CC1G_01509
Coprinopsis cinerea Okoyama 7

General data

Systematic name CC1G_01509 Strain Coprinopsis cinerea A43mutB43mut pab1-1 #326
Standard name - Synonyms
Uniprot id A8NHU8 Functional description Exo-rhamnogalacturonase B
Location Chr_10:136400..137787 Strand -
Gene length (nt) 1388 Transcript length (nt) 1274
CDS length (nt) 1257 Protein length (aa) 418

Reciprocal best hits in model fungi

Strain name Gene / Protein name
Neurospora crassa gh28-2
Aspergillus nidulans AN10274_rhgB

Orthologs in mushroom models

Strain name Gene / Protein name Pident E-value Bits
Auricularia subglabra Aurde3_1_1309351 32.4 2.214E-66 233
Lentinula edodes W1-26 v1.0 Lentinedodes1_3839 31.9 1.357E-66 233
Lentinula edodes NBRC 111202 Lenedo1_1220072 31.3 1.44E-65 230
Flammulina velutipes Flave_chr03AA00387 31.8 2.913E-65 229
Lentinula edodes B17 Lened_B_1_1_4785 32.4 1.448E-60 215
Ganoderma sp. 10597 SS1 v1.0 Gansp1_122672 33.7 1.831E-58 209
Grifola frondosa Grifr_OBZ69746 31.8 2.35E-51 188

Expression

Name Summary Attribution Assay type
Coprinopsis cinerea mycelia exposed to different biotic and abiotic stress conditions Identification of a Novel Nematotoxic Protein in Coprinopsis cinerea Plaza et al. 2016 RNA-seq
Sample Mean cpm SD cpm Se of mean
O7 + PBS 10.4985 1.6516 0.9536
O7 + A. avenae 11.6675 3.0248 1.7464
O7 + C. elegans 9.3215 0.3035 0.1752
O7 + mechanical damage 10.048 3.0187 1.7429
O7 + E. coli 8.2245 2.0316 1.1729
O7 + B. subtilis 10.8836 3.065 1.7696

General data

Systematic name -
Protein id 1302
Description Exo-rhamnogalacturonase B

Annotation summary

0 100 200 300 400 418

Conserved domains

Analysis Signature accession Signature description InterPro Accession Start End
Pfam PF00295 Glycosyl hydrolases family 28 IPR000743 95 396

SignalP

Prediction Start End Score
SP(Sec/SPI) 1 22 0.9975

Transmembrane domains

Domain n Start End Length
No records

InterPro

Accession Description
IPR012334 Pectin lyase fold
IPR011050 Pectin lyase fold/virulence factor
IPR000743 Glycoside hydrolase, family 28

GO

Go id Term Ontology
GO:0004650 polygalacturonase activity MF
GO:0005975 carbohydrate metabolic process BP

KEGG

KEGG Orthology
No records

EggNOG

COG category Description
G Belongs to the glycosyl hydrolase 28 family

CAZy

Class Family Subfamily
GH GH28

Transcription factor

Group
No records

Conservation of CC1G_01509 across fungi.

Arrow shows the origin of gene family containing CC1G_01509.

Protein

Sequence id 1302
Sequence >1302
MKLAASFFASLCLLAGLHPVLAAVTQIGTACTVTPLSPTPVPPGGRPPDDTPQFRDAYSRCGRNGSITFTEGNFY
IGQVMDVTLQNCEINILGTITWSTDIQYWLRNSIAVTYAQRHTAWRISGTNIAIRGHGKGLLFGNGQTWYDQNRN
QGNQMGRPISLTIWRANNVFIDGLTWRQPQFWNTFVAYSQNVTMTNLDMEAKSNSQWTTVNTDGTNIWNSRDIYI
SNWTVYSGDDCICAKGNTTNMHVKDITCYESGGMVVGSIGSVASQPDFVEHVLFENVRLNHSSNAAWIKTYPGQG
YVNNVTFRNIQFSDVNQPIYITSCIYSGQNCDSSRLNIRNVRWENITGTSRYNVGAGMHCSASSPCQNLTFTGID
IRQFNGGGPVKNFCSNIANQATMGLRCDGPCPGNWPQQLNGNR
Length 418

Coding

Sequence id CC1G_01509T0
Sequence >CC1G_01509T0
ATGAAGCTGGCCGCCTCGTTCTTCGCTAGTCTCTGCCTTTTGGCCGGGCTACACCCCGTCCTCGCTGCTGTTACT
CAAATCGGGACTGCATGTACCGTCACACCCCTCTCCCCAACCCCCGTTCCGCCGGGCGGTCGTCCACCGGACGAC
ACCCCTCAATTCCGCGACGCCTACAGCCGCTGCGGCCGTAACGGCTCCATCACGTTCACCGAAGGCAACTTCTAC
ATCGGCCAAGTCATGGACGTCACCCTCCAAAACTGCGAAATCAACATCCTCGGCACCATCACCTGGAGCACCGAC
ATTCAGTACTGGCTCCGAAACAGCATCGCGGTCACCTACGCCCAGAGGCACACGGCGTGGAGGATCAGTGGTACG
AACATCGCGATTAGGGGCCATGGCAAGGGTTTATTGTTCGGAAATGGCCAGACGTGGTACGACCAGAATCGGAAC
CAGGGTAACCAAATGGGAAGGCCTATTTCGCTCACCATTTGGAGGGCGAACAACGTCTTCATTGATGGGTTGACC
TGGAGGCAGCCACAGTTCTGGAACACATTCGTTGCTTACTCGCAGAATGTGACCATGACCAACCTCGATATGGAG
GCCAAGTCCAACTCTCAGTGGACCACGGTCAATACCGACGGCACCAACATCTGGAACTCTCGCGACATCTACATA
TCTAACTGGACCGTCTACAGTGGCGACGATTGCATCTGCGCCAAAGGCAACACCACCAACATGCACGTCAAGGAC
ATCACCTGTTACGAGTCTGGTGGAATGGTCGTGGGCAGCATCGGTTCCGTCGCCTCCCAACCCGACTTTGTCGAG
CACGTCCTCTTCGAAAACGTGCGCCTCAACCACAGCAGCAATGCCGCCTGGATCAAGACCTACCCCGGCCAAGGC
TACGTCAACAACGTCACCTTCCGCAACATCCAGTTCAGCGACGTGAACCAGCCTATCTACATCACCTCGTGCATC
TACTCCGGCCAGAACTGCGATAGCTCGAGGTTGAATATCAGGAATGTGAGGTGGGAGAACATCACCGGGACGTCG
AGGTATAACGTTGGCGCGGGGATGCATTGTAGTGCTTCGTCTCCGTGCCAGAACTTGACGTTTACGGGCATTGAT
ATTAGGCAGTTCAATGGGGGAGGTCCGGTGAAGAACTTTTGCTCGAATATTGCGAACCAGGCGACGATGGGGCTC
AGGTGCGATGGGCCGTGTCCGGGCAATTGGCCCCAGCAGTTGAACGGAAACAGA
Length 1257

Transcript

Sequence id CC1G_01509T0
Sequence >CC1G_01509T0
CTCGAGGTTACAGAGTAATGAAGCTGGCCGCCTCGTTCTTCGCTAGTCTCTGCCTTTTGGCCGGGCTACACCCCG
TCCTCGCTGCTGTTACTCAAATCGGGACTGCATGTACCGTCACACCCCTCTCCCCAACCCCCGTTCCGCCGGGCG
GTCGTCCACCGGACGACACCCCTCAATTCCGCGACGCCTACAGCCGCTGCGGCCGTAACGGCTCCATCACGTTCA
CCGAAGGCAACTTCTACATCGGCCAAGTCATGGACGTCACCCTCCAAAACTGCGAAATCAACATCCTCGGCACCA
TCACCTGGAGCACCGACATTCAGTACTGGCTCCGAAACAGCATCGCGGTCACCTACGCCCAGAGGCACACGGCGT
GGAGGATCAGTGGTACGAACATCGCGATTAGGGGCCATGGCAAGGGTTTATTGTTCGGAAATGGCCAGACGTGGT
ACGACCAGAATCGGAACCAGGGTAACCAAATGGGAAGGCCTATTTCGCTCACCATTTGGAGGGCGAACAACGTCT
TCATTGATGGGTTGACCTGGAGGCAGCCACAGTTCTGGAACACATTCGTTGCTTACTCGCAGAATGTGACCATGA
CCAACCTCGATATGGAGGCCAAGTCCAACTCTCAGTGGACCACGGTCAATACCGACGGCACCAACATCTGGAACT
CTCGCGACATCTACATATCTAACTGGACCGTCTACAGTGGCGACGATTGCATCTGCGCCAAAGGCAACACCACCA
ACATGCACGTCAAGGACATCACCTGTTACGAGTCTGGTGGAATGGTCGTGGGCAGCATCGGTTCCGTCGCCTCCC
AACCCGACTTTGTCGAGCACGTCCTCTTCGAAAACGTGCGCCTCAACCACAGCAGCAATGCCGCCTGGATCAAGA
CCTACCCCGGCCAAGGCTACGTCAACAACGTCACCTTCCGCAACATCCAGTTCAGCGACGTGAACCAGCCTATCT
ACATCACCTCGTGCATCTACTCCGGCCAGAACTGCGATAGCTCGAGGTTGAATATCAGGAATGTGAGGTGGGAGA
ACATCACCGGGACGTCGAGGTATAACGTTGGCGCGGGGATGCATTGTAGTGCTTCGTCTCCGTGCCAGAACTTGA
CGTTTACGGGCATTGATATTAGGCAGTTCAATGGGGGAGGTCCGGTGAAGAACTTTTGCTCGAATATTGCGAACC
AGGCGACGATGGGGCTCAGGTGCGATGGGCCGTGTCCGGGCAATTGGCCCCAGCAGTTGAACGGAAACAGATAG
Length 1274

Gene

Sequence id CC1G_01509T0
Sequence >CC1G_01509T0
CTCGAGGTTACAGAGTAATGAAGCTGGCCGCCTCGTTCTTCGCTAGTCTCTGCCTTTTGGCCGGGCTACACCCCG
TCCTCGCTGCTGTTACTCAAATCGGGACTGCATGTACCGTCACACCCCTCTCCCCAACCCCCGTTCCGCCGGGCG
GTCGTCCACCGGACGACACCCCTCAATTCCGCGACGCCTACAGCCGCTGCGGCCGTAACGGCTCCATCACGTTCA
CCGAAGGCAACTTCTACATCGGCCAAGTCATGGACGTCACCCTCCAAAACTGCGAAATCAACATCCTCGGCACCA
TCACCTGGAGCACCGACATTCAGTACTGGCTCCGAAACAGCATCGCGGTCACCTACGCCCAGAGGCACACGGCGT
GGAGGATCAGTGGTACGAACATCGCGATTAGGGGCCATGGCAAGGGTTTATTGTTCGGAAATGGCCAGACGTGGT
ACGACCAGAATCGGAACCAGGGTAACCAAATGGGAAGGCCTATTTCGCTCACCATTTGGAGGGCGAACAACGTCT
TCATTGATGGGTTGACCTGGAGGCAGCCACAGTTCTGGTGAGTGGTTTCTTCAAGCGCGTTCCTGTGGGCTGGGC
TCATGTTGAAAATTAGGAACACATTCGTTGCTTACTCGCAGAATGTGACCATGACCAACCTCGATATGGAGGCCA
AGTCCAACTCTCAGTGGACCACGGTCAATACCGACGGCACCAACATCTGGAACTCTCGCGACATCTACATATCTA
ACTGGACCGTCTACAGTGGCGACGTAAGTCCTTCCCTTCACGCCGTCCGATTGGCTCATTATTTCATTGCCTTCT
GTGGGTAGGATTGCATCTGCGCCAAAGGCAACACCACCAACATGCACGTCAAGGACATCACCTGTTACGAGTCTG
GTGGAATGGTCGTGGGCAGCATCGGTTCCGTCGCCTCCCAACCCGACTTTGTCGAGCACGTCCTCTTCGAAAACG
TGCGCCTCAACCACAGCAGCAATGCCGCCTGGATCAAGACCTACCCCGGCCAAGGCTACGTCAACAACGTCACCT
TCCGCAACATCCAGTTCAGCGACGTGAACCAGCCTATCTACATCACCTCGTGCATCTACTCCGGCCAGAACTGCG
ATAGCTCGAGGTTGAATATCAGGAATGTGAGGTGGGAGAACATCACCGGGACGTCGAGGTATAACGTTGGCGCGG
GGATGCATTGTAGTGCTTCGTCTCCGTGCCAGAACTTGACGTTTACGGGCATTGATATTAGGCAGTTCAATGGGG
GAGGTCCGGTGAAGAACTTTTGCTCGAATATTGCGAACCAGGCGACGATGGGGCTCAGGTGCGATGGGCCGTGTC
CGGGCAATTGGCCCCAGCAGTTGAACGGAAACAGATAG
Length 1388