Systematic name | CopciAB_462625 | Strain | Coprinopsis cinerea Okayama 7 |
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Standard name | - | Synonyms | 462625 |
Uniprot id | Functional description | Belongs to the glycosyl hydrolase 28 family | |
Location | scaffold_10:129345..131609 | Strand | - |
Gene length (nt) | 2265 | Transcript length (nt) | 2151 |
CDS length (nt) | 1257 | Protein length (aa) | 418 |
Strain name | Gene / Protein name |
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Neurospora crassa | gh28-2 |
Aspergillus nidulans | AN10274_rhgB |
Strain name | Gene / Protein name | Pident | E-value | Bits |
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Auricularia subglabra | Aurde3_1_1309351 | 32.4 | 2.214E-66 | 233 |
Lentinula edodes W1-26 v1.0 | Lentinedodes1_3839 | 31.9 | 1.357E-66 | 233 |
Lentinula edodes NBRC 111202 | Lenedo1_1220072 | 31.3 | 1.44E-65 | 230 |
Flammulina velutipes | Flave_chr03AA00387 | 31.8 | 2.913E-65 | 229 |
Lentinula edodes B17 | Lened_B_1_1_4785 | 32.4 | 1.448E-60 | 215 |
Ganoderma sp. 10597 SS1 v1.0 | Gansp1_122672 | 33.7 | 1.831E-58 | 209 |
Grifola frondosa | Grifr_OBZ69746 | 31.8 | 2.35E-51 | 188 |
Name | Summary | Attribution | Assay type | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Carbon metabolism | Transcriptional changes along alternative morphogenetic paths of C. cinerea | Xie et al. 2020 | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Complex carbon sources 1 (long incubation) | Expression profiling on diverse complex carbon sources. | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Coprinopsis challenged with bacteria | Transcriptional response to Bacillus subtilis and Escherichia coli. | Kombrink et al. 2018 | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Early development 1 | Time series expression profiling of basidiospore and oidium germination | Hegedus et al. | QuantSeq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Early development 2 | Time series expression profiling of mycelial growth, light induction and fruiting body initiation. | Hegedus et al. | QuantSeq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Fruiting body development | RNA-Seq analysis of fruiting body development | Krizsan et al. 2019 | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Nitrogen sources (12h incubation) | Expression profiling on diverse nitrogen sources. | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Plant biomass (12h incubation) | Expression profiling on diverse plant biomasses as carbon sources. | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Simple and complex carbon and nitrogen sources | Expression profiling on diverse complex carbon and nitrogen sources. | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Simple and complex carbon sources (12h incubation) | Expression profiling on diverse complex carbon sources. | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Starvation induced by water agar transfer | Expression profiling on starvation induced by transfer to water agar | Hegedus et al. | QuantSeq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Straw time series | Time series expression profiling on straw as a carbon source | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Stress conditions 1 | Expression profiling under various stress conditions | Hegedus et al. | QuantSeq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Stress conditions 2 | Expression profiling under various stress conditions | Hegedus et al. | QuantSeq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Systematic name | - |
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Protein id | CopciAB_462625.T0 |
Description | Belongs to the glycosyl hydrolase 28 family |
Analysis | Signature accession | Signature description | InterPro Accession | Start | End |
---|---|---|---|---|---|
Pfam | PF00295 | Glycosyl hydrolases family 28 | IPR000743 | 95 | 396 |
Prediction | Start | End | Score |
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SP(Sec/SPI) | 1 | 22 | 0.9975 |
Domain n | Start | End | Length |
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No records |
Accession | Description |
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IPR012334 | Pectin lyase fold |
IPR011050 | Pectin lyase fold/virulence factor |
IPR000743 | Glycoside hydrolase, family 28 |
Go id | Term | Ontology |
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GO:0004650 | polygalacturonase activity | MF |
GO:0005975 | carbohydrate metabolic process | BP |
KEGG Orthology |
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No records |
COG category | Description |
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G | Belongs to the glycosyl hydrolase 28 family |
Class | Family | Subfamily |
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GH | GH28 |
Group |
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No records |
Arrow shows the origin of gene family containing CopciAB_462625.
Sequence id | CopciAB_462625.T0 |
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Sequence |
>CopciAB_462625.T0 MKLAASFFASLCLLAGLHPVLAAVTQIGTACTVTPLSPTPVPPGGRPPDDTPQFRDAYSRCGRNGSITFTEGNFY IGQVMDVTLQNCEINILGTITWSTDIQYWLRNSIAVTYAQRHTAWRISGTNIAIRGHGKGLLFGNGQTWYDQNRN QGNQMGRPISLTIWRANNVFIDGLTWRQPQFWNTFVAYSQNVTMTNLDMEAKSNSQWTTVNTDGTNIWNSRDIYI SNWTVYSGDDCICAKGNTTNMHVKDITCYESGGMVVGSIGSVASQPDFVEHVLFENVRLNHSSNAAWIKTYPGQG YVNNVTFRNIQFSDVNQPIYITSCIYSGQNCDSSRLNIRNVRWENITGTSRYNVGAGMHCSASSPCQNLTFTGID IRQFNGGGPVKNFCSNIANQATMGLRCDGPCPGNWPQQLNGNR |
Length | 418 |
Sequence id | CopciAB_462625.T0 |
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Sequence |
>CopciAB_462625.T0 ATGAAGCTGGCCGCCTCGTTCTTCGCTAGTCTCTGCCTTTTGGCCGGGCTACACCCCGTCCTCGCTGCTGTTACT CAAATCGGGACTGCATGTACCGTCACACCCCTCTCCCCAACCCCCGTTCCGCCGGGCGGTCGTCCACCGGACGAC ACCCCTCAATTCCGCGACGCCTACAGCCGCTGCGGCCGTAACGGCTCCATCACGTTCACCGAAGGCAACTTCTAC ATCGGCCAAGTCATGGACGTCACCCTCCAAAACTGCGAAATCAACATCCTCGGCACCATCACCTGGAGCACCGAC ATTCAGTACTGGCTCCGAAACAGCATCGCGGTCACCTACGCCCAGAGGCACACGGCGTGGAGGATCAGTGGTACG AACATCGCGATTAGGGGCCATGGCAAGGGTTTATTGTTCGGAAATGGCCAGACGTGGTACGACCAGAATCGGAAC CAGGGTAACCAAATGGGAAGGCCTATTTCGCTCACCATTTGGAGGGCGAACAACGTCTTCATTGATGGGTTGACC TGGAGGCAGCCACAGTTCTGGAACACATTCGTTGCTTACTCGCAGAATGTGACCATGACCAACCTCGATATGGAG GCCAAGTCCAACTCTCAGTGGACCACGGTCAATACCGACGGCACCAACATCTGGAACTCTCGCGACATCTACATA TCTAACTGGACCGTCTACAGTGGCGACGATTGCATCTGCGCCAAAGGCAACACCACCAACATGCACGTCAAGGAC ATCACCTGTTACGAGTCTGGTGGAATGGTCGTGGGCAGCATCGGTTCCGTCGCCTCCCAACCCGACTTTGTCGAG CACGTCCTCTTCGAAAACGTGCGCCTCAACCACAGCAGCAATGCCGCCTGGATCAAGACCTACCCCGGCCAAGGC TACGTCAACAACGTCACCTTCCGCAACATCCAGTTCAGCGACGTGAACCAGCCTATCTACATCACCTCGTGCATC TACTCCGGCCAGAACTGCGATAGCTCGAGGTTGAATATCAGGAATGTGAGGTGGGAGAACATCACCGGGACGTCG AGGTATAACGTTGGCGCGGGGATGCATTGTAGTGCTTCGTCTCCGTGCCAGAACTTGACGTTTACGGGCATTGAT ATTAGGCAGTTCAATGGGGGAGGTCCGGTGAAGAACTTTTGCTCGAATATTGCGAACCAGGCGACGATGGGGCTC AGGTGCGATGGGCCGTGTCCGGGCAATTGGCCCCAGCAGTTGAACGGAAACAGATAG |
Length | 1257 |
Sequence id | CopciAB_462625.T0 |
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Sequence |
>CopciAB_462625.T0 GCTCCTCCATGTCGACACTGAATTTGCTTTGGACTGACTTGGTCTCTACTCTATTTCTCTTCTTATGTCAAAAAA TTCCGTCGATTAAACTAACAATACCGGTTCATCAGGAAAATACGACTCGGGAACGCTCCAAAATCGCCAGCATCG TTCGACTGGAATGTTTCTTGGCTATCGCTTGGCTCTTCGTGACCGGCCTTGCTACTAGGAAGTCGCTTGGGCATT CTAATCTGTAGCCTTTTACCCATCTATCTAGCCGTAACCGTTCTCGCTGGCAAGCGGAAGAAACGGCCAGCGGAA CACGTTTTTCCGGAGGTCATTAGACCTCTTTTGGTGCTTCCCATCGCCAGCCCAATTTCATCGGATTCTCGAGAA AAAGACGATTTTGTCGTCGAAGGGCTAGGATATTGCTTCTCAACGGGCCGCTAATCTTGACTCTTTTCTTCTCTC GGGACGAGACCATTCCGACATTGGATACGAGACCCATTTCGGCCCTCCCAGCAGCCTTCTTTTCTACAACTGACG CTGTCTCATGATCTCCCCCTCTCCAGGCGCTCCAATGCACGGCGGTTCTTGAAGTATACAGACGGACCGCCAATC CCAACCTCGCAGGCTCCATGATTTTCATCGCATGAAAGCCTTCTTTTCTCTATCAGATTTAGAGTTGTCGCACTC GCATCATCCAAATCCGGAACGAAAATCATAACGAGGTTTAACCGTTTAGCGCTCTATTTAAAGTACAACCCCGAA CCACTCCTCTCTCCCAAGCTCGACTGAATCTCATCTCGAGGTTACAGAGTAATGAAGCTGGCCGCCTCGTTCTTC GCTAGTCTCTGCCTTTTGGCCGGGCTACACCCCGTCCTCGCTGCTGTTACTCAAATCGGGACTGCATGTACCGTC ACACCCCTCTCCCCAACCCCCGTTCCGCCGGGCGGTCGTCCACCGGACGACACCCCTCAATTCCGCGACGCCTAC AGCCGCTGCGGCCGTAACGGCTCCATCACGTTCACCGAAGGCAACTTCTACATCGGCCAAGTCATGGACGTCACC CTCCAAAACTGCGAAATCAACATCCTCGGCACCATCACCTGGAGCACCGACATTCAGTACTGGCTCCGAAACAGC ATCGCGGTCACCTACGCCCAGAGGCACACGGCGTGGAGGATCAGTGGTACGAACATCGCGATTAGGGGCCATGGC AAGGGTTTATTGTTCGGAAATGGCCAGACGTGGTACGACCAGAATCGGAACCAGGGTAACCAAATGGGAAGGCCT ATTTCGCTCACCATTTGGAGGGCGAACAACGTCTTCATTGATGGGTTGACCTGGAGGCAGCCACAGTTCTGGAAC ACATTCGTTGCTTACTCGCAGAATGTGACCATGACCAACCTCGATATGGAGGCCAAGTCCAACTCTCAGTGGACC ACGGTCAATACCGACGGCACCAACATCTGGAACTCTCGCGACATCTACATATCTAACTGGACCGTCTACAGTGGC GACGATTGCATCTGCGCCAAAGGCAACACCACCAACATGCACGTCAAGGACATCACCTGTTACGAGTCTGGTGGA ATGGTCGTGGGCAGCATCGGTTCCGTCGCCTCCCAACCCGACTTTGTCGAGCACGTCCTCTTCGAAAACGTGCGC CTCAACCACAGCAGCAATGCCGCCTGGATCAAGACCTACCCCGGCCAAGGCTACGTCAACAACGTCACCTTCCGC AACATCCAGTTCAGCGACGTGAACCAGCCTATCTACATCACCTCGTGCATCTACTCCGGCCAGAACTGCGATAGC TCGAGGTTGAATATCAGGAATGTGAGGTGGGAGAACATCACCGGGACGTCGAGGTATAACGTTGGCGCGGGGATG CATTGTAGTGCTTCGTCTCCGTGCCAGAACTTGACGTTTACGGGCATTGATATTAGGCAGTTCAATGGGGGAGGT CCGGTGAAGAACTTTTGCTCGAATATTGCGAACCAGGCGACGATGGGGCTCAGGTGCGATGGGCCGTGTCCGGGC AATTGGCCCCAGCAGTTGAACGGAAACAGATAGGATCGCTGTTGCCGGCTAGTACTTCGTAATGTACATTGGTCG GTTAGTCGCAAAGCGAGAATTTCTCGTCGAGGTTCTGAGGTGCGAGATGTC |
Length | 2151 |
Sequence id | CopciAB_462625.T0 |
---|---|
Sequence |
>CopciAB_462625.T0 GCTCCTCCATGTCGACACTGAATTTGCTTTGGACTGACTTGGTCTCTACTCTATTTCTCTTCTTATGTCAAAAAA TTCCGTCGATTAAACTAACAATACCGGTTCATCAGGAAAATACGACTCGGGAACGCTCCAAAATCGCCAGCATCG TTCGACTGGAATGTTTCTTGGCTATCGCTTGGCTCTTCGTGACCGGCCTTGCTACTAGGAAGTCGCTTGGGCATT CTAATCTGTAGCCTTTTACCCATCTATCTAGCCGTAACCGTTCTCGCTGGCAAGCGGAAGAAACGGCCAGCGGAA CACGTTTTTCCGGAGGTCATTAGACCTCTTTTGGTGCTTCCCATCGCCAGCCCAATTTCATCGGATTCTCGAGAA AAAGACGATTTTGTCGTCGAAGGGCTAGGATATTGCTTCTCAACGGGCCGCTAATCTTGACTCTTTTCTTCTCTC GGGACGAGACCATTCCGACATTGGATACGAGACCCATTTCGGCCCTCCCAGCAGCCTTCTTTTCTACAACTGACG CTGTCTCATGATCTCCCCCTCTCCAGGCGCTCCAATGCACGGCGGTTCTTGAAGTATACAGACGGACCGCCAATC CCAACCTCGCAGGCTCCATGATTTTCATCGCATGAAAGCCTTCTTTTCTCTATCAGATTTAGAGTTGTCGCACTC GCATCATCCAAATCCGGAACGAAAATCATAACGAGGTTTAACCGTTTAGCGCTCTATTTAAAGTACAACCCCGAA CCACTCCTCTCTCCCAAGCTCGACTGAATCTCATCTCGAGGTTACAGAGTAATGAAGCTGGCCGCCTCGTTCTTC GCTAGTCTCTGCCTTTTGGCCGGGCTACACCCCGTCCTCGCTGCTGTTACTCAAATCGGGACTGCATGTACCGTC ACACCCCTCTCCCCAACCCCCGTTCCGCCGGGCGGTCGTCCACCGGACGACACCCCTCAATTCCGCGACGCCTAC AGCCGCTGCGGCCGTAACGGCTCCATCACGTTCACCGAAGGCAACTTCTACATCGGCCAAGTCATGGACGTCACC CTCCAAAACTGCGAAATCAACATCCTCGGCACCATCACCTGGAGCACCGACATTCAGTACTGGCTCCGAAACAGC ATCGCGGTCACCTACGCCCAGAGGCACACGGCGTGGAGGATCAGTGGTACGAACATCGCGATTAGGGGCCATGGC AAGGGTTTATTGTTCGGAAATGGCCAGACGTGGTACGACCAGAATCGGAACCAGGGTAACCAAATGGGAAGGCCT ATTTCGCTCACCATTTGGAGGGCGAACAACGTCTTCATTGATGGGTTGACCTGGAGGCAGCCACAGTTCTGGTGA GTGGTTTCTTCAAGCGCGTTCCTGTGGGCTGGGCTCATGTTGAAAATTAGGAACACATTCGTTGCTTACTCGCAG AATGTGACCATGACCAACCTCGATATGGAGGCCAAGTCCAACTCTCAGTGGACCACGGTCAATACCGACGGCACC AACATCTGGAACTCTCGCGACATCTACATATCTAACTGGACCGTCTACAGTGGCGACGTAAGTCCTTCCCTTCAC GCCGTCCGATTGGCTCATTATTTCATTGCCTTCTGTGGGTAGGATTGCATCTGCGCCAAAGGCAACACCACCAAC ATGCACGTCAAGGACATCACCTGTTACGAGTCTGGTGGAATGGTCGTGGGCAGCATCGGTTCCGTCGCCTCCCAA CCCGACTTTGTCGAGCACGTCCTCTTCGAAAACGTGCGCCTCAACCACAGCAGCAATGCCGCCTGGATCAAGACC TACCCCGGCCAAGGCTACGTCAACAACGTCACCTTCCGCAACATCCAGTTCAGCGACGTGAACCAGCCTATCTAC ATCACCTCGTGCATCTACTCCGGCCAGAACTGCGATAGCTCGAGGTTGAATATCAGGAATGTGAGGTGGGAGAAC ATCACCGGGACGTCGAGGTATAACGTTGGCGCGGGGATGCATTGTAGTGCTTCGTCTCCGTGCCAGAACTTGACG TTTACGGGCATTGATATTAGGCAGTTCAATGGGGGAGGTCCGGTGAAGAACTTTTGCTCGAATATTGCGAACCAG GCGACGATGGGGCTCAGGTGCGATGGGCCGTGTCCGGGCAATTGGCCCCAGCAGTTGAACGGAAACAGATAGGAT CGCTGTTGCCGGCTAGTACTTCGTAATGTACATTGGTCGGTTAGTCGCAAAGCGAGAATTTCTCGTCGAGGTTCT GAGGTGCGAGATGTC |
Length | 2265 |