CopciAB_356143
Coprinopsis cinerea A43mutB43mut pab1-1 #326

General data

Systematic name CopciAB_356143 Strain Coprinopsis cinerea Okayama 7
Standard name - Synonyms 356143
Uniprot id Functional description Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Location scaffold_7:1424843..1425974 Strand -
Gene length (nt) 1132 Transcript length (nt) 956
CDS length (nt) 738 Protein length (aa) 245

Reciprocal best hits in model fungi

Strain name Gene / Protein name

Orthologs in mushroom models

Strain name Gene / Protein name Pident E-value Bits
Schizophyllum commune H4-8 Schco3_2614728 46.5 3.657E-46 166
Hypsizygus marmoreus strain 51987-8 Hypma_RDB17967 51.8 1.851E-45 164
Agrocybe aegerita Agrae_CAA7261434 47.3 9.985E-42 153
Lentinula edodes NBRC 111202 Lenedo1_1043331 45.8 5.347E-39 145
Lentinula edodes W1-26 v1.0 Lentinedodes1_12666 45.8 5.306E-39 145
Grifola frondosa Grifr_OBZ69003 45.3 5.246E-38 142
Lentinula edodes B17 Lened_B_1_1_583 44.1 2.197E-37 140
Agaricus bisporus var bisporus (H97) Agabi_varbisH97_2_193750 39.7 6.887E-30 118
Ganoderma sp. 10597 SS1 v1.0 Gansp1_117121 40.5 8.543E-30 118
Agaricus bisporus var. burnettii JB137-S8 Agabi_varbur_1_113914 38.8 4.312E-24 101
Pleurotus ostreatus PC15 PleosPC15_2_169408 41.3 2.56E-18 84
Pleurotus ostreatus PC9 PleosPC9_1_107538 41.3 5.417E-18 83
Pleurotus eryngii ATCC 90797 Pleery1_546724 42.7 1.406E-17 82

Expression

Name Summary Attribution Assay type
Carbon metabolism Transcriptional changes along alternative morphogenetic paths of C. cinerea Xie et al. 2020 RNA-Seq
Sample Mean cpm SD cpm Se of mean
sclerotia 9.5273 3.3711 1.9463
oidia 23.6548 6.0402 3.4873
vegetative_mycelium 21.6455 3.3552 1.9371
primordia 18.3052 1.0369 0.5986
hyphal_knot 10.6469 2.0571 1.1877
young_fruiting_body 3.6462 1.2522 0.723
Complex carbon sources 1 (long incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control - glucose 10.2621 0.7093 0.4095
Wheat bran 33.8527 9.1011 5.2545
Horse manure 32.2706 8.0818 4.666
Oak leaves 14.9986 7.539 4.3526
Hay 32.3024 5.7811 3.3377
Corn stalk 24.4438 2.8249 1.6309
Pectine 18.8375 1.7368 1.0027
Microcrystalline cellulose 13.4199 2.3038 1.3301
Xylose 10.1862 2.1227 1.2256
Cellobiose 10.0818 1.0908 0.6298
Lignin 12.262 1.5073 0.8702
Apple peels 19.1997 1.0254 0.592
Coprinopsis challenged with bacteria Transcriptional response to Bacillus subtilis and Escherichia coli. Kombrink et al. 2018 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control 22.6249 1.788 1.0323
Bsubtilis 16.4595 2.3302 1.3453
Ecoli 9.3779 1.7298 0.9987
Early development 1 Time series expression profiling of basidiospore and oidium germination Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
BS 0h 5.0739 3.4906 2.0153
BS 4h 11.9577 1.2279 0.7089
BS 8h 21.7374 1.1985 0.6919
BS 12h 29.0465 2.3685 1.3675
Oidia 0 h 3.343 0.3936 0.2272
Oidia 18 h 22.9002 4.183 2.415
Sclerotia 10.5164 4.6482 2.6836
Early development 2 Time series expression profiling of mycelial growth, light induction and fruiting body initiation. Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
DM 12h 13.3363 0.5935 0.3427
DM 36h 14.4401 2.9715 1.7156
DM 60h 15.5473 2.1637 1.2492
DM 84h 12.255 1.4485 0.8363
DM 108h 12.7221 0.9381 0.5416
DM 132h 12.1441 0.93 0.5369
DM 156hAE 9.8571 2.2816 1.3173
ELI1hAE 15.6714 2.529 1.4601
ELI2hAE 15.4482 3.6 2.0785
LI2hAE 15.5375 2.3207 1.3398
LI6hAE 12.6098 1.6141 0.9319
LI12hAE 17.0519 2.859 1.6506
LI18hAE 15.1262 2.4323 1.4043
LI 24hAE 14.3708 1.1559 0.6674
DM 156hAM 13.395 2.4306 1.4033
ELI1hAM 18.8949 2.5542 1.4747
ELI2hAM 18.2007 2.4847 1.4345
LI2hAM 17.6146 2.126 1.2275
LI6hAM 17.6173 2.5927 1.4969
LI12hAM 13.8164 3.3767 1.9495
LI18hAM 10.0927 2.123 1.2257
LI 24hAM 12.055 2.8477 1.6441
LI 24hHK 15.2784 5.4896 3.1694
L/D 6h 11.2881 2.5656 1.4813
L/D 12h 10.6024 3.9596 2.2861
L/D 18h 14.4745 2.5261 1.4584
L/D 24h 16.7455 2.5933 1.4973
Fruiting body development RNA-Seq analysis of fruiting body development Krizsan et al. 2019 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Vegetative mycelium 15.9527 3.0389 1.7545
Hyphal knots 17.8489 4.1965 2.4229
Primordium 1 26.6464 9.6852 5.5918
Primordium 2 21.0768 0.841 0.4856
Young Fruiting body cap 4.8156 3.734 2.1558
Younf fruiting body gill 16.3243 8.408 4.8544
Young fruiting body stipe 16.6316 6.2302 3.597
Mature fruiting body cap_gill 1.3377 1.055 0.6091
Mature fruiting body stipe 2.4582 0.4502 0.2599
Nitrogen sources (12h incubation) Expression profiling on diverse nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Complete medium - control 6.8118 2.683 1.549
NH4NO3 12.9215 2.3285 1.3444
Proline 12.2778 1.3416 0.7746
Tryptophan 14.4096 2.8982 1.6733
Isoleucin 14.0053 3.2718 1.889
Arginine 10.4168 1.5596 0.9005
Metionine 9.6633 0.3429 0.198
NaNO3 11.1053 1.1083 0.6399
Plant biomass (12h incubation) Expression profiling on diverse plant biomasses as carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 6.8118 2.683 1.549
Citrus peel 8.0204 1.1412 0.6589
Poplar leaves 13.7357 1.2042 0.6953
Typha leaves 12.8778 0.1439 0.0831
Overwintered Salix leaves 12.6474 1.7094 0.9869
Reed flowering 8.0386 3.4367 1.9842
Tigernut 12.4766 2.0504 1.1838
Energy cane 8.1908 0.6507 0.3757
Guar gum 10.3113 2.3545 1.3594
Apple peels 18.3109 2.9032 1.6761
Cellobiose 17.1196 0.5838 0.337
Corn stalk 13.9394 1.9857 1.1464
Horse manure 13.1247 2.95 1.7032
Lignin 11.7993 5.202 3.0034
Microcrystalline cellulose 15.0138 3.0195 1.7433
Oak leaves 14.4267 3.4201 1.9746
Pectin esterified 21.4042 3.8537 2.2249
Poplar sawdust 14.9478 4.9248 2.8434
Wheat bran 18.5342 1.8863 1.0891
Chlamydomonas reinhardtii 11.2457 0.7151 0.4128
Vertatryl alcohol 4.5242 0.6737 0.3889
Furfural 10.107 1.5906 0.9183
Autoclaved mycelium 12.468 0.6315 0.3646
Simple and complex carbon and nitrogen sources Expression profiling on diverse complex carbon and nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 42.4006 5.6976 3.2895
Ribose 28.1509 3.0452 1.7581
Mannose 37.7196 5.7441 4.0617
Fructose 31.6693 2.8945 1.6711
Arabinose 24.7435 1.6026 0.9253
Xylose 32.9342 0.9043 0.5221
Galacturonic acid 29.3459 3.8329 2.2129
Rhamnogalacturonan 29.1909 1.5996 0.9235
Pectin esterified 32.9269 0.9917 0.5726
Polygalacturonic acid 26.8335 1.2969 0.7487
Sodium acetate 28.8009 0.2144 0.1238
No nitrogen 33.6324 4.4585 2.5741
BSA 26.5578 2.3711 1.3689
Glutamine 28.5744 4.072 2.351
No phosphate 41.0786 5.5215 3.1878
No carbon 26.3539 4.4138 3.121
No sulphur 38.4782 5.2949 3.057
Simple and complex carbon sources (12h incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 6.8118 2.683 1.549
Amylose 17.0127 1.4159 0.8175
Fucose 11.4102 0.5469 0.3157
Galactose 13.4072 3.4469 1.99
Lactose 11.0313 1.0844 0.6261
Maltose 9.2149 1.64 0.9468
Mannitol 9.7042 0.9355 0.5401
Rhamnose 10.2274 1.0788 0.6228
Sorbitol 12.0648 1.8335 1.0585
Trehalose 10.4706 1.3486 0.7786
Glycerol 9.5871 0.7939 0.4583
Glucuronic acid 12.4912 1.5892 0.9175
Arabinan 14.1438 1.7978 1.0379
Galactan 11.2001 1.6663 0.962
Galactomannan 11.3645 0.895 0.5167
Glucan 9.4521 0.5842 0.3373
Xylan 18.0028 4.1482 2.395
Xyloglucan 15.7364 2.0521 1.1848
Arabinogalactan 16.3403 2.459 1.4197
Pectin 5.7341 0.3358 0.1939
Rhamnogalacturonan 5.5267 1.1629 0.6714
Polygalacturonic acid 9.7496 2.3219 1.3405
Mannan 10.0638 1.4317 0.8266
Amylopectin 9.6443 0.4032 0.2328
Inulin 10.8034 0.9937 0.5737
BSA 7.9645 2.6378 1.5229
Starvation induced by water agar transfer Expression profiling on starvation induced by transfer to water agar Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Control 15.5473 2.1637 1.2492
2h WAT 16.5675 2.9338 1.6938
4h WAT 14.8984 2.3677 1.367
8h WAT 12.5913 0.454 0.2621
16h WAT 10.3706 3.0631 1.7685
24h WAT 11.0584 0.6252 0.361
WAT hyphal knot -30h 15.1199 1.8196 1.0506
WAT hyphal knot -22h 20.7356 2.0635 1.1914
WAT hyphal knot -15h 16.977 0.7263 0.4193
WAT hyphal knot -7.5h 17.0974 5.2119 3.0091
WAT hyphal knot 17.3279 3.3677 1.9444
WAT hyphal knot +7.5h 17.9603 3.8907 2.2463
Straw time series Time series expression profiling on straw as a carbon source Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 14.9067 3.9446 2.2774
Straw 3h 11.075 2.1304 1.23
Straw 6h 14.208 4.3423 2.507
Straw 12h 10.9 1.748 1.0092
Straw 24h 12.2772 1.9171 1.1068
Stress conditions 1 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 15.666 1.4747 0.8514
Frost (-20C, 30min) 19.4845 0.8651 0.4995
Heat shock (47C, 2h) 1.0798 0.6554 0.3784
High CO2 14.0813 6.1362 3.5427
Drought (4% agar, 12h) 20.3237 5.5677 3.2145
Oxidative (1mM H2O2, 3h) 11.9361 1.6725 0.9656
Acidic (pH4, 3h) 14.3171 3.0141 1.7402
Alkaline (pH9, 3h) 17.3778 4.0719 2.3509
Osmotic (sorbitol 2h) 21.7488 3.3443 1.9308
CongoRed (3h) 17.5847 4.0263 2.3246
Cobalt chloride control 14.4716 1.202 0.694
Cobalt chloride 2mM 8.8459 3.2777 1.8924
Stress conditions 2 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 19.023 6.4428 3.7198
Cold stimulation 19.1843 1.5756 0.9097
Scratched surface 26.3192 0.4356 0.2515
Ca2+, 200mM, 24h 26.6464 4.3822 2.5301
Cu2+, 2mM, 6h 17.018 6.1067 3.5257
Voriconazole 12.5825 3.2509 1.8769
Trichoderma interaction, early 18.0228 0.5463 0.3154
Trichoderma interaction 60h 14.7465 10.1939 5.8854
Cobalt chloride 2mM repeat 12.1465 5.2423 3.0266
Hypoxia 13.4314 4.1698 2.4074
Hypoxia control 12.3154 4.0163 2.3188
Protoplastation control 14.3054 2.2503 1.5912
Protoplastation 3.5h 11.7369 5.6321 3.9825
Protoplastation 1.5h 11.1216 6.9405 4.9077

General data

Systematic name -
Protein id CopciAB_356143.T0
Description Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Annotation summary

0 100 200 245

Conserved domains

Analysis Signature accession Signature description InterPro Accession Start End
Pfam PF00808 Histone-like transcription factor (CBF/NF-Y) and archaeal histone IPR003958 120 180

SignalP

Prediction Start End Score
No records

Transmembrane domains

Domain n Start End Length
No records

InterPro

Accession Description
IPR009072 Histone-fold
IPR003958 Transcription factor CBF/NF-Y/archaeal histone domain

GO

Go id Term Ontology
GO:0046982 protein heterodimerization activity MF

KEGG

KEGG Orthology
K03004
K03506

EggNOG

COG category Description
K Histone-like transcription factor (CBF/NF-Y) and archaeal histone

CAZy

Class Family Subfamily
No records

Transcription factor

Group
histone fold

Conservation of CopciAB_356143 across fungi.

Arrow shows the origin of gene family containing CopciAB_356143.

Protein

Sequence id CopciAB_356143.T0
Sequence >CopciAB_356143.T0
MSSSPISSPINKNHASMEEDKPMNDTLVDEEGDVVQFEDEDESQFPEEDEPQFPDEDEAQFPEEEEDAMDVDEPP
PPEVEAGKGGKTKAAKTTATTSSTSKPKKKKEAQTLEREPGKSLLPLARVQKIIKADKDIPIVAKDATFLISLAT
EEFIRRITEAGARVANRENRTTVQGRDIASVAKRVDEFLFLDDILPFVSAEPKRQNKVKDMISAVAPLKGAPTAL
EQFVGKKGQQQESNNHEEEG
Length 245

Coding

Sequence id CopciAB_356143.T0
Sequence >CopciAB_356143.T0
ATGTCCTCTTCACCGATATCATCACCCATTAACAAGAATCACGCGTCAATGGAAGAGGACAAGCCCATGAACGAC
ACACTGGTGGACGAGGAGGGGGATGTAGTCCAGTTTGAAGACGAAGATGAATCACAGTTTCCGGAAGAGGACGAA
CCACAGTTTCCAGATGAAGATGAGGCGCAGTTTCCGGAGGAGGAGGAAGATGCGATGGATGTGGACGAACCGCCG
CCTCCAGAGGTAGAGGCAGGGAAGGGCGGAAAGACCAAGGCGGCCAAGACGACGGCGACAACGAGTTCAACATCC
AAACCGAAGAAGAAGAAGGAAGCGCAGACGCTTGAGAGAGAACCTGGAAAATCGTTACTCCCTCTTGCGCGTGTT
CAGAAAATCATTAAAGCGGATAAAGATATACCCATAGTAGCTAAAGACGCTACGTTCCTCATTTCATTGGCAACT
GAGGAGTTCATTAGACGGATAACGGAGGCTGGGGCGAGGGTCGCCAATCGAGAGAATAGGACGACTGTGCAAGGA
CGGGATATAGCGAGCGTAGCGAAACGCGTGGATGAATTTCTTTTCCTTGACGATATTTTGCCTTTCGTTTCGGCA
GAACCTAAACGACAAAACAAAGTAAAGGATATGATTTCAGCTGTGGCGCCGTTGAAGGGTGCTCCAACTGCTTTG
GAACAGTTTGTTGGGAAGAAGGGGCAACAACAGGAAAGCAATAATCATGAGGAGGAAGGATAG
Length 738

Transcript

Sequence id CopciAB_356143.T0
Sequence >CopciAB_356143.T0
GGACGCGTCTCAATTCACGACCACCACGCCGCCAGGCCTTTCCTTCACATTCCTAACACACCTTGTGTATCAATC
TACAACGAATCATGTCCTCTTCACCGATATCATCACCCATTAACAAGAATCACGCGTCAATGGAAGAGGACAAGC
CCATGAACGACACACTGGTGGACGAGGAGGGGGATGTAGTCCAGTTTGAAGACGAAGATGAATCACAGTTTCCGG
AAGAGGACGAACCACAGTTTCCAGATGAAGATGAGGCGCAGTTTCCGGAGGAGGAGGAAGATGCGATGGATGTGG
ACGAACCGCCGCCTCCAGAGGTAGAGGCAGGGAAGGGCGGAAAGACCAAGGCGGCCAAGACGACGGCGACAACGA
GTTCAACATCCAAACCGAAGAAGAAGAAGGAAGCGCAGACGCTTGAGAGAGAACCTGGAAAATCGTTACTCCCTC
TTGCGCGTGTTCAGAAAATCATTAAAGCGGATAAAGATATACCCATAGTAGCTAAAGACGCTACGTTCCTCATTT
CATTGGCAACTGAGGAGTTCATTAGACGGATAACGGAGGCTGGGGCGAGGGTCGCCAATCGAGAGAATAGGACGA
CTGTGCAAGGACGGGATATAGCGAGCGTAGCGAAACGCGTGGATGAATTTCTTTTCCTTGACGATATTTTGCCTT
TCGTTTCGGCAGAACCTAAACGACAAAACAAAGTAAAGGATATGATTTCAGCTGTGGCGCCGTTGAAGGGTGCTC
CAACTGCTTTGGAACAGTTTGTTGGGAAGAAGGGGCAACAACAGGAAAGCAATAATCATGAGGAGGAAGGATAGC
GGACCATATCGCGAGCCGCTGGAGTTCATGCAACGGCAGAGAAATTGCTATATCTAGTGTGTCGTTTCCTTTTGC
ATTGAACAGTCCGAGTTGTACAGGGTCACAGAGTACATTATATATTTATGTGGATG
Length 956

Gene

Sequence id CopciAB_356143.T0
Sequence >CopciAB_356143.T0
GGACGCGTCTCAATTCACGACCACCACGCCGCCAGGCCTTTCCTTCACATTCCTAACACACCTTGTGTATCAATC
TACAACGAATCATGTCCTCTTCACCGATATCATCACCCATTAACAAGAATCACGCGTCAATGGAAGAGGACAAGC
CCATGAACGACACACTGGTGGACGAGGAGGGGGATGTAGTCCAGTTTGAAGACGAAGATGAATCACAGTTTCCGG
AAGAGGACGAACCACAGTTTCCAGATGAAGATGAGGCGCAGTTTCCGGAGGAGGAGGAAGATGCGATGGATGTGG
ACGAACCGCCGCCTCCAGAGGTAGAGGCAGGGAAGGGCGGAAAGACCAAGGCGGCCAAGACGACGGCGACAACGA
GTTCAACATCCAAACCGAAGAAGAAGAAGGAAGCGCAGACGCTTGAGAGAGAACCTGGAAAATCGTTACTCCCTC
TTGCGCGTGTTCAGAAAATCATTAAAGCGGATAAAGTGCGTTTTGGTACCGTCAGGTTCGGCGACGAGAGCTAAT
GAGATTGTTTAGGATATACCCATAGTAGCTAAAGACGCTACGTTCCTCATTTCATTGGCAACTGAGGAGTTCATT
AGACGGATAACGGAGGCTGGGGCGAGGGTCGCCAATCGAGAGAATAGGACGACTGTGCAAGGACGGGATATAGGT
ACATTATCCTTCTCCTCCGGGTGGTGTCAGTGCTGATTATAGTATAGCGAGCGTAGCGAAACGCGTGGATGAATT
TCTTTTCCTTGACGGTAAGCACTTGCAGTTGCGGTTAAGAATGAACACGGTGTCTAACGCGTTCATTGACTTCGT
CTCGTTGCATATAGATATTTTGCCTTTCGTTTCGGCAGAACCTAAACGACAAAACAAAGTAAAGGATATGATTTC
AGCTGTGGCGCCGTTGAAGGGTGCTCCAACTGCTTTGGAACAGTTTGTTGGGAAGAAGGGGCAACAACAGGAAAG
CAATAATCATGAGGAGGAAGGATAGCGGACCATATCGCGAGCCGCTGGAGTTCATGCAACGGCAGAGAAATTGCT
ATATCTAGTGTGTCGTTTCCTTTTGCATTGAACAGTCCGAGTTGTACAGGGTCACAGAGTACATTATATATTTAT
GTGGATG
Length 1132