 0.2994 0.1728
Coprinopsis challenged with bacteria Transcriptional response to Bacillus subtilis and Escherichia coli. Kombrink et al. 2018 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control 1.1185 0.4155 0.2399
Bsubtilis 0.8359 0.2083 0.1203
Ecoli 0.3265 0.0376 0.0217
Early development 1 Time series expression profiling of basidiospore and oidium germination Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
BS 0h 0.1097 0.0955 0.0552
BS 4h 0.048 0.0426 0.0246
BS 8h 0.0677 0.1173 0.0677
BS 12h 0.4823 0.7716 0.4455
Oidia 0 h 0.5806 0.1689 0.0975
Oidia 18 h 0.3093 0.2724 0.1573
Sclerotia 0.063 0.1091 0.063
Early development 2 Time series expression profiling of mycelial growth, light induction and fruiting body initiation. Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
DM 12h 0.4931 0.0509 0.0294
DM 36h 0.2415 0.0671 0.0387
DM 60h 0.6593 0.0624 0.036
DM 84h 1.0616 0.6083 0.3512
DM 108h 1.2079 0.6296 0.3635
DM 132h 1.3475 0.7553 0.4361
DM 156hAE 1.4785 0.2918 0.1685
ELI1hAE 0.1756 0.1524 0.088
ELI2hAE 0.2207 0.0503 0.029
LI2hAE 0.324 0.3819 0.2205
LI6hAE 0.2056 0.0513 0.0296
LI12hAE 0.3164 0.1797 0.1037
LI18hAE 0.2115 0.1716 0.0991
LI 24hAE 0.4924 0.2147 0.124
DM 156hAM 0.8981 0.9328 0.5385
ELI1hAM 0.4608 0.3252 0.1878
ELI2hAM 0.2913 0.2524 0.1457
LI2hAM 0.2449 0.2729 0.1576
LI6hAM 0.3213 0.3493 0.2017
LI12hAM 0.5055 0.4983 0.2877
LI18hAM 0.3351 0.3507 0.2025
LI 24hAM 0.0701 0.0357 0.0206
LI 24hHK 0.5312 0.2974 0.1717
L/D 6h 4.8726 2.1581 1.246
L/D 12h 6.4435 2.5225 1.4563
L/D 18h 1.6232 1.0718 0.6188
L/D 24h 0.7036 0.133 0.0768
Fruiting body development RNA-Seq analysis of fruiting body development Krizsan et al. 2019 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Vegetative mycelium 1.0116 0.1898 0.1096
Hyphal knots 2.8389 0.4671 0.2697
Primordium 1 2.4324 0.7812 0.4511
Primordium 2 3.9163 0.6162 0.3558
Young Fruiting body cap 2.6237 2.0017 1.1557
Younf fruiting body gill 1.9186 1.0359 0.5981
Young fruiting body stipe 3.1366 1.2002 0.6929
Mature fruiting body cap_gill 4.5065 2.5774 1.4881
Mature fruiting body stipe 72.9122 6.0315 3.4823
Nitrogen sources (12h incubation) Expression profiling on diverse nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Complete medium - control 1.4961 0.4968 0.2868
NH4NO3 0.7723 0.2052 0.1185
Proline 0.5913 0.3975 0.2295
Tryptophan 0.7767 0.1699 0.0981
Isoleucin 0.6181 0.2465 0.1423
Arginine 0.5516 0.1432 0.0827
Metionine 0.6397 0.4275 0.2468
NaNO3 0.9591 0.2303 0.1329
Plant biomass (12h incubation) Expression profiling on diverse plant biomasses as carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 1.4961 0.4968 0.2868
Citrus peel 1.148 0.2159 0.1247
Poplar leaves 1.1843 0.6542 0.3777
Typha leaves 0.9861 0.4994 0.2883
Overwintered Salix leaves 0.516 0.2844 0.1642
Reed flowering 1.0019 0.3576 0.2065
Tigernut 0.8933 0.3601 0.2079
Energy cane 0.5737 0.0666 0.0384
Guar gum 1.8146 0.6405 0.3698
Apple peels 0.5385 0.405 0.2338
Cellobiose 0.5734 0.3066 0.177
Corn stalk 1.2313 0.6331 0.3655
Horse manure 1.0018 0.4834 0.2791
Lignin 0.7883 0.2587 0.1493
Microcrystalline cellulose 0.4341 0.2483 0.1434
Oak leaves 1.0934 0.707 0.4082
Pectin esterified 0.9571 0.4455 0.2572
Poplar sawdust 2.1621 1.5963 0.9216
Wheat bran 1.4799 0.959 0.5537
Chlamydomonas reinhardtii 1.6671 0.2304 0.133
Vertatryl alcohol 0.6299 0.1892 0.1092
Furfural 0.8871 0.743 0.429
Autoclaved mycelium 0.4965 0.3996 0.2307
Simple and complex carbon and nitrogen sources Expression profiling on diverse complex carbon and nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 1.1982 0.4988 0.288
Ribose 1.2285 0.0706 0.0407
Mannose 0.5468 0.0361 0.0255
Fructose 0.8579 0.2621 0.1513
Arabinose 1.099 0.393 0.2269
Xylose 0.7748 0.1675 0.0967
Galacturonic acid 2.0469 0.3814 0.2202
Rhamnogalacturonan 1.6557 0.7722 0.4458
Pectin esterified 1.4831 0.4599 0.2655
Polygalacturonic acid 1.5867 0.5508 0.318
Sodium acetate 1.0541 0.3177 0.1834
No nitrogen 0.9586 0.4053 0.234
BSA 1.0456 0.5506 0.3179
Glutamine 1.4471 0.6073 0.3506
No phosphate 0.6744 0.2932 0.1693
No carbon 1.8122 0.5675 0.4013
No sulphur 1.2005 0.1693 0.0978
Simple and complex carbon sources (12h incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 1.4961 0.4968 0.2868
Amylose 3.1718 0.6848 0.3954
Fucose 3.0498 0.3467 0.2001
Galactose 2.898 0.7117 0.4109
Lactose 0.8148 0.2501 0.1444
Maltose 1.8032 0.3828 0.221
Mannitol 1.1004 0.0883 0.051
Rhamnose 1.3448 0.4854 0.2802
Sorbitol 2.3002 1.2697 0.733
Trehalose 2.2149 0.506 0.2921
Glycerol 1.3355 0.1646 0.095
Glucuronic acid 3.5072 1.0136 0.5852
Arabinan 1.7335 1.3609 0.7857
Galactan 1.342 0.7151 0.4128
Galactomannan 1.4855 0.3299 0.1905
Glucan 1.3192 0.2326 0.1343
Xylan 2.6748 0.9474 0.547
Xyloglucan 1.9167 0.4531 0.2616
Arabinogalactan 2.0698 0.8257 0.4767
Pectin 0.9862 0.397 0.2292
Rhamnogalacturonan 1.592 1.1543 0.6664
Polygalacturonic acid 1.7544 0.8578 0.4953
Mannan 2.8841 0.6969 0.4023
Amylopectin 1.099 0.4317 0.2492
Inulin 1.2686 0.3536 0.2042
BSA 0.919 0.2527 0.1459
Starvation induced by water agar transfer Expression profiling on starvation induced by transfer to water agar Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Control 0.6593 0.0624 0.036
2h WAT 0.6041 0.5326 0.3075
4h WAT 0.7219 0.2972 0.1716
8h WAT 1.7717 0.8067 0.4657
16h WAT 1.3706 1.1008 0.6355
24h WAT 0.6687 0.4968 0.2868
WAT hyphal knot -30h 0.4591 0.404 0.2333
WAT hyphal knot -22h 0.2682 0.1146 0.0661
WAT hyphal knot -15h 0.6984 0.6065 0.3502
WAT hyphal knot -7.5h 1.4703 1.0578 0.6107
WAT hyphal knot 0.4323 0.4279 0.247
WAT hyphal knot +7.5h 0.4473 0.241 0.1391
Straw time series Time series expression profiling on straw as a carbon source Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 1.0531 0.6447 0.3722
Straw 3h 0.8536 0.0434 0.0251
Straw 6h 0.6835 0.6604 0.3813
Straw 12h 0.9236 0.2324 0.1342
Straw 24h 0.7154 0.1561 0.0901
Stress conditions 1 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 0.4311 0.3768 0.2175
Frost (-20C, 30min) 0.6347 0.3239 0.187
Heat shock (47C, 2h) 0 0 0
High CO2 0.7323 0.5773 0.3333
Drought (4% agar, 12h) 0.4496 0.2551 0.1473
Oxidative (1mM H2O2, 3h) 0.1078 0.1867 0.1078
Acidic (pH4, 3h) 0.5225 0.3424 0.1977
Alkaline (pH9, 3h) 0.2214 0.2951 0.1704
Osmotic (sorbitol 2h) 0.5053 0.4857 0.2804
CongoRed (3h) 0.1495 0.0473 0.0273
Cobalt chloride control 0.4031 0.2208 0.1275
Cobalt chloride 2mM 0.198 0.0869 0.0502
Stress conditions 2 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 0.2512 0.214 0.1236
Cold stimulation 0.7445 0.0657 0.0379
Scratched surface 0.5787 0.1442 0.0832
Ca2+, 200mM, 24h 0.2529 0.2387 0.1378
Cu2+, 2mM, 6h 0.3525 0.2252 0.13
Voriconazole 0 0 0
Trichoderma interaction, early 1.007 0.4387 0.2533
Trichoderma interaction 60h 0.5891 1.0203 0.5891
Cobalt chloride 2mM repeat 0.2811 0.3761 0.2172
Hypoxia 0.4268 0.3848 0.2222
Hypoxia control 0.9143 0.2392 0.1381
Protoplastation control 0.5366 0.0095 0.0067
Protoplastation 3.5h 0 0 0
Protoplastation 1.5h 2.8174 1.6828 1.1899

General data

Systematic name -
Protein id CopciAB_547154.T0
Description other AgaK1 protein kinase

Annotation summary

Conserved domains

Analysis Signature accession Signature description InterPro Accession Start End
No records

SignalP

Prediction Start End Score
No records

Transmembrane domains

Domain n Start End Length
No records

InterPro

Accession Description
IPR011009 Protein kinase-like domain superfamily

GO

Go id Term Ontology
No records

KEGG

KEGG Orthology
No records

EggNOG

COG category Description
G other AgaK1 protein kinase

CAZy

Class Family Subfamily
No records

Transcription factor

Group
No records

Conservation of CopciAB_547154 across fungi.

Arrow shows the origin of gene family containing CopciAB_547154.

Protein

Sequence id CopciAB_547154.T0
Sequence >CopciAB_547154.T0
MQYPRTDLQSWTTKFNGDIKVLQREVPIIHNQWNSLAPFFESHGYYLYESLDKALKFSLAARPRQSFECQEYINE
PEYPYARRVIAREEVVPFHDIQSFRVWPAQDKFGREVMIKMIHTSDMPDANELEVHRRLNTPEARADPRNHTLPT
LGYIEHEAVVFAVMPRWGPSFVGLRFCTVGQLFHLADVLFEGLVFLHENRIAHRDIACQNTVMNVLYQEFRYHGP
DAHLLRNPPEVRYAYIDFGASLIFPMDTDIDTVILERESCMGFDYLGIAGGRANPFKDDVLVLAHTLQNWVRVIE
DVVPEIGPYFDNILSDFNDPPSAAVCLERLRELKKRVSDDVLKSAPQAMLWKAGRGMGLQKYTPGQHY
Length 368

Coding

Sequence id CopciAB_547154.T0
Sequence >CopciAB_547154.T0
ATGCAATACCCTCGGACAGACTTACAGTCTTGGACAACGAAATTCAACGGCGACATCAAAGTTCTTCAACGAGAG
GTACCCATAATTCATAATCAGTGGAACTCCCTCGCGCCTTTCTTTGAAAGCCACGGGTACTATCTTTATGAGAGC
CTCGACAAGGCCCTCAAGTTCAGCCTGGCTGCTAGGCCTCGACAATCATTCGAGTGTCAAGAGTACATCAACGAG
CCAGAATACCCTTACGCACGCCGTGTAATTGCCAGGGAAGAAGTTGTGCCTTTCCATGACATTCAGAGTTTTCGT
GTCTGGCCAGCTCAAGATAAGTTCGGCCGGGAGGTGATGATAAAGATGATTCATACCTCTGACATGCCCGACGCG
AACGAGCTTGAGGTACATAGGCGCTTGAACACTCCGGAAGCTCGGGCAGATCCCAGAAATCATACTTTACCCACC
CTCGGGTATATTGAACATGAAGCGGTTGTTTTCGCAGTTATGCCACGATGGGGACCATCATTTGTTGGACTTAGG
TTCTGCACTGTCGGGCAGTTGTTCCACCTTGCAGATGTGTTGTTCGAGGGACTCGTCTTTCTCCACGAGAATAGA
ATTGCACACCGAGACATTGCATGTCAGAATACGGTCATGAACGTGCTCTACCAAGAGTTTAGATACCATGGCCCT
GACGCACACCTCCTCCGCAACCCGCCTGAGGTTAGATATGCTTATATCGACTTCGGTGCATCGTTGATCTTCCCC
ATGGACACCGACATCGATACTGTAATCCTCGAGAGGGAAAGTTGCATGGGGTTCGATTATCTCGGCATCGCAGGG
GGTCGGGCGAATCCCTTCAAAGACGATGTTCTCGTCTTAGCGCACACTCTGCAGAACTGGGTTCGAGTGATTGAA
GATGTGGTCCCCGAAATTGGCCCATACTTTGACAACATCCTATCTGACTTCAACGACCCACCTTCGGCCGCTGTT
TGTCTGGAGAGGCTACGAGAGCTCAAGAAGCGCGTCTCCGACGACGTTCTGAAGTCCGCCCCTCAGGCCATGCTT
TGGAAAGCTGGACGAGGAATGGGTCTTCAGAAGTATACTCCAGGGCAGCATTACTAA
Length 1107

Transcript

Sequence id CopciAB_547154.T0
Sequence >CopciAB_547154.T0
GTCCGAGTTTCCTTTGTCCATCAAGGAATCGCTAGGGGCCGTGTGCAGACCACATGTGGTGTCCCCGGGGGTAGT
TCCCATTTCGTCTCACAATGGCGAATATCCCATTCTGGACCAACAAAGGTGAGGTCAAGATCTACTTAAAAGAGG
ACACACCCAGCTGGCAACCACTCCATCAGATTTTGCTTCATATTTGAGAAACCTTGCAAGGCCCCGCCGCAGCTT
GCCTCCCAACCATCGATATCGACTGACCACGCCACCCACGACGCTCCGCCATGCAATACCCTCGGACAGACTTAC
AGTCTTGGACAACGAAATTCAACGGCGACATCAAAGTTCTTCAACGAGAGGTACCCATAATTCATAATCAGTGGA
ACTCCCTCGCGCCTTTCTTTGAAAGCCACGGGTACTATCTTTATGAGAGCCTCGACAAGGCCCTCAAGTTCAGCC
TGGCTGCTAGGCCTCGACAATCATTCGAGTGTCAAGAGTACATCAACGAGCCAGAATACCCTTACGCACGCCGTG
TAATTGCCAGGGAAGAAGTTGTGCCTTTCCATGACATTCAGAGTTTTCGTGTCTGGCCAGCTCAAGATAAGTTCG
GCCGGGAGGTGATGATAAAGATGATTCATACCTCTGACATGCCCGACGCGAACGAGCTTGAGGTACATAGGCGCT
TGAACACTCCGGAAGCTCGGGCAGATCCCAGAAATCATACTTTACCCACCCTCGGGTATATTGAACATGAAGCGG
TTGTTTTCGCAGTTATGCCACGATGGGGACCATCATTTGTTGGACTTAGGTTCTGCACTGTCGGGCAGTTGTTCC
ACCTTGCAGATGTGTTGTTCGAGGGACTCGTCTTTCTCCACGAGAATAGAATTGCACACCGAGACATTGCATGTC
AGAATACGGTCATGAACGTGCTCTACCAAGAGTTTAGATACCATGGCCCTGACGCACACCTCCTCCGCAACCCGC
CTGAGGTTAGATATGCTTATATCGACTTCGGTGCATCGTTGATCTTCCCCATGGACACCGACATCGATACTGTAA
TCCTCGAGAGGGAAAGTTGCATGGGGTTCGATTATCTCGGCATCGCAGGGGGTCGGGCGAATCCCTTCAAAGACG
ATGTTCTCGTCTTAGCGCACACTCTGCAGAACTGGGTTCGAGTGATTGAAGATGTGGTCCCCGAAATTGGCCCAT
ACTTTGACAACATCCTATCTGACTTCAACGACCCACCTTCGGCCGCTGTTTGTCTGGAGAGGCTACGAGAGCTCA
AGAAGCGCGTCTCCGACGACGTTCTGAAGTCCGCCCCTCAGGCCATGCTTTGGAAAGCTGGACGAGGAATGGGTC
TTCAGAAGTATACTCCAGGGCAGCATTACTAACAGTAAGAAGACTCCAATTATTCCTTTGTGCAAAGAATGAGGT
ACAAGTATATGTAGAGAATACACAGTGGTGTTGCAAAGA
Length 1464

Gene

Sequence id CopciAB_547154.T0
Sequence >CopciAB_547154.T0
GTCCGAGTTTCCTTTGTCCATCAAGGAATCGCTAGGGGCCGTGTGCAGACCACATGTGGTGTCCCCGGGGGTAGT
TCCCATTTCGTCTCACAATGGCGAATATCCCATTCTGGACCAACAAAGGTGAGGTCAAGATCTACTTAAAAGAGG
ACACACCCAGCTGGCAACCACTCCATCAGATTTTGCTTCATATTTGAGAAACCTTGCAAGGCCCCGCCGCAGCTT
GCCTCCCAACCATCGATATCGACTGACCACGCCACCCACGACGCTCCGCCATGCAATACCCTCGGACAGACTTAC
AGTCTTGGACAACGAAATTCAACGGCGACATCAAAGTTCTTCAACGAGAGGTACCCATAATTCATAATCAGTGGA
ACTCCCTCGCGCCTTTCTTTGAAAGCCACGGGTACTATCTTTATGAGAGCCTCGACAAGGCCCTCAAGTTCAGCC
TGGCTGCTAGGCCTCGACAATCATTCGAGTGTCAAGAGTACATCAACGAGCCAGAATACCCTTACGCACGCCGTG
TAATTGCCAGGGAAGAAGTTGTGCCTTTCCATGACATTCAGGTAGATCCAATCACGCCTGACCGCATACAACATC
AGTGAATCCAAAGATTTTTAGAGTTTTCGTGTCTGGCCAGCTCAAGATAAGTTCGGCCGGGAGGTGATGATAAAG
TAAGTTCCGCTCTCGAAGTTTTAACTGGAAAGTTGTAACTCGTGTTTACTTAGGATGATTCATACCTCTGACATG
CCCGACGCGAACGAGCTTGAGGTACATAGGCGCTTGAACACTCCGGAAGCTCGGGCAGATCCCAGAAATCATACT
TTACCCACCCTCGGGTATATTGAACATGAAGCGGTTGTTTTCGCAGTTATGCCACGGTGAGTGTATAGAAGACTC
TTTTCATTGGCTCGGGAGATGGTGTGCTAACCACTCACTCGTAGATGGGGACCATCATTTGTTGGACTTAGGTTC
TGCACTGTCGGGCAGTTGTTCCACCTTGCAGATGTGTTGTTCGAGGTAAGTGGCCAGAGGCCTATCTGGCAATGC
TCTCCTAATTCAGTTCAAATTCTGTAGGGACTCGTCTTTCTCCACGAGAATAGAATTGCACACCGAGACATTGCA
TGTCAGAATACGGTCATGAACGTGCTCTACCAAGAGTTTAGATACCATGGCCCTGACGCACACCTCCTCCGCAAC
CCGCCTGAGGTTAGATATGCTTATATCGACTTCGGTGCATCGTTGATCTTCCCCATGGACACCGACATCGATACT
GTAATCCTCGAGAGGGAAAGTTGCATGGGGTTCGATTATCTCGGCATCGCAGGGGGTCGGGCGAATCCCTTCAAA
GACGATGTTCTCGTCTTAGCGCACACTCTGCAGAACTGGGTTCGAGTAAGCTCCTTTTTCTGTCCTCTGGCGGAG
TCATGAAATGTTGACACATACCTCAGGTGATTGAAGATGTGGTCCCCGAAATTGGCCCATACTTTGACAACATCC
TATCTGACTTCAACGACCCACCTTCGGCCGCTGTTTGTCTGGAGAGGCTACGAGAGCTCAAGAAGCGCGTCTCCG
ACGACGTTCTGAAGTCCGCCCCTCAGGCCATGCTTTGGAAAGCTGGACGAGGTATGTCCGACCGTTCCGGAATGT
TGCGTCACCCGGTCTAATCTTCCAATCACTTCAGGAATGGGTCTTCAGAAGTATACTCCAGGGCAGCATTACTAA
CAGTAAGAAGACTCCAATTATTCCTTTGTGCAAAGAATGAGGTACAAGTATATGTAGAGAATACACAGTGGTGTT
GCAAAGA
Length 1807