CC1G_13656
Coprinopsis cinerea Okoyama 7

General data

Systematic name CC1G_13656 Strain Coprinopsis cinerea A43mutB43mut pab1-1 #326
Standard name - Synonyms
Uniprot id D6RJQ1 Functional description Riboflavin aldehyde-forming enzyme
Location Chr_1:1775639..1777003 Strand +
Gene length (nt) 1365 Transcript length (nt) 1200
CDS length (nt) 759 Protein length (aa) 252

Reciprocal best hits in model fungi

Strain name Gene / Protein name
Neurospora crassa NCU02197

Orthologs in mushroom models

Strain name Gene / Protein name Pident E-value Bits
Agrocybe aegerita Agrae_CAA7266516 55.9 2.849E-80 265
Hypsizygus marmoreus strain 51987-8 Hypma_RDB29499 46.2 4.97E-75 250
Pleurotus ostreatus PC15 PleosPC15_2_1096037 42.9 8.521E-65 220
Lentinula edodes NBRC 111202 Lenedo1_1165591 41.8 4.882E-64 218
Lentinula edodes B17 Lened_B_1_1_3462 42.3 8.558E-64 217
Pleurotus eryngii ATCC 90797 Pleery1_1502629 42.1 1.09E-63 217
Grifola frondosa Grifr_OBZ80003 40.2 5.745E-61 209
Auricularia subglabra Aurde3_1_1271686 44.8 6.356E-57 198
Ganoderma sp. 10597 SS1 v1.0 Gansp1_148241 40.2 7.974E-57 197
Pleurotus ostreatus PC9 PleosPC9_1_54071 40.8 7.72E-46 165
Agaricus bisporus var bisporus (H97) Agabi_varbisH97_2_140389 38.2 4.111E-42 154
Lentinula edodes W1-26 v1.0 Lentinedodes1_1904 62.6 1.488E-38 144
Schizophyllum commune H4-8 Schco3_38802 53.8 2.867E-29 117
Flammulina velutipes Flave_chr08AA00894 27.4 3.227E-16 78

Expression

Name Summary Attribution Assay type
Coprinopsis cinerea mycelia exposed to different biotic and abiotic stress conditions Identification of a Novel Nematotoxic Protein in Coprinopsis cinerea Plaza et al. 2016 RNA-seq
Sample Mean cpm SD cpm Se of mean
O7 + PBS 1088.917 69.2397 39.9756
O7 + A. avenae 1594.9089 132.6511 76.5862
O7 + C. elegans 981.5799 157.6373 91.012
O7 + mechanical damage 934.7043 104.5455 60.3594
O7 + E. coli 1088.0999 46.6375 26.9262
O7 + B. subtilis 1142.5118 155.6608 89.8708

General data

Systematic name -
Protein id 11207
Description Riboflavin aldehyde-forming enzyme

Annotation summary

0 100 200 252

Conserved domains

Analysis Signature accession Signature description InterPro Accession Start End
CDD cd22191 DPBB_RlpA_EXP_N-like - 150 249
Pfam PF03330 Lytic transglycolase IPR009009 148 245

SignalP

Prediction Start End Score
SP(Sec/SPI) 1 20 0.7735

Transmembrane domains

Domain n Start End Length
1 5 27 22

InterPro

Accession Description
IPR036908 RlpA-like domain superfamily
IPR009009 RlpA-like protein, double-psi beta-barrel domain

GO

Go id Term Ontology
No records

KEGG

KEGG Orthology
No records

EggNOG

COG category Description
S Lytic transglycolase

CAZy

Class Family Subfamily
EXPN EXPN

Transcription factor

Group
No records

Conservation of CC1G_13656 across fungi.

Arrow shows the origin of gene family containing CC1G_13656.

Protein

Sequence id 11207
Sequence >11207
MPSFVNAVVVFLAAVASVNGLVTPHIARHNAHHRSIAARVAEPQVQPALVPRAPTATLRKRCRPRLVFVTPSPSP
STAPAPSPEVPPVNVAPSPSPEPQPEPEQPAPVPSPEAPPAPVEPAPQPAPQQPAPQPGNGGGNQPGFMSGTQTG
QGTFYDAGLGACGIVNTNADYIAAVSHLLFDNYPGYNRVNPNTNPLCGRTVTATYQGRSVTVAITDRCEGCAVTD
LDFTPSAFAQLADHSLGRISGVTWHWN
Length 252

Coding

Sequence id CC1G_13656T0
Sequence >CC1G_13656T0
ATGCCTTCCTTTGTCAACGCTGTCGTCGTTTTTCTGGCCGCCGTCGCCTCCGTCAACGGCCTCGTCACTCCCCAC
ATCGCCAGGCACAACGCGCACCACAGGTCAATCGCTGCCCGCGTCGCTGAGCCTCAGGTCCAGCCCGCGCTCGTC
CCCAGGGCTCCAACAGCCACTCTCAGGAAGCGATGCAGGCCCAGGCTCGTCTTCGTTACCCCCTCTCCTTCCCCC
AGCACCGCCCCAGCTCCCAGCCCTGAGGTCCCTCCTGTCAACGTTGCACCCTCCCCGTCCCCAGAGCCCCAGCCT
GAGCCTGAGCAGCCCGCACCTGTCCCGTCCCCGGAGGCCCCTCCTGCACCTGTCGAACCTGCTCCCCAACCTGCC
CCACAGCAACCTGCCCCACAGCCCGGCAACGGCGGCGGTAACCAGCCAGGGTTCATGTCTGGCACACAGACCGGC
CAAGGCACCTTCTACGACGCTGGTCTTGGTGCCTGCGGTATTGTGAACACCAACGCCGACTACATTGCTGCCGTC
TCCCACCTCCTCTTCGATAACTACCCCGGATACAACCGTGTCAACCCTAACACCAACCCCCTCTGCGGCAGGACT
GTCACCGCTACCTACCAAGGAAGGAGCGTCACCGTCGCCATCACTGACCGCTGCGAGGGCTGTGCAGTCACTGAC
CTTGACTTCACCCCTTCCGCGTTCGCCCAACTTGCCGACCACAGCCTCGGCCGCATCAGCGGTGTTACCTGGCAC
TGGAAC
Length 759

Transcript

Sequence id CC1G_13656T0
Sequence >CC1G_13656T0
CTTAAGTTATCCGGTCTCTCTTTTTTTCATCCCTCACCGCTCGTTCTTCAGCCATGCCTTCCTTTGTCAACGCTG
TCGTCGTTTTTCTGGCCGCCGTCGCCTCCGTCAACGGCCTCGTCACTCCCCACATCGCCAGGCACAACGCGCACC
ACAGGTCAATCGCTGCCCGCGTCGCTGAGCCTCAGGTCCAGCCCGCGCTCGTCCCCAGGGCTCCAACAGCCACTC
TCAGGAAGCGATGCAGGCCCAGGCTCGTCTTCGTTACCCCCTCTCCTTCCCCCAGCACCGCCCCAGCTCCCAGCC
CTGAGGTCCCTCCTGTCAACGTTGCACCCTCCCCGTCCCCAGAGCCCCAGCCTGAGCCTGAGCAGCCCGCACCTG
TCCCGTCCCCGGAGGCCCCTCCTGCACCTGTCGAACCTGCTCCCCAACCTGCCCCACAGCAACCTGCCCCACAGC
CCGGCAACGGCGGCGGTAACCAGCCAGGGTTCATGTCTGGCACACAGACCGGCCAAGGCACCTTCTACGACGCTG
GTCTTGGTGCCTGCGGTATTGTGAACACCAACGCCGACTACATTGCTGCCGTCTCCCACCTCCTCTTCGATAACT
ACCCCGGATACAACCGTGTCAACCCTAACACCAACCCCCTCTGCGGCAGGACTGTCACCGCTACCTACCAAGGAA
GGAGCGTCACCGTCGCCATCACTGACCGCTGCGAGGGCTGTGCAGTCACTGACCTTGACTTCACCCCTTCCGCGT
TCGCCCAACTTGCCGACCACAGCCTCGGCCGCATCAGCGGTGTTACCTGGCACTGGAACTAGGTTTCCAACCTCG
CAATAACCAACCCTCATAGAAACTCGTAACGAGTTCAAGCATACCCAAGCTTTCTCCTCTCTCTATCATTTCCTT
TCCAAGAAAACGCTACTGCCAGCTCAGTGGCGCTATTGCAATCATCAGGCTTTCTGGCACAAGTCGACACACACT
TGCAAAGGGCGCTCTCCGTGCGAGCGATCGTTCACCAGTTGGCTGCTTGCAGCTAACCTGACGTTCGAACGACTG
GCCTTGTCATAGTTTAGTTTGCACTCGCTTTCGAGCCAGACTCGTTAGGATCATCACTGTCAGTCTTTTGTAACC
TCAGTCATGTACTTGCTGTAGCCATGTATCATGCTTTCACTCTCTTGTTCTCGTCCTGGAATAAACTCATATGTT
Length 1200

Gene

Sequence id CC1G_13656T0
Sequence >CC1G_13656T0
CTTAAGTTATCCGGTCTCTCTTTTTTTCATCCCTCACCGCTCGTTCTTCAGCCATGCCTTCCTTTGTCAACGCTG
TCGTCGTTTTTCTGGCCGCCGTCGCCTCCGTCAACGGCCTCGTCACTCCCCACATCGCCAGGCACAACGCGCACC
ACAGGTCAATCGCTGCCCGCGTCGCTGAGCCTCAGGTCCAGCCCGCGCTCGTCCCCAGGGCTCCAACAGCCACTC
TCAGGAAGCGATGCAGGCCCAGGCTCGTCTTCGTTACCCCCTCTCCTTCCCCCAGCACCGCCCCAGCTCCCAGCC
CTGAGGTCCCTCCTGTCAACGTTGCACCCTCCCCGTCCCCAGAGCCCCAGCCTGAGCCTGAGCAGCCCGCACCTG
TCCCGTCCCCGGAGGCCCCTCCTGCACCTGTCGAACCTGCTCCCCAACCTGCCCCACAGCAACCTGCCCCACAGC
CCGGCAACGGCGGCGGTAACCAGCCAGGGTTCATGTCTGGCACACAGACCGGCCAAGGCACCTTCTACGACGGTA
TGCAGCCTGATCTACTTGAGATGCACTTTTTCTAACCTTTTTTCTTCGTCCCAGCTGGTCTTGGTGCCTGCGGTA
TTGTGAACACCAACGCCGACTACATTGCTGCCGTCTCCCACCTCCTCTTCGATAACTACCCGTGCGTATTATCTT
TTAATGAATGAACTAGTCCTGATTACCATTGATCTTCCAGCGGATACAACCGTGTCAACCCTAACACCAACCCCC
TCTGCGGCAGGACTGTCACCGCTACCTGTACGTCCATGTTATTTCCTTGTCCATCGAATTGCTGTGTTCAACGAC
TTCTAGACCAAGGAAGGAGCGTCACCGTCGCCATCACTGACCGCTGCGAGGGCTGTGCAGTCACTGACCTTGACT
TCACCCCTTCCGCGTTCGCCCAACTTGCCGACCACAGCCTCGGCCGCATCAGCGGTGTTACCTGGCACTGGAACT
AGGTTTCCAACCTCGCAATAACCAACCCTCATAGAAACTCGTAACGAGTTCAAGCATACCCAAGCTTTCTCCTCT
CTCTATCATTTCCTTTCCAAGAAAACGCTACTGCCAGCTCAGTGGCGCTATTGCAATCATCAGGCTTTCTGGCAC
AAGTCGACACACACTTGCAAAGGGCGCTCTCCGTGCGAGCGATCGTTCACCAGTTGGCTGCTTGCAGCTAACCTG
ACGTTCGAACGACTGGCCTTGTCATAGTTTAGTTTGCACTCGCTTTCGAGCCAGACTCGTTAGGATCATCACTGT
CAGTCTTTTGTAACCTCAGTCATGTACTTGCTGTAGCCATGTATCATGCTTTCACTCTCTTGTTCTCGTCCTGGA
ATAAACTCATATGTT
Length 1365