CopciAB_128386
Coprinopsis cinerea A43mutB43mut pab1-1 #326

General data

Systematic name CopciAB_128386 Strain Coprinopsis cinerea Okayama 7
Standard name - Synonyms 128386
Uniprot id Functional description
Location scaffold_3:2996493..2998030 Strand +
Gene length (nt) 1538 Transcript length (nt) 1190
CDS length (nt) 978 Protein length (aa) 325

Reciprocal best hits in model fungi

Strain name Gene / Protein name

Orthologs in mushroom models

Strain name Gene / Protein name Pident E-value Bits
0

Expression

Name Summary Attribution Assay type
Carbon metabolism Transcriptional changes along alternative morphogenetic paths of C. cinerea Xie et al. 2020 RNA-Seq
Sample Mean cpm SD cpm Se of mean
sclerotia 12.8146 0.9288 0.5362
oidia 23.489 1.3503 0.7796
vegetative_mycelium 26.2942 2.146 1.239
primordia 64.8491 3.8202 2.2056
hyphal_knot 14.2722 1.4816 0.8554
young_fruiting_body 144.5699 4.7326 2.7324
Complex carbon sources 1 (long incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control - glucose 24.9671 11.5045 6.6421
Wheat bran 11.5758 0.9539 0.5507
Horse manure 17.4682 6.511 3.7592
Oak leaves 10.3612 0.9426 0.5442
Hay 13.7343 1.8787 1.0847
Corn stalk 11.7541 0.8881 0.5127
Pectine 12.9349 0.5457 0.3151
Microcrystalline cellulose 14.7012 1.9087 1.102
Xylose 44.4659 13.5133 7.8019
Cellobiose 70.3306 3.191 1.8423
Lignin 16.5644 6.7212 3.8805
Apple peels 7.8765 0.7563 0.4366
Coprinopsis challenged with bacteria Transcriptional response to Bacillus subtilis and Escherichia coli. Kombrink et al. 2018 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control 7.4061 0.6825 0.3941
Bsubtilis 5.5274 0.3496 0.2018
Ecoli 9.8767 1.0747 0.6205
Early development 1 Time series expression profiling of basidiospore and oidium germination Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
BS 0h 2.35 0.8681 0.5012
BS 4h 3.8852 0.6447 0.3722
BS 8h 2.7758 0.3354 0.1936
BS 12h 1.8588 0.5652 0.3263
Oidia 0 h 1.8353 0.3317 0.1915
Oidia 18 h 2.4425 0.7107 0.4103
Sclerotia 0.1388 0.2404 0.1388
Early development 2 Time series expression profiling of mycelial growth, light induction and fruiting body initiation. Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
DM 12h 2.1073 0.6406 0.3698
DM 36h 2.6526 0.1133 0.0654
DM 60h 2.584 0.4301 0.2483
DM 84h 2.5756 0.7501 0.4331
DM 108h 3.072 0.3662 0.2114
DM 132h 2.7629 0.3348 0.1933
DM 156hAE 11.8146 1.07 0.6177
ELI1hAE 5.0474 2.8005 1.6169
ELI2hAE 4.5024 1.6175 0.9339
LI2hAE 4.9859 1.5153 0.8749
LI6hAE 12.3969 2.6426 1.5257
LI12hAE 4.0501 2.3139 1.3359
LI18hAE 5.1903 1.9893 1.1485
LI 24hAE 17.6633 3.2673 1.8864
DM 156hAM 3.2551 1.6834 0.9719
ELI1hAM 1.6397 0.9005 0.5199
ELI2hAM 1.4488 0.7572 0.4371
LI2hAM 1.9751 0.5243 0.3027
LI6hAM 2.2154 0.3642 0.2103
LI12hAM 2.8022 1.8452 1.0653
LI18hAM 2.5399 0.5594 0.323
LI 24hAM 4.7884 1.9183 1.1075
LI 24hHK 5.8307 0.9246 0.5338
L/D 6h 8.7995 1.6087 0.9288
L/D 12h 16.1046 4.0681 2.3487
L/D 18h 13.8956 10.7302 6.1951
L/D 24h 14.9415 0.789 0.4555
Fruiting body development RNA-Seq analysis of fruiting body development Krizsan et al. 2019 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Vegetative mycelium 6.5443 0.8492 0.4903
Hyphal knots 8.6239 2.9012 1.675
Primordium 1 25.2796 9.2509 5.341
Primordium 2 30.7009 3.2793 1.8933
Young Fruiting body cap 81.9174 4.7995 2.771
Younf fruiting body gill 56.1816 29.2775 16.9034
Young fruiting body stipe 54.6731 4.7696 2.7537
Mature fruiting body cap_gill 71.5421 7.335 4.2349
Mature fruiting body stipe 24.8784 3.6505 2.1076
Nitrogen sources (12h incubation) Expression profiling on diverse nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Complete medium - control 5.6769 0.997 0.5756
NH4NO3 9.6262 1.24 0.7159
Proline 7.0582 1.4815 0.8554
Tryptophan 7.6263 3.6673 2.1173
Isoleucin 9.4752 0.9168 0.5293
Arginine 7.2571 0.5296 0.3057
Metionine 5.4731 0.8778 0.5068
NaNO3 7.3157 0.6167 0.3561
Plant biomass (12h incubation) Expression profiling on diverse plant biomasses as carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 5.6769 0.997 0.5756
Citrus peel 4.1747 1.0929 0.631
Poplar leaves 6.6129 2.5449 1.4693
Typha leaves 5.9586 1.1797 0.6811
Overwintered Salix leaves 7.6554 0.8388 0.4843
Reed flowering 8.76 1.153 0.6657
Tigernut 7.9728 0.4727 0.2729
Energy cane 6.6052 1.1425 0.6596
Guar gum 12.3519 6.2327 3.5984
Apple peels 11.5573 2.7604 1.5937
Cellobiose 10.6219 1.2379 0.7147
Corn stalk 10.3893 1.984 1.1455
Horse manure 10.4469 1.4693 0.8483
Lignin 11.4476 1.7016 0.9824
Microcrystalline cellulose 7.0388 1.1864 0.6849
Oak leaves 8.9574 0.8809 0.5086
Pectin esterified 15.9361 3.7664 2.1745
Poplar sawdust 13.8182 3.0552 1.7639
Wheat bran 12.8452 1.3892 0.802
Chlamydomonas reinhardtii 6.832 1.732 1
Vertatryl alcohol 9.7556 1.9122 1.104
Furfural 6.577 2.1169 1.2222
Autoclaved mycelium 7.377 1.1741 0.6779
Simple and complex carbon and nitrogen sources Expression profiling on diverse complex carbon and nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 13.2542 1.1414 0.659
Ribose 8.7836 0.9506 0.5488
Mannose 10.6167 0.8503 0.6013
Fructose 11.571 3.408 1.9676
Arabinose 10.7991 1.3499 0.7794
Xylose 10.6566 1.0879 0.6281
Galacturonic acid 11.4928 1.46 0.8429
Rhamnogalacturonan 11.3012 1.5476 0.8935
Pectin esterified 11.3971 2.4457 1.412
Polygalacturonic acid 12.3472 2.6758 1.5448
Sodium acetate 8.1719 1.5712 0.9071
No nitrogen 9.5773 0.257 0.1484
BSA 10.9849 1.7863 1.0313
Glutamine 10.3804 0.6942 0.4008
No phosphate 10.1679 0.8941 0.5162
No carbon 11.1796 0.8173 0.5779
No sulphur 14.0713 1.3761 0.7945
Simple and complex carbon sources (12h incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 5.6769 0.997 0.5756
Amylose 16.7297 2.407 1.3897
Fucose 12.0019 2.5606 1.4783
Galactose 10.9681 1.121 0.6472
Lactose 13.8717 3.6577 2.1118
Maltose 18.2424 5.9204 3.4181
Mannitol 13.7975 3.3036 1.9073
Rhamnose 11.0811 2.3856 1.3773
Sorbitol 18.3347 3.8804 2.2403
Trehalose 12.5487 5.1457 2.9709
Glycerol 9.9884 3.0317 1.7503
Glucuronic acid 16.7315 1.9426 1.1216
Arabinan 13.6896 4.4775 2.5851
Galactan 6.6084 0.4488 0.2591
Galactomannan 7.0915 1.0904 0.6295
Glucan 7.9085 1.6245 0.9379
Xylan 10.6577 1.8154 1.0481
Xyloglucan 10.2882 2.4349 1.4058
Arabinogalactan 11.87 1.1183 0.6457
Pectin 10.5474 4.1892 2.4186
Rhamnogalacturonan 11.3427 1.6574 0.9569
Polygalacturonic acid 9.0447 2.0238 1.1685
Mannan 12.826 4.1976 2.4235
Amylopectin 11.1142 6.3673 3.6762
Inulin 7.9313 1.2672 0.7316
BSA 6.7384 0.8705 0.5026
Starvation induced by water agar transfer Expression profiling on starvation induced by transfer to water agar Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Control 2.584 0.4301 0.2483
2h WAT 1.3659 0.8364 0.4829
4h WAT 1.8989 0.0754 0.0435
8h WAT 2.4156 0.9919 0.5727
16h WAT 2.0466 1.0717 0.6188
24h WAT 1.5973 0.8364 0.4829
WAT hyphal knot -30h 1.1667 0.4446 0.2567
WAT hyphal knot -22h 1.4127 0.4003 0.2311
WAT hyphal knot -15h 2.7371 1.4372 0.8298
WAT hyphal knot -7.5h 4.5616 3.3009 1.9058
WAT hyphal knot 3.7882 1.6385 0.946
WAT hyphal knot +7.5h 3.5591 1.5036 0.8681
Straw time series Time series expression profiling on straw as a carbon source Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 11.5878 0.4761 0.2748
Straw 3h 9.4945 3.483 2.0109
Straw 6h 7.7466 1.1292 0.6519
Straw 12h 6.1377 0.1829 0.1056
Straw 24h 11.0928 4.1611 2.4024
Stress conditions 1 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 2.4124 0.736 0.4249
Frost (-20C, 30min) 2.9219 0.5833 0.3368
Heat shock (47C, 2h) 1.7131 0.3925 0.2266
High CO2 2.6819 0.2118 0.1223
Drought (4% agar, 12h) 3.8719 1.0639 0.6143
Oxidative (1mM H2O2, 3h) 3.3939 2.5123 1.4505
Acidic (pH4, 3h) 2.5672 1.1706 0.6758
Alkaline (pH9, 3h) 1.9595 0.6812 0.3933
Osmotic (sorbitol 2h) 1.8796 0.5701 0.3292
CongoRed (3h) 2.7615 1.2498 0.7215
Cobalt chloride control 3.683 0.3578 0.2066
Cobalt chloride 2mM 2.4861 1.2064 0.6965
Stress conditions 2 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 2.1408 3.204 1.8498
Cold stimulation 1.7122 0.6772 0.391
Scratched surface 1.5915 0.6396 0.3693
Ca2+, 200mM, 24h 2.3784 1.1357 0.6557
Cu2+, 2mM, 6h 1.3624 0.5661 0.3269
Voriconazole 8.8095 1.4261 0.8234
Trichoderma interaction, early 2.5531 0.8016 0.4628
Trichoderma interaction 60h 4.4662 0.2446 0.1412
Cobalt chloride 2mM repeat 4.0679 0.7704 0.4448
Hypoxia 1.8723 0.4851 0.2801
Hypoxia control 1.9462 1.5759 0.9099
Protoplastation control 3.2621 0.3044 0.2153
Protoplastation 3.5h 1.4642 1.4933 1.0559
Protoplastation 1.5h 1.2715 0.752 0.5318

General data

Systematic name -
Protein id CopciAB_128386.T0
Description

Annotation summary

0 100 200 300 325

Conserved domains

Analysis Signature accession Signature description InterPro Accession Start End
CDD cd00161 RICIN IPR000772 185 318
Pfam PF00652 Ricin-type beta-trefoil lectin domain IPR000772 197 317

SignalP

Prediction Start End Score
SP(Sec/SPI) 1 20 0.9528

Transmembrane domains

Domain n Start End Length
No records

InterPro

Accession Description
IPR000772 Ricin B, lectin domain
IPR035992 Ricin B-like lectins

GO

Go id Term Ontology
No records

KEGG

KEGG Orthology
No records

EggNOG

COG category Description
No records

CAZy

Class Family Subfamily
CBM CBM13

Transcription factor

Group
No records

Conservation of CopciAB_128386 across fungi.

Arrow shows the origin of gene family containing CopciAB_128386.

Protein

Sequence id CopciAB_128386.T0
Sequence >CopciAB_128386.T0
MMRFLLKCLPTFALLGGALTQNTFSARIRNNCGNTMRLFIDGVDTGPLLPGGDHFANLGLDTVIYNTLNGGNPDG
SATTRVFFWGERFYYYIVKDAGVSNVGVSISVPEHPKSVDGLCTTITCEPATCSSSEAYSEKQAFTENAIPVSSS
PALPLRSCPFGGARYVVEWCPNGTMPPGWEQNGQEIQLVVPGDRIWCVDVRAAAFTPGTPVQLYRCNGTPAQKWL
VPSPATTPGEVRLFGTDLCLDAGSNPHNGGLLTIQQCDGRPSQVWVYDDTNGRYTFSTIGGQCMDDTNGLKEDWV
QLQTWGCGPPENPNQKWLASVAIAP
Length 325

Coding

Sequence id CopciAB_128386.T0
Sequence >CopciAB_128386.T0
ATGATGAGGTTCCTTTTAAAATGCCTTCCTACGTTCGCGCTACTGGGGGGTGCCCTGACGCAGAATACCTTCAGC
GCGAGGATCAGGAACAACTGCGGGAATACGATGCGCTTGTTCATCGACGGTGTCGATACTGGCCCTCTCCTCCCA
GGCGGCGACCATTTCGCGAACTTGGGTCTCGACACTGTGATCTACAATACCCTCAACGGGGGGAACCCCGACGGG
AGTGCTACTACTAGGGTGTTCTTCTGGGGCGAGCGGTTCTATTACTACATCGTCAAAGACGCCGGAGTGAGCAAC
GTGGGTGTGAGTATCAGTGTACCTGAGCACCCCAAGTCTGTCGATGGGCTATGCACCACTATTACGTGCGAGCCA
GCCACCTGCAGCAGCTCTGAGGCGTACTCAGAAAAGCAAGCATTTACAGAGAACGCGATCCCTGTTTCATCCTCT
CCCGCTCTGCCTTTGCGATCATGCCCATTCGGAGGGGCGAGATACGTCGTTGAATGGTGCCCGAATGGAACTATG
CCGCCTGGTTGGGAACAGAATGGTCAAGAAATCCAGCTCGTTGTGCCAGGAGACCGGATTTGGTGTGTTGACGTT
CGAGCTGCCGCATTTACTCCTGGAACGCCGGTCCAGCTCTATCGATGCAACGGAACGCCAGCGCAGAAATGGCTA
GTCCCTTCTCCAGCCACTACTCCGGGTGAAGTGCGCCTTTTCGGGACAGACCTTTGTCTCGATGCTGGAAGTAAC
CCACACAATGGCGGTCTACTGACCATTCAGCAATGTGACGGACGCCCCTCCCAGGTCTGGGTCTACGACGATACA
AATGGCCGTTACACATTCTCAACCATTGGAGGGCAATGCATGGATGATACCAATGGGCTCAAGGAGGATTGGGTA
CAGTTACAGACCTGGGGATGCGGTCCTCCCGAGAATCCTAATCAGAAATGGTTGGCCAGCGTGGCGATCGCTCCT
TGA
Length 978

Transcript

Sequence id CopciAB_128386.T0
Sequence >CopciAB_128386.T0
ATTCCCTCTCTTATCCTGTTCCAGCGGTCTTCTACTCCATGATGAGGTTCCTTTTAAAATGCCTTCCTACGTTCG
CGCTACTGGGGGGTGCCCTGACGCAGAATACCTTCAGCGCGAGGATCAGGAACAACTGCGGGAATACGATGCGCT
TGTTCATCGACGGTGTCGATACTGGCCCTCTCCTCCCAGGCGGCGACCATTTCGCGAACTTGGGTCTCGACACTG
TGATCTACAATACCCTCAACGGGGGGAACCCCGACGGGAGTGCTACTACTAGGGTGTTCTTCTGGGGCGAGCGGT
TCTATTACTACATCGTCAAAGACGCCGGAGTGAGCAACGTGGGTGTGAGTATCAGTGTACCTGAGCACCCCAAGT
CTGTCGATGGGCTATGCACCACTATTACGTGCGAGCCAGCCACCTGCAGCAGCTCTGAGGCGTACTCAGAAAAGC
AAGCATTTACAGAGAACGCGATCCCTGTTTCATCCTCTCCCGCTCTGCCTTTGCGATCATGCCCATTCGGAGGGG
CGAGATACGTCGTTGAATGGTGCCCGAATGGAACTATGCCGCCTGGTTGGGAACAGAATGGTCAAGAAATCCAGC
TCGTTGTGCCAGGAGACCGGATTTGGTGTGTTGACGTTCGAGCTGCCGCATTTACTCCTGGAACGCCGGTCCAGC
TCTATCGATGCAACGGAACGCCAGCGCAGAAATGGCTAGTCCCTTCTCCAGCCACTACTCCGGGTGAAGTGCGCC
TTTTCGGGACAGACCTTTGTCTCGATGCTGGAAGTAACCCACACAATGGCGGTCTACTGACCATTCAGCAATGTG
ACGGACGCCCCTCCCAGGTCTGGGTCTACGACGATACAAATGGCCGTTACACATTCTCAACCATTGGAGGGCAAT
GCATGGATGATACCAATGGGCTCAAGGAGGATTGGGTACAGTTACAGACCTGGGGATGCGGTCCTCCCGAGAATC
CTAATCAGAAATGGTTGGCCAGCGTGGCGATCGCTCCTTGAGTTTGACCTCTCGCAGGCCTCTGACGACGGGGAT
TGAGTAACGTGGACCTCTTCGTCCACCTTTTATTGGACCTTTGACTAAACGGACTTCCATTATCGAACGATTTAC
GTAGTGTGAGCTCTATGCACCATGTACATCTTCTCACACTGAATGGCAAATCAAGTTGAGATGCA
Length 1190

Gene

Sequence id CopciAB_128386.T0
Sequence >CopciAB_128386.T0
ATTCCCTCTCTTATCCTGTTCCAGCGGTCTTCTACTCCATGATGAGGTTCCTTTTAAAATGCCTTCCTACGTTCG
CGCTACTGGGGGGTGCCCTGACGCAGAATACCTTCAGCGCGAGGATCAGGAACAACTGCGGGAATACGATGCGCT
TGTTCATCGACGGTGTCGATACTGGCCCTCTCCTCCCAGGCGGCGACCATTTCGCGAACTTGGGTCTCGACACTG
TGATCTACAATACCCTCAACGGGGGGAACCCCGACGGGAGTGCTACTACTAGGGTGTTCTTCTGGGGCGAGGTAA
GTGTGTCTATACCGTCGTACCAACATAGTTTCTGATTAGCCCTTTTACCACAAGCGGTTCTATTACTACATCGTC
AAAGACGCCGGAGTGAGCAACGTGGGTGTGAGTATCAGTGTACCTGAGCACCCCAAGTCTGTAAGTACCCTCGTC
GAGTTCCAATGTACGGATATTCCTAACTGGTTGAGAACAGGTCGATGGGCTATGCACCACTATTACGTGCGAGCC
AGCCACCTGCAGCAGCTCTGAGGCGTACTCAGAAAAGCAAGCATTTACAGAGAACGCGATCCCTGTTTCATCCTC
TCCCGCTCTGCCTTTGCGATCATGCCCATTCGGAGGGGCGAGATACGTCGTTGAGTAAGCCCTTTATTATTTGTG
GTGTTGGATAAAGACTGAGGCAATGCTAGATGGTGCCCGAATGGAACTATGCCGCCTGGTTGGGAACAGAATGGT
CAAGAAATCCAGCTCGTTGTGCCAGGAGACCGGATTTGGTGTGTTGACGTTCGAGCTGCCGCATTTACTCCTGGA
ACGCCGGTCCAGCTGTGAGTCACTCGCTCATTGTCGTCAGTAATTCCTCTGAACGCGTGCTAACGTGAGTACCTA
GCTATCGATGCAACGGAACGCCAGCGCAGAAATGGCTAGTCCCTTCTCCAGCCACTACTCCGGGTGAAGTGCGCC
TTTTCGGGACAGACCTTTGTCTCGATGCTGGAAGTAGTACGTCAAGCTCAGACCGAGCCCCGCCGATGGAAGCCT
AACGAAAAATACTTTAGACCCACACAATGGCGGTCTACTGACCATTCAGCAATGTGACGGACGCCCCTCCCAGGT
CTGGGTCTACGACGATACAAATGGCCGTTACACATTCTCAACCATTGGAGGTCAGTCCTTTATTTTTTCCTCGAG
CGATATGACAAGAATCTCACGAAAGTCACCCTACGGTGCCAGGGCAATGCATGGATGATACCAATGGGCTCAAGG
AGGATTGGGTACAGTTACAGACCTGGGGATGCGGTCCTCCCGAGAATCCTAATCAGAAATGGTTGGCCAGCGTGG
CGATCGCTCCTTGAGTTTGACCTCTCGCAGGCCTCTGACGACGGGGATTGAGTAACGTGGACCTCTTCGTCCACC
TTTTATTGGACCTTTGACTAAACGGACTTCCATTATCGAACGATTTACGTAGTGTGAGCTCTATGCACCATGTAC
ATCTTCTCACACTGAATGGCAAATCAAGTTGAGATGCA
Length 1538