CopciAB_547234
Coprinopsis cinerea A43mutB43mut pab1-1 #326

General data

Systematic name CopciAB_547234 Strain Coprinopsis cinerea Okayama 7
Standard name - Synonyms 547234
Uniprot id Functional description Protein kinase subdomain-containing protein PKL ccin3
Location scaffold_8:152252..153695 Strand -
Gene length (nt) 1444 Transcript length (nt) 1313
CDS length (nt) 993 Protein length (aa) 330

Reciprocal best hits in model fungi

Strain name Gene / Protein name

Orthologs in mushroom models

Strain name Gene / Protein name Pident E-value Bits
0

Expression

Name Summary Attribution Assay type
Carbon metabolism Transcriptional changes along alternative morphogenetic paths of C. cinerea Xie et al. 2020 RNA-Seq
Sample Mean cpm SD cpm Se of mean
sclerotia 0.9863 0.6441 0.3718
oidia 1.9808 0.5878 0.3394
vegetative_mycelium 3.4772 0.2232 0.1289
primordia 0.3085 0.2242 0.1294
hyphal_knot 1.2178 0.2931 0.1692
young_fruiting_body 0 0 0
Complex carbon sources 1 (long incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control - glucose 0.5889 0.2013 0.1162
Wheat bran 2.7399 0.1579 0.0912
Horse manure 1.5085 0.6718 0.3878
Oak leaves 1.6638 0.8603 0.4967
Hay 2.0133 0.3887 0.2244
Corn stalk 1.8622 0.0645 0.0372
Pectine 1.9728 0.389 0.2246
Microcrystalline cellulose 0.4149 0.1863 0.1075
Xylose 1.8438 1.1763 0.6791
Cellobiose 0.9763 0.2906 0.1678
Lignin 0.1401 0.1252 0.0723
Apple peels 2.1496 0.3009 0.1738
Coprinopsis challenged with bacteria Transcriptional response to Bacillus subtilis and Escherichia coli. Kombrink et al. 2018 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control 2.787 0.6782 0.3916
Bsubtilis 2.1079 0.1427 0.0824
Ecoli 3.0187 0.2273 0.1312
Early development 1 Time series expression profiling of basidiospore and oidium germination Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
BS 0h 0.1805 0.1085 0.0626
BS 4h 0.0751 0.0107 0.0062
BS 8h 0.2174 0.1709 0.0987
BS 12h 0.1796 0.1583 0.0914
Oidia 0 h 0.041 0.0711 0.041
Oidia 18 h 0.0278 0.0482 0.0278
Sclerotia 0.8335 0.2999 0.1732
Early development 2 Time series expression profiling of mycelial growth, light induction and fruiting body initiation. Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
DM 12h 2.0756 0.707 0.4082
DM 36h 1.8642 0.6039 0.3487
DM 60h 0.7154 0.1262 0.0728
DM 84h 1.6932 0.4003 0.2311
DM 108h 1.4368 0.3039 0.1755
DM 132h 1.751 0.8274 0.4777
DM 156hAE 2.4205 1.159 0.6691
ELI1hAE 4.8372 1.4975 0.8646
ELI2hAE 3.097 1.4513 0.8379
LI2hAE 3.8827 0.5687 0.3283
LI6hAE 5.969 0.9334 0.5389
LI12hAE 4.9331 1.7075 0.9858
LI18hAE 2.0019 0.7544 0.4356
LI 24hAE 2.3945 0.8144 0.4702
DM 156hAM 1.1425 0.0647 0.0373
ELI1hAM 1.7996 0.6739 0.3891
ELI2hAM 2.106 0.2435 0.1406
LI2hAM 2.8301 0.5376 0.3104
LI6hAM 2.7182 0.7601 0.4389
LI12hAM 1.1991 1.3124 0.7577
LI18hAM 2.0006 0.6454 0.3726
LI 24hAM 0.3214 0.5567 0.3214
LI 24hHK 0.8938 0.4136 0.2388
L/D 6h 0.8046 0.4229 0.2441
L/D 12h 0.7817 0.667 0.3851
L/D 18h 0.4624 0.2774 0.1602
L/D 24h 0.2977 0.2779 0.1605
Fruiting body development RNA-Seq analysis of fruiting body development Krizsan et al. 2019 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Vegetative mycelium 0.3192 0.0516 0.0298
Hyphal knots 0.2378 0.1118 0.0645
Primordium 1 0.4246 0.2374 0.1371
Primordium 2 0.3177 0.0618 0.0357
Young Fruiting body cap 0.3462 0.2746 0.1585
Younf fruiting body gill 0.1433 0.1551 0.0896
Young fruiting body stipe 0.3712 0.0427 0.0247
Mature fruiting body cap_gill 0.3685 0.0843 0.0487
Mature fruiting body stipe 0.9594 0.4238 0.2447
Nitrogen sources (12h incubation) Expression profiling on diverse nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Complete medium - control 4.6777 1.2791 0.7385
NH4NO3 1.4958 0.5735 0.3311
Proline 2.1966 0.0245 0.0141
Tryptophan 1.5223 0.3126 0.1805
Isoleucin 2.1971 0.7762 0.4481
Arginine 1.2703 0.1074 0.062
Metionine 2.1631 0.1803 0.1041
NaNO3 2.0893 0.2095 0.121
Plant biomass (12h incubation) Expression profiling on diverse plant biomasses as carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 4.6777 1.2791 0.7385
Citrus peel 3.2583 1.0672 0.6161
Poplar leaves 3.1609 0.7406 0.4276
Typha leaves 4.224 0.6917 0.3993
Overwintered Salix leaves 3.7474 0.6637 0.3832
Reed flowering 3.0946 1.6137 0.9317
Tigernut 3.354 0.5621 0.3245
Energy cane 3.5057 0.1198 0.0692
Guar gum 3.5084 1.6466 0.9506
Apple peels 4.2519 0.4726 0.2728
Cellobiose 4.5918 0.3489 0.2015
Corn stalk 3.7495 1.0147 0.5858
Horse manure 4.342 0.9755 0.5632
Lignin 4.6514 1.1552 0.6669
Microcrystalline cellulose 5.0001 2.2976 1.3265
Oak leaves 2.8574 0.572 0.3303
Pectin esterified 2.9279 0.8305 0.4795
Poplar sawdust 3.1436 0.8737 0.5044
Wheat bran 3.2209 1.5838 0.9144
Chlamydomonas reinhardtii 4.2544 0.9704 0.5603
Vertatryl alcohol 1.5847 0.6637 0.3832
Furfural 1.3339 1.2409 0.7164
Autoclaved mycelium 2.9759 0.8789 0.5074
Simple and complex carbon and nitrogen sources Expression profiling on diverse complex carbon and nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 2.5129 0.7069 0.4082
Ribose 5.5678 0.3575 0.2064
Mannose 3.8641 1.226 0.8669
Fructose 4.0766 0.5884 0.3397
Arabinose 3.9337 1.1808 0.6817
Xylose 4.5941 0.6384 0.3686
Galacturonic acid 3.5009 2.051 1.1841
Rhamnogalacturonan 3.8115 0.213 0.123
Pectin esterified 3.97 1.3344 0.7704
Polygalacturonic acid 5.0292 0.5592 0.3228
Sodium acetate 5.3231 0.4295 0.248
No nitrogen 3.7622 0.311 0.1796
BSA 5.2639 0.6938 0.4006
Glutamine 4.5301 1.039 0.5999
No phosphate 3.1985 1.1657 0.673
No carbon 3.8965 0.2561 0.1811
No sulphur 2.6739 0.3109 0.1795
Simple and complex carbon sources (12h incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 4.6777 1.2791 0.7385
Amylose 3.8857 0.3187 0.184
Fucose 3.7907 0.9552 0.5515
Galactose 2.8218 0.6204 0.3582
Lactose 1.9988 0.1561 0.0902
Maltose 2.2073 0.4814 0.278
Mannitol 2.2335 0.3488 0.2014
Rhamnose 2.7859 0.2795 0.1614
Sorbitol 3.437 0.1484 0.0857
Trehalose 2.9888 1.1213 0.6474
Glycerol 3.3186 0.2935 0.1694
Glucuronic acid 3.8013 1.1297 0.6522
Arabinan 5.4586 0.6143 0.3546
Galactan 3.8792 0.6068 0.3504
Galactomannan 3.6484 0.515 0.2974
Glucan 4.1767 0.8366 0.483
Xylan 4.5249 0.5967 0.3445
Xyloglucan 3.3151 0.4427 0.2556
Arabinogalactan 3.6488 0.1409 0.0814
Pectin 1.4409 0.7515 0.4339
Rhamnogalacturonan 1.0288 0.2586 0.1493
Polygalacturonic acid 3.9272 0.0925 0.0534
Mannan 3.4294 0.8432 0.4868
Amylopectin 3.2886 1.7295 0.9985
Inulin 3.2085 1.2356 0.7134
BSA 3.8435 1.101 0.6357
Starvation induced by water agar transfer Expression profiling on starvation induced by transfer to water agar Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Control 0.7154 0.1262 0.0728
2h WAT 1.7133 0.0989 0.0571
4h WAT 1.814 0.2943 0.1699
8h WAT 1.1347 0.6855 0.3958
16h WAT 1.6326 0.8671 0.5006
24h WAT 1.5022 0.2777 0.1603
WAT hyphal knot -30h 4.7255 2.9889 1.7256
WAT hyphal knot -22h 3.5885 0.4655 0.2688
WAT hyphal knot -15h 5.086 0.6826 0.3941
WAT hyphal knot -7.5h 3.9363 1.2263 0.708
WAT hyphal knot 3.0116 1.6733 0.9661
WAT hyphal knot +7.5h 2.2906 1.0759 0.6212
Straw time series Time series expression profiling on straw as a carbon source Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 3.8178 0.8611 0.4972
Straw 3h 3.1122 1.2585 0.7266
Straw 6h 3.6155 1.9648 1.1344
Straw 12h 3.1559 0.5749 0.3319
Straw 24h 3.6218 1.9484 1.1249
Stress conditions 1 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 2.4809 1.9487 1.1251
Frost (-20C, 30min) 1.2355 0.1827 0.1055
Heat shock (47C, 2h) 1.1289 0.5167 0.2983
High CO2 1.256 0.3886 0.2244
Drought (4% agar, 12h) 0.8857 0.3432 0.1981
Oxidative (1mM H2O2, 3h) 1.3286 0.3134 0.1809
Acidic (pH4, 3h) 1.2339 1.0847 0.6263
Alkaline (pH9, 3h) 2.2061 0.6557 0.3786
Osmotic (sorbitol 2h) 0.4586 0.4863 0.2808
CongoRed (3h) 1.0387 0.2198 0.1269
Cobalt chloride control 1.8023 0.41 0.2367
Cobalt chloride 2mM 0.7545 0.1814 0.1048
Stress conditions 2 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 0.3351 0.2463 0.1422
Cold stimulation 2.3165 0.9882 0.5705
Scratched surface 2.4921 0.9251 0.5341
Ca2+, 200mM, 24h 1.032 0.7072 0.4083
Cu2+, 2mM, 6h 1.0523 1.0663 0.6156
Voriconazole 1.9072 0.9593 0.5539
Trichoderma interaction, early 2.0824 0.8917 0.5148
Trichoderma interaction 60h 2.557 4.211 2.4312
Cobalt chloride 2mM repeat 3.6352 1.9685 1.1365
Hypoxia 1.5063 0.336 0.194
Hypoxia control 1.3974 0.8455 0.4882
Protoplastation control 1.0189 0.0578 0.0409
Protoplastation 3.5h 1.6478 2.3304 1.6478
Protoplastation 1.5h 4.898 0.4405 0.3115

General data

Systematic name -
Protein id CopciAB_547234.T0
Description Protein kinase subdomain-containing protein PKL ccin3

Annotation summary

Conserved domains

Analysis Signature accession Signature description InterPro Accession Start End
No records

SignalP

Prediction Start End Score
No records

Transmembrane domains

Domain n Start End Length
No records

InterPro

Accession Description
No records

GO

Go id Term Ontology
No records

KEGG

KEGG Orthology
No records

EggNOG

COG category Description
G Protein kinase subdomain-containing protein PKL ccin3

CAZy

Class Family Subfamily
No records

Transcription factor

Group
No records

Conservation of CopciAB_547234 across fungi.

Arrow shows the origin of gene family containing CopciAB_547234.

Protein

Sequence id CopciAB_547234.T0
Sequence >CopciAB_547234.T0
MFSTILIHNCGSIDDESITVSLKASPSFPGAVWFQEDWEQPVPATWAAKDISGFDGTLEIRLVERISEGRIGVTY
VAQVISATQGGSDIRSTLPSTLCLKFAKPEFSRSLAREAWFYEQLESLQGISVPLSFGFFASTASEQPKFPGVDF
EFEPWTDRQVLFEDTDSTPDNIDEYPSPDWLTDDVPEYYVERTFEHTHHELDSPWYRWSRNLDDNPTISVLVLEL
LGEPCTGWKTAADKQAIHEVMDDLAALGVVQGNLTPWNTLAFKPSPHSEPRLCLRHGVVHPWRIIDFDRSKMADP
KNLSQYGSYHVLDTESMLDVATEFDFWAWE
Length 330

Coding

Sequence id CopciAB_547234.T0
Sequence >CopciAB_547234.T0
ATGTTCTCGACAATCCTGATTCACAACTGCGGCTCCATCGACGACGAATCAATAACGGTCTCTCTGAAAGCCTCA
CCGTCGTTCCCCGGCGCCGTCTGGTTTCAGGAAGACTGGGAACAACCCGTCCCAGCCACATGGGCGGCCAAGGAT
ATCTCTGGCTTTGACGGGACGCTCGAAATCAGACTTGTAGAGCGCATCTCAGAGGGGCGAATTGGCGTAACCTAC
GTGGCACAAGTCATTTCCGCAACACAAGGGGGCAGTGACATCCGTTCAACCCTGCCTTCCACCTTGTGCCTCAAA
TTCGCGAAGCCAGAGTTCAGCCGTAGCCTAGCTAGAGAAGCTTGGTTCTACGAACAACTCGAGTCGTTGCAGGGC
ATCTCCGTACCCCTTTCATTCGGATTCTTCGCGTCCACCGCCTCGGAACAACCCAAATTCCCCGGTGTCGATTTC
GAGTTTGAGCCCTGGACTGACCGACAGGTATTATTCGAAGATACGGACTCGACCCCGGACAACATCGACGAGTAT
CCTTCGCCAGACTGGCTCACCGACGACGTGCCCGAATATTACGTTGAACGGACCTTTGAGCACACGCACCACGAA
CTGGATTCGCCCTGGTACAGATGGAGTCGGAACCTCGACGACAATCCTACCATCTCCGTTCTCGTCCTCGAGCTC
CTTGGCGAACCATGTACTGGGTGGAAAACTGCTGCAGACAAGCAGGCAATCCATGAAGTAATGGACGACTTGGCT
GCACTCGGCGTGGTGCAGGGTAACCTAACACCTTGGAACACACTCGCATTCAAGCCATCCCCGCACAGTGAGCCA
CGGCTATGCCTTCGACACGGAGTTGTCCATCCCTGGCGGATCATCGACTTCGACCGATCCAAGATGGCAGATCCC
AAAAACCTGAGCCAATATGGCAGCTATCACGTTTTGGATACAGAGTCTATGTTGGATGTTGCGACTGAGTTCGAC
TTTTGGGCATGGGAATAG
Length 993

Transcript

Sequence id CopciAB_547234.T0
Sequence >CopciAB_547234.T0
TGGTCAAGTCGTGGTAACCTCCATGTCCCAGGGATTTCGCGGAGCGTCAAACTATCGATAGTCTAGTTTCCATGA
GCACAGCGCAAGGTGGACGAAATTTCCACGTGTGCACAGGATGTTCTCGACAATCCTGATTCACAACTGCGGCTC
CATCGACGACGAATCAATAACGGTCTCTCTGAAAGCCTCACCGTCGTTCCCCGGCGCCGTCTGGTTTCAGGAAGA
CTGGGAACAACCCGTCCCAGCCACATGGGCGGCCAAGGATATCTCTGGCTTTGACGGGACGCTCGAAATCAGACT
TGTAGAGCGCATCTCAGAGGGGCGAATTGGCGTAACCTACGTGGCACAAGTCATTTCCGCAACACAAGGGGGCAG
TGACATCCGTTCAACCCTGCCTTCCACCTTGTGCCTCAAATTCGCGAAGCCAGAGTTCAGCCGTAGCCTAGCTAG
AGAAGCTTGGTTCTACGAACAACTCGAGTCGTTGCAGGGCATCTCCGTACCCCTTTCATTCGGATTCTTCGCGTC
CACCGCCTCGGAACAACCCAAATTCCCCGGTGTCGATTTCGAGTTTGAGCCCTGGACTGACCGACAGGTATTATT
CGAAGATACGGACTCGACCCCGGACAACATCGACGAGTATCCTTCGCCAGACTGGCTCACCGACGACGTGCCCGA
ATATTACGTTGAACGGACCTTTGAGCACACGCACCACGAACTGGATTCGCCCTGGTACAGATGGAGTCGGAACCT
CGACGACAATCCTACCATCTCCGTTCTCGTCCTCGAGCTCCTTGGCGAACCATGTACTGGGTGGAAAACTGCTGC
AGACAAGCAGGCAATCCATGAAGTAATGGACGACTTGGCTGCACTCGGCGTGGTGCAGGGTAACCTAACACCTTG
GAACACACTCGCATTCAAGCCATCCCCGCACAGTGAGCCACGGCTATGCCTTCGACACGGAGTTGTCCATCCCTG
GCGGATCATCGACTTCGACCGATCCAAGATGGCAGATCCCAAAAACCTGAGCCAATATGGCAGCTATCACGTTTT
GGATACAGAGTCTATGTTGGATGTTGCGACTGAGTTCGACTTTTGGGCATGGGAATAGGCAGCGTGCTGTAGGCG
GATATGACTCGATCAAGTTCCTGTAGCCGCCCCTCCCATGCACCTTATCGTTTGCCACCCTTCTACTTCTCCTTG
CCGTAGATCAAGGGACAGTGGAGGGAATGGAGACTACTGTCTATCACCTTTGTATGTAAAGATTTACATTCTCTA
TTCAGATACCCTTACTTGACGAGAGACATTCCAATTTC
Length 1313

Gene

Sequence id CopciAB_547234.T0
Sequence >CopciAB_547234.T0
TGGTCAAGTCGTGGTAACCTCCATGTCCCAGGGATTTCGCGGAGCGTCAAACTATCGATAGTCTAGTTTCCATGA
GCACAGCGCAAGGTGGACGAAATTTCCACGTGGTATGACAATCCCCATGTCGCGTGTTGCGTGTTGACTCCCCCC
TCCATCCTGCCTTCCCGTCAAGTGCACAGGATGTTCTCGACAATCCTGATTCACAACTGCGGCTCCATCGACGAC
GAATCAATAACGGTCTCTCTGAAAGCCTCACCGTCGTTCCCCGGCGCCGTCTGGTTTCAGGAAGACTGGGAACAA
CCCGTCCCAGCCACATGGGCGGCCAAGGATATCTCTGGCTTTGACGGGACGCTCGAAATCAGACTTGTAGAGCGC
ATCTCAGAGGGGCGAATTGGCGTAACCTACGTGGCACAAGTCATTTCCGCAACACAAGGGGGCAGTGACATCCGT
TCAACCCTGCCTTCCACCTTGTGCCTCAAATTCGCGAAGCCAGAGTTCAGCCGTAGCCTAGCTAGAGAAGCTTGG
TTCTACGAACAACTCGAGTCGTTGCAGGGCATCTCCGTACCCCTTTCATTCGGATTCTTCGCGTCCACCGCCTCG
GAACAACCCAAATTCCCCGGTGTCGATTTCGAGTTTGAGCCCTGGACTGACCGACAGGTATTATTCGAAGATACG
GACTCGACCCCGGACAACATCGACGAGTATCCTTCGCCAGACTGGCTCACCGACGACGTGCCCGAATATTACGTT
GAACGGACCTTTGAGCACACGCACCACGAACTGGATTCGCCCTGGTACAGATGGAGTCGGAACCTCGACGACAAT
CCTACCATCTCCGTTCTCGTCCTCGAGCTCCTTGGCGAACCATGTACTGGGTGGAAAACTGCTGCAGACAAGTGT
GTTCTTCGTTCACATATAATCCCGGTGATTCTTTTTGGCTAACATCAAAACTTGGACTCCAGGCAGGCAATCCAT
GAAGTAATGGACGACTTGGCTGCACTCGGCGTGGTGCAGGGTAACCTAACACCTTGGAACACACTCGCATTCAAG
CCATCCCCGCACAGTGAGCCACGGCTATGCCTTCGACACGGAGTTGTCCATCCCTGGCGGATCATCGACTTCGAC
CGATCCAAGATGGCAGATCCCAAAAACCTGAGCCAATATGGCAGCTATCACGTTTTGGATACAGAGTCTATGTTG
GATGTTGCGACTGAGTTCGACTTTTGGGCATGGGAATAGGCAGCGTGCTGTAGGCGGATATGACTCGATCAAGTT
CCTGTAGCCGCCCCTCCCATGCACCTTATCGTTTGCCACCCTTCTACTTCTCCTTGCCGTAGATCAAGGGACAGT
GGAGGGAATGGAGACTACTGTCTATCACCTTTGTATGTAAAGATTTACATTCTCTATTCAGATACCCTTACTTGA
CGAGAGACATTCCAATTTC
Length 1444