CopciAB_359952
Coprinopsis cinerea A43mutB43mut pab1-1 #326

General data

Systematic name CopciAB_359952 Strain Coprinopsis cinerea Okayama 7
Standard name - Synonyms 359952
Uniprot id Functional description Lytic transglycolase
Location scaffold_1:2561139..2562472 Strand -
Gene length (nt) 1334 Transcript length (nt) 1169
CDS length (nt) 759 Protein length (aa) 252

Reciprocal best hits in model fungi

Strain name Gene / Protein name
Neurospora crassa NCU02197

Orthologs in mushroom models

Strain name Gene / Protein name Pident E-value Bits
Agrocybe aegerita Agrae_CAA7266516 55.9 2.849E-80 265
Hypsizygus marmoreus strain 51987-8 Hypma_RDB29499 46.2 4.97E-75 250
Pleurotus ostreatus PC15 PleosPC15_2_1096037 42.9 8.521E-65 220
Lentinula edodes NBRC 111202 Lenedo1_1165591 41.8 4.882E-64 218
Lentinula edodes B17 Lened_B_1_1_3462 42.3 8.558E-64 217
Pleurotus eryngii ATCC 90797 Pleery1_1502629 42.1 1.09E-63 217
Grifola frondosa Grifr_OBZ80003 40.2 5.745E-61 209
Auricularia subglabra Aurde3_1_1271686 44.8 6.356E-57 198
Ganoderma sp. 10597 SS1 v1.0 Gansp1_148241 40.2 7.974E-57 197
Pleurotus ostreatus PC9 PleosPC9_1_54071 40.8 7.72E-46 165
Agaricus bisporus var bisporus (H97) Agabi_varbisH97_2_140389 38.2 4.111E-42 154
Lentinula edodes W1-26 v1.0 Lentinedodes1_1904 62.6 1.488E-38 144
Schizophyllum commune H4-8 Schco3_38802 53.8 2.867E-29 117
Flammulina velutipes Flave_chr08AA00894 27.4 3.227E-16 78

Expression

Name Summary Attribution Assay type
Carbon metabolism Transcriptional changes along alternative morphogenetic paths of C. cinerea Xie et al. 2020 RNA-Seq
Sample Mean cpm SD cpm Se of mean
sclerotia 909.209 59.4385 34.3168
oidia 403.9328 34.1914 19.7404
vegetative_mycelium 473.9914 20.0484 11.575
primordia 356.7927 21.1269 12.1976
hyphal_knot 418.8446 85.8276 49.5526
young_fruiting_body 983.1769 69.5104 40.1319
Complex carbon sources 1 (long incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control - glucose 252.3968 58.1647 33.5814
Wheat bran 199.3702 28.4648 16.4342
Horse manure 247.9976 64.2006 37.0662
Oak leaves 436.3272 208.9687 120.6481
Hay 303.6154 95.2943 55.0182
Corn stalk 331.2995 120.4096 69.5185
Pectine 226.5871 16.0183 9.2482
Microcrystalline cellulose 187.4648 7.0387 4.0638
Xylose 265.3473 62.712 36.2068
Cellobiose 297.0325 15.4019 8.8923
Lignin 214.6481 10.8189 6.2463
Apple peels 281.7319 26.0047 15.0138
Coprinopsis challenged with bacteria Transcriptional response to Bacillus subtilis and Escherichia coli. Kombrink et al. 2018 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control 149.6596 12.0861 6.9779
Bsubtilis 165.6443 42.4633 24.5162
Ecoli 137.9081 22.6734 13.0905
Early development 1 Time series expression profiling of basidiospore and oidium germination Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
BS 0h 18.9846 2.3106 1.334
BS 4h 254.7669 43.905 25.3485
BS 8h 695.6521 121.6154 70.2147
BS 12h 486.5881 146.6721 84.6812
Oidia 0 h 109.4536 24.9717 14.4174
Oidia 18 h 1166.092 198.6116 114.6685
Sclerotia 1082.3847 269.4581 155.5717
Early development 2 Time series expression profiling of mycelial growth, light induction and fruiting body initiation. Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
DM 12h 769.1111 106.4042 61.4325
DM 36h 1053.1547 75.6079 43.6522
DM 60h 992.1549 82.484 47.6221
DM 84h 1055.5383 35.3666 20.4189
DM 108h 1238.1226 39.4572 22.7806
DM 132h 1279.3447 115.3096 66.574
DM 156hAE 1179.317 106.2248 61.3289
ELI1hAE 754.9891 97.7096 56.4127
ELI2hAE 861.2277 123.9063 71.5374
LI2hAE 879.4822 209.9531 121.2165
LI6hAE 938.2687 63.8384 36.8571
LI12hAE 849.2835 70.5206 40.7151
LI18hAE 836.952 177.3395 102.387
LI 24hAE 1222.0357 76.9622 44.4341
DM 156hAM 1485.2926 33.9979 19.6287
ELI1hAM 719.6273 123.0843 71.0628
ELI2hAM 728.1451 30.299 17.4931
LI2hAM 791.4345 136.8581 79.0151
LI6hAM 951.3872 64.1388 37.0305
LI12hAM 842.4876 38.2861 22.1045
LI18hAM 976.3587 167.3033 96.5926
LI 24hAM 1968.8723 261.8205 151.1621
LI 24hHK 1331.4399 107.3219 61.9623
L/D 6h 1646.301 175.6348 101.4028
L/D 12h 1656.3352 302.1571 174.4505
L/D 18h 1699.2154 425.6688 245.76
L/D 24h 1337.8289 49.0762 28.3342
Fruiting body development RNA-Seq analysis of fruiting body development Krizsan et al. 2019 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Vegetative mycelium 164.877 12.429 7.1759
Hyphal knots 227.073 43.9923 25.399
Primordium 1 211.8412 22.2491 12.8455
Primordium 2 196.6576 32.744 18.9047
Young Fruiting body cap 794.2037 498.3637 287.7304
Younf fruiting body gill 201.2399 91.2767 52.6986
Young fruiting body stipe 576.992 126.303 72.9211
Mature fruiting body cap_gill 1673.1854 658.5315 380.2034
Mature fruiting body stipe 3141.4489 520.1767 300.3242
Nitrogen sources (12h incubation) Expression profiling on diverse nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Complete medium - control 456.0649 149.354 86.2296
NH4NO3 241.4354 46.4656 26.8269
Proline 317.3139 33.1874 19.1607
Tryptophan 272.3412 70.0834 40.4627
Isoleucin 293.9355 40.4466 23.3518
Arginine 305.3727 20.3544 11.7516
Metionine 431.963 23.6223 13.6383
NaNO3 483.4302 41.6773 24.0624
Plant biomass (12h incubation) Expression profiling on diverse plant biomasses as carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 456.0649 149.354 86.2296
Citrus peel 801.2014 258.771 149.4015
Poplar leaves 382.8918 87.9406 50.7725
Typha leaves 598.8022 181.6899 104.8987
Overwintered Salix leaves 597.0933 260.8026 150.5744
Reed flowering 949.0095 304.8454 176.0026
Tigernut 587.6888 32.0594 18.5095
Energy cane 577.2696 124.0895 71.6431
Guar gum 452.87 426.587 246.2901
Apple peels 471.0887 12.076 6.9721
Cellobiose 403.4917 74.3172 42.9071
Corn stalk 356.8701 31.0168 17.9076
Horse manure 308.9295 24.7302 14.278
Lignin 714.5387 326.5076 188.5092
Microcrystalline cellulose 546.2533 205.6326 118.7221
Oak leaves 325.8072 42.2818 24.4114
Pectin esterified 413.3607 153.0885 88.3857
Poplar sawdust 250.7646 6.169 3.5617
Wheat bran 303.3846 90.4491 52.2208
Chlamydomonas reinhardtii 380.6557 67.4183 38.924
Vertatryl alcohol 258.2084 10.0051 5.7765
Furfural 311.3 28.7426 16.5945
Autoclaved mycelium 373.505 22.0327 12.7206
Simple and complex carbon and nitrogen sources Expression profiling on diverse complex carbon and nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 191.17 14.8054 8.5479
Ribose 157.3871 6.9546 4.0152
Mannose 164.9179 7.8161 5.5268
Fructose 190.9232 28.3338 16.3585
Arabinose 156.6696 38.263 22.0911
Xylose 179.652 4.68 2.702
Galacturonic acid 159.0561 2.9781 1.7194
Rhamnogalacturonan 196.2057 24.8859 14.3679
Pectin esterified 187.1588 23.4287 13.5266
Polygalacturonic acid 189.4779 18.7344 10.8163
Sodium acetate 173.8997 13.3849 7.7278
No nitrogen 177.161 10.5537 6.0932
BSA 184.199 19.9273 11.505
Glutamine 186.2371 25.5 14.7224
No phosphate 198.1745 19.8088 11.4366
No carbon 165.73 23.1399 16.3624
No sulphur 157.4866 46.2566 26.7063
Simple and complex carbon sources (12h incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 456.0649 149.354 86.2296
Amylose 191.7619 31.3831 18.1191
Fucose 290.2124 74.8778 43.2307
Galactose 222.3101 27.9385 16.1303
Lactose 280.3928 17.1848 9.9216
Maltose 262.9528 34.7967 20.0899
Mannitol 258.7347 26.5809 15.3465
Rhamnose 371.5463 123.2434 71.1546
Sorbitol 242.6564 10.7728 6.2197
Trehalose 353.2871 126.938 73.2877
Glycerol 460.7503 322.4233 186.1512
Glucuronic acid 195.8224 4.3145 2.491
Arabinan 388.1009 227.3822 131.2792
Galactan 461.1101 60.6557 35.0196
Galactomannan 341.2484 235.6324 136.0425
Glucan 495.1312 173.9375 100.4229
Xylan 253.7073 77.4925 44.7403
Xyloglucan 187.6031 29.2328 16.8776
Arabinogalactan 189.6045 11.4912 6.6345
Pectin 407.577 53.9579 31.1526
Rhamnogalacturonan 480.5008 143.5309 82.8676
Polygalacturonic acid 263.5755 45.5716 26.3108
Mannan 260.2279 40.9974 23.6698
Amylopectin 502.1472 221.9795 128.1599
Inulin 243.1644 12.7665 7.3707
BSA 590.5035 122.7077 70.8453
Starvation induced by water agar transfer Expression profiling on starvation induced by transfer to water agar Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Control 992.1549 82.484 47.6221
2h WAT 794.2783 30.2641 17.473
4h WAT 951.9145 52.5908 30.3633
8h WAT 1261.7181 114.1791 65.9213
16h WAT 1197.8371 171.5512 99.0451
24h WAT 1128.1669 35.1051 20.2679
WAT hyphal knot -30h 773.8313 66.6764 38.4957
WAT hyphal knot -22h 705.7107 8.677 5.0097
WAT hyphal knot -15h 797.3541 9.6112 5.549
WAT hyphal knot -7.5h 732.5374 97.9654 56.5604
WAT hyphal knot 792.6595 60.1545 34.7302
WAT hyphal knot +7.5h 712.705 97.0678 56.0421
Straw time series Time series expression profiling on straw as a carbon source Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 783.2051 90.5383 52.2723
Straw 3h 564.5467 106.5007 61.4882
Straw 6h 571.1852 151.674 87.569
Straw 12h 488.3803 98.5155 56.8779
Straw 24h 732.3181 312.0061 180.1368
Stress conditions 1 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 1457.2844 200.8745 115.9749
Frost (-20C, 30min) 1182.5414 95.3453 55.0477
Heat shock (47C, 2h) 1062.4108 3.8511 2.2234
High CO2 1360.0409 185.2417 106.9493
Drought (4% agar, 12h) 738.1767 13.5519 7.8242
Oxidative (1mM H2O2, 3h) 872.5968 36.4355 21.0361
Acidic (pH4, 3h) 1168.5756 126.1125 72.8111
Alkaline (pH9, 3h) 1027.7883 75.8616 43.7987
Osmotic (sorbitol 2h) 856.0205 88.1192 50.8756
CongoRed (3h) 1219.4695 146.2218 84.4212
Cobalt chloride control 1875.0001 280.9914 162.2304
Cobalt chloride 2mM 2082.3856 297.0178 171.4833
Stress conditions 2 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 1044.4695 254.1322 146.7233
Cold stimulation 762.918 201.5679 116.3753
Scratched surface 657.0824 28.6426 16.5368
Ca2+, 200mM, 24h 786.6798 63.9471 36.9198
Cu2+, 2mM, 6h 953.5607 125.7206 72.5848
Voriconazole 1206.6455 130.1256 75.1281
Trichoderma interaction, early 612.3573 42.9897 24.8201
Trichoderma interaction 60h 456.4776 88.4334 51.0571
Cobalt chloride 2mM repeat 771.4275 158.9524 91.7712
Hypoxia 1151.2844 174.9427 101.0032
Hypoxia control 1048.3621 155.2233 89.6182
Protoplastation control 977.7726 36.3844 25.7277
Protoplastation 3.5h 790.0392 82.8767 58.6027
Protoplastation 1.5h 1014.7273 89.6485 63.3911

General data

Systematic name -
Protein id CopciAB_359952.T0
Description Lytic transglycolase

Annotation summary

0 100 200 252

Conserved domains

Analysis Signature accession Signature description InterPro Accession Start End
CDD cd22191 DPBB_RlpA_EXP_N-like - 150 249
Pfam PF03330 Lytic transglycolase IPR009009 148 245

SignalP

Prediction Start End Score
SP(Sec/SPI) 1 20 0.7735

Transmembrane domains

Domain n Start End Length
1 5 27 22

InterPro

Accession Description
IPR036908 RlpA-like domain superfamily
IPR009009 RlpA-like protein, double-psi beta-barrel domain

GO

Go id Term Ontology
No records

KEGG

KEGG Orthology
No records

EggNOG

COG category Description
S Lytic transglycolase

CAZy

Class Family Subfamily
EXPN EXPN

Transcription factor

Group
No records

Conservation of CopciAB_359952 across fungi.

Arrow shows the origin of gene family containing CopciAB_359952.

Protein

Sequence id CopciAB_359952.T0
Sequence >CopciAB_359952.T0
MPSFVNAVVVFLAAVASVNGLVTPHIARHNAHHRSIAARVAEPQVQPALVPRAPTATLRKRCRPRLVFVTPSPSP
STAPAPSPEVPPVNVAPSPSPEPQPEPEQPAPVPSPEAPPAPVEPAPQPAPQQPAPQPGNGGGNQPGFMSGTQTG
QGTFYDAGLGACGIVNTNADYIAAVSHLLFDNYPGYNRVNPNTNPLCGRTVTATYQGRSVTVAITDRCEGCAVTD
LDFTPSAFAQLADHSLGRISGVTWHWN
Length 252

Coding

Sequence id CopciAB_359952.T0
Sequence >CopciAB_359952.T0
ATGCCTTCCTTTGTCAACGCTGTCGTCGTTTTCCTGGCCGCCGTCGCCTCCGTCAACGGCCTCGTCACTCCCCAC
ATCGCCAGGCACAACGCGCACCACAGGTCAATCGCTGCCCGCGTCGCTGAGCCTCAGGTCCAGCCCGCGCTCGTC
CCCAGGGCTCCAACAGCCACTCTCAGGAAGCGATGCAGGCCCAGGCTCGTATTCGTTACCCCCTCTCCTTCCCCC
AGCACCGCCCCAGCTCCCAGCCCTGAGGTCCCTCCTGTCAACGTTGCACCCTCCCCGTCCCCAGAGCCCCAGCCT
GAGCCTGAGCAGCCCGCACCTGTCCCGTCCCCGGAGGCCCCTCCTGCACCTGTCGAACCTGCTCCCCAACCTGCC
CCACAGCAACCTGCCCCACAGCCCGGCAACGGCGGCGGTAACCAGCCAGGGTTCATGTCTGGCACACAGACCGGC
CAAGGCACCTTCTACGACGCTGGTCTTGGTGCCTGCGGTATTGTGAACACCAACGCCGACTACATTGCTGCCGTC
TCCCACCTCCTCTTCGATAACTACCCCGGATACAACCGTGTCAACCCTAACACCAACCCCCTCTGCGGCAGGACT
GTCACCGCTACCTACCAAGGAAGGAGCGTCACCGTCGCCATCACTGACCGCTGCGAGGGCTGTGCAGTCACTGAC
CTTGACTTCACCCCTTCCGCGTTCGCCCAACTTGCCGACCACAGCCTCGGCCGCATCAGCGGTGTTACCTGGCAC
TGGAACTAG
Length 759

Transcript

Sequence id CopciAB_359952.T0
Sequence >CopciAB_359952.T0
ACCGCTCGTTCTTCAGCCATGCCTTCCTTTGTCAACGCTGTCGTCGTTTTCCTGGCCGCCGTCGCCTCCGTCAAC
GGCCTCGTCACTCCCCACATCGCCAGGCACAACGCGCACCACAGGTCAATCGCTGCCCGCGTCGCTGAGCCTCAG
GTCCAGCCCGCGCTCGTCCCCAGGGCTCCAACAGCCACTCTCAGGAAGCGATGCAGGCCCAGGCTCGTATTCGTT
ACCCCCTCTCCTTCCCCCAGCACCGCCCCAGCTCCCAGCCCTGAGGTCCCTCCTGTCAACGTTGCACCCTCCCCG
TCCCCAGAGCCCCAGCCTGAGCCTGAGCAGCCCGCACCTGTCCCGTCCCCGGAGGCCCCTCCTGCACCTGTCGAA
CCTGCTCCCCAACCTGCCCCACAGCAACCTGCCCCACAGCCCGGCAACGGCGGCGGTAACCAGCCAGGGTTCATG
TCTGGCACACAGACCGGCCAAGGCACCTTCTACGACGCTGGTCTTGGTGCCTGCGGTATTGTGAACACCAACGCC
GACTACATTGCTGCCGTCTCCCACCTCCTCTTCGATAACTACCCCGGATACAACCGTGTCAACCCTAACACCAAC
CCCCTCTGCGGCAGGACTGTCACCGCTACCTACCAAGGAAGGAGCGTCACCGTCGCCATCACTGACCGCTGCGAG
GGCTGTGCAGTCACTGACCTTGACTTCACCCCTTCCGCGTTCGCCCAACTTGCCGACCACAGCCTCGGCCGCATC
AGCGGTGTTACCTGGCACTGGAACTAGGTTTCCAACCTCGCAATAACCAACCCTCATAGAAACTCGTAACGAGTT
CAAGCATACCCAAGCTTTCTCCTCTCTCTATCATTTCCTTTCCAAGAAAACGCTACTGCCAGCTCAGTGGCGCTA
TTGCAATCATCAGGCTTTCTGGCACAAGTCGACACACACTTGCAAAGGGCGCTCTCCGTGCGAGCGATCGTTCAC
CAGTTGGCTGCTTGCAGCTAACCTGACGTTCGAACGACTGGCCTTGTCATAGTTTAGTTTGCACTCGCTTTCGAG
CCAGACTCGTTAGGATCATCACTGTCAGTCTTTTGTAACCTCAGTCATGTACTTGCTGTAGCCATGTATCATGCT
TTCACTCTCTTGTTCTCGTCCTGGAATAAACTCATATGTTGTAT
Length 1169

Gene

Sequence id CopciAB_359952.T0
Sequence >CopciAB_359952.T0
ACCGCTCGTTCTTCAGCCATGCCTTCCTTTGTCAACGCTGTCGTCGTTTTCCTGGCCGCCGTCGCCTCCGTCAAC
GGCCTCGTCACTCCCCACATCGCCAGGCACAACGCGCACCACAGGTCAATCGCTGCCCGCGTCGCTGAGCCTCAG
GTCCAGCCCGCGCTCGTCCCCAGGGCTCCAACAGCCACTCTCAGGAAGCGATGCAGGCCCAGGCTCGTATTCGTT
ACCCCCTCTCCTTCCCCCAGCACCGCCCCAGCTCCCAGCCCTGAGGTCCCTCCTGTCAACGTTGCACCCTCCCCG
TCCCCAGAGCCCCAGCCTGAGCCTGAGCAGCCCGCACCTGTCCCGTCCCCGGAGGCCCCTCCTGCACCTGTCGAA
CCTGCTCCCCAACCTGCCCCACAGCAACCTGCCCCACAGCCCGGCAACGGCGGCGGTAACCAGCCAGGGTTCATG
TCTGGCACACAGACCGGCCAAGGCACCTTCTACGACGGTATGCAGCCTGATCTACTTGAGATGCACTTTTTCTAA
CCTTTTTTCTTCGTCCCAGCTGGTCTTGGTGCCTGCGGTATTGTGAACACCAACGCCGACTACATTGCTGCCGTC
TCCCACCTCCTCTTCGATAACTACCCGTGCGTATTATCTTTTAATGAATGAACTAGTCCTGATTACCATTGATCT
TCCAGCGGATACAACCGTGTCAACCCTAACACCAACCCCCTCTGCGGCAGGACTGTCACCGCTACCTGTACGTCC
ATGTTATTTCCTTGTCCATCGAATTGCTGTGTTCAACGACTTCTAGACCAAGGAAGGAGCGTCACCGTCGCCATC
ACTGACCGCTGCGAGGGCTGTGCAGTCACTGACCTTGACTTCACCCCTTCCGCGTTCGCCCAACTTGCCGACCAC
AGCCTCGGCCGCATCAGCGGTGTTACCTGGCACTGGAACTAGGTTTCCAACCTCGCAATAACCAACCCTCATAGA
AACTCGTAACGAGTTCAAGCATACCCAAGCTTTCTCCTCTCTCTATCATTTCCTTTCCAAGAAAACGCTACTGCC
AGCTCAGTGGCGCTATTGCAATCATCAGGCTTTCTGGCACAAGTCGACACACACTTGCAAAGGGCGCTCTCCGTG
CGAGCGATCGTTCACCAGTTGGCTGCTTGCAGCTAACCTGACGTTCGAACGACTGGCCTTGTCATAGTTTAGTTT
GCACTCGCTTTCGAGCCAGACTCGTTAGGATCATCACTGTCAGTCTTTTGTAACCTCAGTCATGTACTTGCTGTA
GCCATGTATCATGCTTTCACTCTCTTGTTCTCGTCCTGGAATAAACTCATATGTTGTAT
Length 1334