CopciAB_364173
Coprinopsis cinerea A43mutB43mut pab1-1 #326

General data

Systematic name CopciAB_364173 Strain Coprinopsis cinerea Okayama 7
Standard name IRE1 Synonyms 364173
Uniprot id Functional description domain in protein kinases, N-glycanases and other nuclear proteins
Location scaffold_9:1316832..1320960 Strand -
Gene length (nt) 4129 Transcript length (nt) 3843
CDS length (nt) 3477 Protein length (aa) 1158

Reciprocal best hits in model fungi

Strain name Gene / Protein name
Aspergillus nidulans AN0235_ireA

Orthologs in mushroom models

Strain name Gene / Protein name Pident E-value Bits
Hypsizygus marmoreus strain 51987-8 Hypma_RDB19766 57.7 0 1284
Agrocybe aegerita Agrae_CAA7269916 57 0 1238
Schizophyllum commune H4-8 Schco3_2629108 55.7 0 1234
Flammulina velutipes Flave_chr11AA01750 56.4 0 1174
Agaricus bisporus var bisporus (H97) Agabi_varbisH97_2_37330 53.9 0 1158
Ganoderma sp. 10597 SS1 v1.0 Gansp1_120939 51.8 0 1114
Pleurotus ostreatus PC15 PleosPC15_2_1060565 52.9 0 1105
Pleurotus eryngii ATCC 90797 Pleery1_1471524 49.5 0 1095
Lentinula edodes NBRC 111202 Lenedo1_739048 48.9 0 1033
Lentinula edodes W1-26 v1.0 Lentinedodes1_10463 48.9 0 1033
Grifola frondosa Grifr_OBZ76674 49.2 2.094E-304 1004
Auricularia subglabra Aurde3_1_1272235 48.1 4.079E-295 934
Agaricus bisporus var. burnettii JB137-S8 Agabi_varbur_1_60620 74 7.946E-234 754
Lentinula edodes B17 Lened_B_1_1_11946 51.3 1.244E-225 730
Pleurotus ostreatus PC9 PleosPC9_1_82636 79.6 1.387E-224 727

Expression

Name Summary Attribution Assay type
Carbon metabolism Transcriptional changes along alternative morphogenetic paths of C. cinerea Xie et al. 2020 RNA-Seq
Sample Mean cpm SD cpm Se of mean
sclerotia 196.8568 1.6265 0.939
oidia 139.3836 3.6023 2.0798
vegetative_mycelium 147.4502 15.6662 9.0449
primordia 119.7958 3.309 1.9105
hyphal_knot 185.8875 8.356 4.8243
young_fruiting_body 353.1817 35.0122 20.2143
Complex carbon sources 1 (long incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control - glucose 181.5202 9.8576 5.6913
Wheat bran 82.2679 28.6022 16.5135
Horse manure 130.1763 50.7986 29.3286
Oak leaves 193.9949 31.539 18.209
Hay 122.158 26.3488 15.2125
Corn stalk 166.802 10.814 6.2434
Pectine 170.9175 7.016 4.0507
Microcrystalline cellulose 164.4828 23.9065 13.8025
Xylose 173.2675 25.4068 14.6686
Cellobiose 164.6268 25.8495 14.9242
Lignin 151.7169 36.7946 21.2434
Apple peels 201.2443 29.2411 16.8824
Coprinopsis challenged with bacteria Transcriptional response to Bacillus subtilis and Escherichia coli. Kombrink et al. 2018 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control 126.1147 2.854 1.6477
Bsubtilis 129.9756 5.355 3.0917
Ecoli 164.8363 8.3531 4.8227
Early development 1 Time series expression profiling of basidiospore and oidium germination Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
BS 0h 45.0233 7.0207 4.0534
BS 4h 44.2218 2.6477 1.5286
BS 8h 45.089 2.1226 1.2255
BS 12h 42.8456 9.7732 5.6426
Oidia 0 h 39.2108 14.0416 8.1069
Oidia 18 h 50.8507 5.8701 3.3891
Sclerotia 82.8296 9.2031 5.3134
Early development 2 Time series expression profiling of mycelial growth, light induction and fruiting body initiation. Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
DM 12h 37.9642 6.7231 3.8816
DM 36h 48.1564 0.7294 0.4211
DM 60h 54.4085 7.4063 4.276
DM 84h 38.2697 2.9649 1.7118
DM 108h 45.0305 1.691 0.9763
DM 132h 51.4704 5.0618 2.9225
DM 156hAE 56.0566 2.5326 1.4622
ELI1hAE 50.174 2.1197 1.2238
ELI2hAE 59.0341 3.1945 1.8444
LI2hAE 54.4786 6.144 3.5472
LI6hAE 53.2887 4.1224 2.3801
LI12hAE 55.7148 9.1283 5.2702
LI18hAE 77.1887 9.2966 5.3674
LI 24hAE 57.0342 9.8437 5.6833
DM 156hAM 46.8563 10.7059 6.1811
ELI1hAM 53.0333 5.8562 3.3811
ELI2hAM 50.8055 8.2671 4.773
LI2hAM 47.8738 1.3816 0.7977
LI6hAM 44.976 4.8979 2.8278
LI12hAM 50.7588 5.8486 3.3767
LI18hAM 57.0336 4.8406 2.7947
LI 24hAM 72.3907 3.4901 2.015
LI 24hHK 45.6028 5.2201 3.0138
L/D 6h 61.3823 0.9455 0.5459
L/D 12h 62.828 1.8177 1.0494
L/D 18h 65.5339 12.9586 7.4817
L/D 24h 59.4394 8.6149 4.9738
Fruiting body development RNA-Seq analysis of fruiting body development Krizsan et al. 2019 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Vegetative mycelium 103.656 13.6899 7.9039
Hyphal knots 126.6257 8.449 4.878
Primordium 1 103.3646 20.1859 11.6544
Primordium 2 85.8444 12.6212 7.2868
Young Fruiting body cap 181.794 45.4086 26.2167
Younf fruiting body gill 102.3877 37.5347 21.6707
Young fruiting body stipe 68.701 8.5414 4.9314
Mature fruiting body cap_gill 153.7106 59.651 34.4395
Mature fruiting body stipe 128.9813 15.4207 8.9031
Nitrogen sources (12h incubation) Expression profiling on diverse nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Complete medium - control 106.9361 11.8034 6.8147
NH4NO3 107.7974 6.8038 3.9282
Proline 122.9546 8.5099 4.9132
Tryptophan 116.9271 24.1999 13.9718
Isoleucin 131.0922 9.0537 5.2272
Arginine 137.7492 8.9921 5.1916
Metionine 128.4747 11.3743 6.5669
NaNO3 108.1225 13.4197 7.7479
Plant biomass (12h incubation) Expression profiling on diverse plant biomasses as carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 106.9361 11.8034 6.8147
Citrus peel 83.3861 3.7918 2.1892
Poplar leaves 115.5554 19.333 11.1619
Typha leaves 99.3783 12.3444 7.1271
Overwintered Salix leaves 95.7875 13.5955 7.8494
Reed flowering 97.2272 9.3128 5.3768
Tigernut 77.2774 2.0731 1.1969
Energy cane 96.5222 3.6803 2.1248
Guar gum 92.3702 25.4614 14.7001
Apple peels 66.5081 9.0051 5.1991
Cellobiose 110.1691 1.0422 0.6017
Corn stalk 73.5419 6.5922 3.806
Horse manure 78.7257 3.6599 2.113
Lignin 86.6688 48.114 27.7786
Microcrystalline cellulose 98.4954 8.3072 4.7962
Oak leaves 73.154 20.2483 11.6904
Pectin esterified 50.2216 9.5848 5.5338
Poplar sawdust 84.625 20.568 11.8749
Wheat bran 50.4827 12.3317 7.1197
Chlamydomonas reinhardtii 89.7981 1.1261 0.6502
Vertatryl alcohol 155.4371 9.1454 5.2801
Furfural 97.7546 9.9749 5.759
Autoclaved mycelium 109.9512 8.799 5.0801
Simple and complex carbon and nitrogen sources Expression profiling on diverse complex carbon and nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 131.3499 5.4973 3.1738
Ribose 131.2863 10.1386 5.8535
Mannose 134.2025 1.394 0.9857
Fructose 149.5152 17.3725 10.03
Arabinose 151.0146 8.2289 4.7509
Xylose 139.4779 9.8195 5.6693
Galacturonic acid 135.9295 14.5481 8.3994
Rhamnogalacturonan 142.975 4.8328 2.7902
Pectin esterified 140.8054 7.9237 4.5748
Polygalacturonic acid 145.0829 12.2055 7.0469
Sodium acetate 128.8925 9.4783 5.4723
No nitrogen 141.5217 5.4801 3.1639
BSA 157.7409 7.9333 4.5803
Glutamine 152.4688 7.1554 4.1312
No phosphate 136.7351 9.7831 5.6482
No carbon 136.4743 11.2968 7.988
No sulphur 158.637 15.4723 8.9329
Simple and complex carbon sources (12h incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 106.9361 11.8034 6.8147
Amylose 85.751 5.3309 3.0778
Fucose 93.9544 10.5375 6.0838
Galactose 93.8273 2.0621 1.1906
Lactose 135.0811 7.7333 4.4648
Maltose 118.7988 11.9588 6.9044
Mannitol 144.6553 14.276 8.2422
Rhamnose 121.3105 9.0446 5.2219
Sorbitol 103.9606 7.8892 4.5548
Trehalose 104.7361 15.5755 8.9925
Glycerol 110.9775 24.5933 14.199
Glucuronic acid 102.6596 9.9699 5.7561
Arabinan 88.1059 11.2286 6.4829
Galactan 84.274 3.4142 1.9712
Galactomannan 78.393 1.8046 1.0419
Glucan 102.974 8.3034 4.794
Xylan 79.239 8.2297 4.7514
Xyloglucan 87.1837 5.5851 3.2246
Arabinogalactan 97.102 7.9239 4.5748
Pectin 88.6174 34.0249 19.6443
Rhamnogalacturonan 99.6472 17.4627 10.0821
Polygalacturonic acid 110.4985 5.1521 2.9745
Mannan 95.0274 2.2684 1.3096
Amylopectin 86.1427 13.649 7.8803
Inulin 112.1988 11.8564 6.8453
BSA 106.0418 6.1691 3.5617
Starvation induced by water agar transfer Expression profiling on starvation induced by transfer to water agar Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Control 54.4085 7.4063 4.276
2h WAT 44.0437 5.7218 3.3035
4h WAT 49.9126 5.1772 2.989
8h WAT 51.5047 2.2049 1.273
16h WAT 60.9212 4.3401 2.5058
24h WAT 52.196 2.0836 1.203
WAT hyphal knot -30h 51.3339 7.1708 4.14
WAT hyphal knot -22h 39.1606 3.8775 2.2387
WAT hyphal knot -15h 43.1816 4.0826 2.3571
WAT hyphal knot -7.5h 53.8377 10.4169 6.0142
WAT hyphal knot 57.1602 4.5885 2.6491
WAT hyphal knot +7.5h 50.8376 1.0537 0.6084
Straw time series Time series expression profiling on straw as a carbon source Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 89.6118 27.0739 15.6311
Straw 3h 80.6501 18.009 10.3975
Straw 6h 61.4148 8.4959 4.9051
Straw 12h 80.1633 6.3245 3.6515
Straw 24h 63.7349 8.489 4.9011
Stress conditions 1 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 44.5458 6.4534 3.7259
Frost (-20C, 30min) 48.0858 1.5472 0.8933
Heat shock (47C, 2h) 210.3579 4.3917 2.5356
High CO2 47.8164 3.777 2.1806
Drought (4% agar, 12h) 44.4485 8.1863 4.7263
Oxidative (1mM H2O2, 3h) 65.513 4.7368 2.7348
Acidic (pH4, 3h) 49.7385 4.8766 2.8155
Alkaline (pH9, 3h) 40.6562 2.1868 1.2625
Osmotic (sorbitol 2h) 52.8331 4.5798 2.6441
CongoRed (3h) 50.7225 7.8328 4.5223
Cobalt chloride control 62.2254 3.2055 1.8507
Cobalt chloride 2mM 61.3493 7.0773 4.0861
Stress conditions 2 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 38.4233 8.8555 5.1127
Cold stimulation 44.3048 10.0435 5.7986
Scratched surface 45.4548 3.1706 1.8305
Ca2+, 200mM, 24h 71.2543 23.8267 13.7564
Cu2+, 2mM, 6h 51.8278 5.2517 3.0321
Voriconazole 51.142 5.1134 2.9522
Trichoderma interaction, early 41.4008 4.2021 2.4261
Trichoderma interaction 60h 58.9971 21.5284 12.4295
Cobalt chloride 2mM repeat 43.2347 3.5733 2.0631
Hypoxia 56.9555 4.2924 2.4782
Hypoxia control 44.9939 10.0139 5.7815
Protoplastation control 57.0292 1.967 1.3909
Protoplastation 3.5h 63.0445 9.3229 6.5923
Protoplastation 1.5h 55.0773 19.2355 13.6016

General data

Systematic name IRE1
Protein id CopciAB_364173.T0
Description domain in protein kinases, N-glycanases and other nuclear proteins

Annotation summary

0 300 600 900 1158

Conserved domains

Analysis Signature accession Signature description InterPro Accession Start End
CDD cd09769 Luminal_IRE1 - 63 384
CDD cd10422 RNase_Ire1 - 1024 1153
Pfam PF00069 Protein kinase domain IPR000719 714 906
Pfam PF06479 Ribonuclease 2-5A IPR010513 1026 1153

SignalP

Prediction Start End Score
SP(Sec/SPI) 1 20 0.9802

Transmembrane domains

Domain n Start End Length
No records

InterPro

Accession Description
IPR008271 Serine/threonine-protein kinase, active site
IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat
IPR045133 Serine/threonine-protein kinase/endoribonuclease IRE1/2-like
IPR000719 Protein kinase domain
IPR010513 KEN domain
IPR015943 WD40/YVTN repeat-like-containing domain superfamily
IPR011009 Protein kinase-like domain superfamily
IPR038357 KEN domain superfamily
IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily

GO

Go id Term Ontology
GO:0004672 protein kinase activity MF
GO:0006468 protein phosphorylation BP
GO:0004521 endoribonuclease activity MF
GO:0004674 protein serine/threonine kinase activity MF
GO:0030968 endoplasmic reticulum unfolded protein response BP
GO:0005524 ATP binding MF
GO:0004540 ribonuclease activity MF
GO:0006397 mRNA processing BP
GO:0005515 protein binding MF

KEGG

KEGG Orthology
K08852

EggNOG

COG category Description
T domain in protein kinases, N-glycanases and other nuclear proteins

CAZy

Class Family Subfamily
No records

Transcription factor

Group
No records

Conservation of CopciAB_364173 across fungi.

Arrow shows the origin of gene family containing CopciAB_364173.

Protein

Sequence id CopciAB_364173.T0
Sequence >CopciAB_364173.T0
MAFVFFLQFLLLIVGAVCWAEIVNVRSTIPAAETAALIQRTRPAPTYATGGILEPTKDLELLDIVLVASIDGKFH
ALSRSTGKILWSMPAFARAEGSSTLSSLAPLVRTTHPENDPDDFDDDTTPETYIIEPQSGHIYVVNSEDDSLQRF
PFSMAELVDMSPFTSPGDDEKRVFIGRKETSLLLLELETGRIKATLNSECPPYDDRRIDLDELEEPESRGSSTTE
VFIGRTDYYISIYPHRSKGYGTRAPVQNLSFSVYGPNNEDNLLQANYRRTSDDAYIQGFPNGDVYSFKTKSEGGR
VQTQPLWVQKFHAPTVAVFDVLRGSTPLQPHPHAFVLLQPRPRAEDVIPGLDRSLLRGAKSAYVGMVEETGSLYA
MSPSHYPLVAFGDAEEGRKGRLIEGSGGSAQSIHDIIRNQKEADRRIRCEDNPRDRECLLGMHPLDETDGHESRM
RRLLEGPSSISPIPTFRPGQNQWIDHGIEVVPNIEAPPNNSQQPATPVPPEEVRKTGWEYLGVTLGLGLVSLWFL
FKKFGQREGFKVPKFIPVPNGDAQIARPLAPIPDTATEPAPAPEPATVQPLQIIPEQPAPPAPLPLPLPPLEDPT
TDALAGTGEEGDDTDREGDPEPETVATPGRKKPRRGKRGKKKKKDATPIPGEEGVEGKAPNGPDGPAANGTPNIN
PPDNNPDATIAPAAPQSPSLVVSSPIIPAAAGPSLVVSDTILGFGSHGTVVFQGSLQGRAVAVKRLLKDFVTLAS
REVSILQESDDHPNVIRYYYQEAHANFLYIALELCPASLADIIETPDREAFRDIAISFDPKRALKQITSGLKHLH
ALKLVHRDIKPQNILITTNKSTGRGRPTYRMLISDFGLCKKLDVDQTSFLPTMNGGMGAGTVGWRAPEILRGEVK
LDDLSDDHSMSSRGSVSTINGSSSSSSTSGLSTAKPTRLTKSVDIFALGCLYYYTLTNGSHPYGDRFEREVNILK
DAKSLDLLERFGEEGTEACDLIEKMLDPEASERPDTTACLLHPFFWDPARRLNFLQDASDRFEIMCRDPKDPLLL
QLETGALAIVGNDWHARLDRLFVENLGKFRKYDGKSVQDLLRALRNKKHHYQDLPDNVKRSLGPMPEGFLAYFTK
RFPRLFLHVHRVISDTVLRTESMFRSYFELPDS
Length 1158

Coding

Sequence id CopciAB_364173.T0
Sequence >CopciAB_364173.T0
ATGGCGTTCGTATTCTTCCTACAGTTCTTGCTCCTCATCGTGGGCGCGGTCTGCTGGGCAGAGATCGTCAATGTC
CGGTCAACCATCCCAGCAGCGGAGACGGCGGCGCTCATACAACGAACGAGACCAGCACCTACTTATGCGACCGGA
GGGATTCTAGAACCCACCAAAGACCTAGAGCTGCTGGACATTGTCCTGGTAGCCTCGATCGACGGCAAATTCCAT
GCACTCAGTCGCTCGACGGGCAAGATCTTGTGGTCTATGCCTGCATTCGCACGGGCAGAAGGCTCGTCAACTCTT
TCAAGCTTGGCGCCTCTGGTTAGGACGACACACCCAGAAAACGACCCCGACGACTTTGACGACGATACAACACCA
GAAACCTATATCATTGAACCGCAGTCTGGCCACATCTATGTCGTAAACTCAGAAGACGACTCGTTGCAACGGTTC
CCGTTCTCAATGGCGGAGTTGGTTGACATGTCGCCGTTCACCTCCCCAGGTGACGACGAGAAGAGGGTATTCATT
GGGCGCAAGGAGACTTCACTATTGTTACTGGAGCTCGAAACAGGAAGAATCAAGGCGACCCTCAACTCCGAATGT
CCGCCTTATGACGACAGGCGTATTGACCTCGACGAGCTGGAAGAACCAGAGTCGCGGGGCTCATCGACCACCGAA
GTATTCATTGGGCGAACAGATTATTACATTTCCATCTATCCCCACCGCTCTAAGGGCTACGGCACTCGGGCGCCC
GTCCAAAACCTGTCATTCTCAGTCTACGGACCCAACAACGAAGACAACTTGCTCCAAGCAAACTATCGAAGGACT
AGCGACGATGCGTACATCCAAGGTTTTCCCAACGGGGATGTCTACTCCTTTAAGACCAAGTCGGAAGGGGGTAGA
GTCCAAACACAACCTTTATGGGTTCAGAAATTCCATGCACCGACGGTCGCTGTTTTTGATGTCCTACGGGGCTCA
ACTCCACTTCAGCCACATCCTCACGCCTTTGTTCTCCTGCAACCACGACCACGCGCGGAAGATGTCATCCCAGGT
CTCGACCGCTCTCTCTTACGTGGTGCAAAGTCGGCCTACGTTGGGATGGTGGAGGAAACGGGGAGCCTTTACGCT
ATGAGCCCTTCACATTATCCACTGGTTGCGTTTGGGGACGCAGAGGAGGGCAGAAAGGGACGACTTATTGAGGGT
TCTGGGGGTTCAGCGCAAAGCATCCATGATATCATCCGCAACCAGAAGGAGGCTGACAGGCGGATTAGATGCGAG
GATAACCCGAGAGACCGCGAGTGTCTACTGGGTATGCATCCGCTTGACGAAACGGACGGCCATGAAAGTCGAATG
CGACGACTGCTCGAAGGACCTTCAAGCATCAGCCCCATCCCGACGTTCAGACCCGGTCAGAACCAATGGATCGAT
CACGGAATCGAAGTCGTCCCCAACATTGAAGCTCCACCCAACAATTCTCAACAACCTGCCACGCCTGTCCCCCCG
GAGGAAGTACGGAAGACGGGATGGGAATATCTGGGAGTAACACTCGGGCTGGGTTTGGTGTCTTTGTGGTTCTTA
TTCAAGAAGTTCGGCCAGCGAGAGGGATTCAAGGTACCCAAATTCATTCCCGTACCCAACGGGGACGCGCAGATC
GCCCGTCCCCTTGCTCCCATACCGGACACTGCCACCGAGCCAGCACCAGCACCCGAACCAGCTACGGTCCAGCCT
CTTCAGATCATCCCCGAACAGCCTGCACCACCGGCACCCCTACCATTGCCTCTGCCTCCATTGGAGGACCCCACT
ACGGATGCACTTGCCGGAACTGGCGAAGAAGGTGATGACACCGACCGTGAAGGCGATCCAGAGCCCGAGACAGTC
GCAACCCCTGGAAGGAAGAAGCCGAGGAGAGGTAAACGAGGAAAGAAGAAGAAGAAGGACGCCACGCCTATCCCT
GGTGAAGAAGGTGTTGAGGGCAAGGCGCCTAATGGACCCGATGGACCAGCTGCGAATGGCACACCAAACATCAAT
CCGCCAGACAACAACCCAGATGCCACTATCGCTCCTGCAGCCCCACAATCTCCTTCACTTGTCGTCTCATCTCCC
ATAATTCCTGCGGCCGCAGGTCCATCGTTAGTCGTGTCCGATACCATTCTCGGCTTTGGCTCTCATGGAACTGTT
GTCTTCCAAGGTTCTCTACAGGGTCGAGCAGTCGCAGTGAAGCGGCTCCTCAAAGACTTTGTTACTCTGGCTTCA
CGTGAAGTCAGCATCCTCCAAGAGAGTGACGACCACCCGAATGTTATCCGATATTACTACCAAGAAGCCCACGCC
AATTTCCTCTATATCGCTCTTGAACTCTGCCCCGCATCCCTAGCCGACATCATCGAAACTCCTGACCGAGAAGCC
TTCAGAGATATCGCCATTTCCTTCGACCCCAAGAGGGCGTTGAAGCAGATCACGAGCGGTCTCAAGCACCTCCAT
GCGCTCAAACTCGTCCACCGTGACATCAAGCCCCAGAATATTCTTATTACGACAAACAAGAGCACTGGACGTGGG
CGACCGACATATCGTATGCTCATCTCTGACTTCGGATTGTGCAAGAAGTTGGACGTTGACCAAACGAGTTTCTTA
CCAACCATGAATGGCGGGATGGGTGCTGGGACGGTCGGGTGGAGAGCACCGGAGATTTTACGTGGCGAGGTCAAG
CTTGATGATTTGAGCGATGATCACTCCATGAGTTCGAGAGGAAGTGTGTCAACCATTAACGGGTCATCATCGTCG
TCGTCGACGTCGGGTCTCTCAACCGCGAAGCCAACACGACTCACCAAGTCTGTGGATATCTTCGCCCTTGGTTGC
CTGTACTACTACACCTTGACCAACGGCAGCCATCCTTACGGGGATCGATTCGAGCGGGAAGTCAACATCTTGAAG
GACGCCAAGTCGCTGGATTTACTGGAGAGATTTGGAGAGGAAGGAACCGAAGCGTGCGATTTGATCGAGAAGATG
TTGGATCCCGAGGCATCTGAAAGACCGGATACGACTGCGTGCCTATTGCACCCCTTCTTCTGGGATCCCGCACGC
CGCCTTAACTTCCTCCAAGACGCCTCGGACCGGTTCGAAATCATGTGTCGGGACCCCAAGGATCCTCTCCTACTG
CAACTCGAAACCGGTGCGCTGGCCATCGTTGGAAATGACTGGCATGCAAGACTGGACAGGTTGTTTGTTGAGAAC
CTTGGCAAGTTTAGAAAGTATGACGGAAAGTCTGTACAAGATTTGCTTCGTGCTCTTCGTAACAAGAAACACCAT
TATCAAGACTTGCCTGACAATGTTAAGCGAAGTCTTGGGCCGATGCCAGAGGGCTTCCTGGCCTACTTCACGAAA
CGTTTCCCCCGCCTCTTCTTACATGTCCATCGTGTCATCTCCGACACTGTACTACGGACAGAGTCTATGTTTAGA
TCTTACTTTGAACTGCCTGACTCCTGA
Length 3477

Transcript

Sequence id CopciAB_364173.T0
Sequence >CopciAB_364173.T0
GGTTTTCTGCCACCACCACCACCACGAACGACGACTAGAAACCAGCGCCCAACGCCGGGCTGAACGCTTATGGCG
TTCGTATTCTTCCTACAGTTCTTGCTCCTCATCGTGGGCGCGGTCTGCTGGGCAGAGATCGTCAATGTCCGGTCA
ACCATCCCAGCAGCGGAGACGGCGGCGCTCATACAACGAACGAGACCAGCACCTACTTATGCGACCGGAGGGATT
CTAGAACCCACCAAAGACCTAGAGCTGCTGGACATTGTCCTGGTAGCCTCGATCGACGGCAAATTCCATGCACTC
AGTCGCTCGACGGGCAAGATCTTGTGGTCTATGCCTGCATTCGCACGGGCAGAAGGCTCGTCAACTCTTTCAAGC
TTGGCGCCTCTGGTTAGGACGACACACCCAGAAAACGACCCCGACGACTTTGACGACGATACAACACCAGAAACC
TATATCATTGAACCGCAGTCTGGCCACATCTATGTCGTAAACTCAGAAGACGACTCGTTGCAACGGTTCCCGTTC
TCAATGGCGGAGTTGGTTGACATGTCGCCGTTCACCTCCCCAGGTGACGACGAGAAGAGGGTATTCATTGGGCGC
AAGGAGACTTCACTATTGTTACTGGAGCTCGAAACAGGAAGAATCAAGGCGACCCTCAACTCCGAATGTCCGCCT
TATGACGACAGGCGTATTGACCTCGACGAGCTGGAAGAACCAGAGTCGCGGGGCTCATCGACCACCGAAGTATTC
ATTGGGCGAACAGATTATTACATTTCCATCTATCCCCACCGCTCTAAGGGCTACGGCACTCGGGCGCCCGTCCAA
AACCTGTCATTCTCAGTCTACGGACCCAACAACGAAGACAACTTGCTCCAAGCAAACTATCGAAGGACTAGCGAC
GATGCGTACATCCAAGGTTTTCCCAACGGGGATGTCTACTCCTTTAAGACCAAGTCGGAAGGGGGTAGAGTCCAA
ACACAACCTTTATGGGTTCAGAAATTCCATGCACCGACGGTCGCTGTTTTTGATGTCCTACGGGGCTCAACTCCA
CTTCAGCCACATCCTCACGCCTTTGTTCTCCTGCAACCACGACCACGCGCGGAAGATGTCATCCCAGGTCTCGAC
CGCTCTCTCTTACGTGGTGCAAAGTCGGCCTACGTTGGGATGGTGGAGGAAACGGGGAGCCTTTACGCTATGAGC
CCTTCACATTATCCACTGGTTGCGTTTGGGGACGCAGAGGAGGGCAGAAAGGGACGACTTATTGAGGGTTCTGGG
GGTTCAGCGCAAAGCATCCATGATATCATCCGCAACCAGAAGGAGGCTGACAGGCGGATTAGATGCGAGGATAAC
CCGAGAGACCGCGAGTGTCTACTGGGTATGCATCCGCTTGACGAAACGGACGGCCATGAAAGTCGAATGCGACGA
CTGCTCGAAGGACCTTCAAGCATCAGCCCCATCCCGACGTTCAGACCCGGTCAGAACCAATGGATCGATCACGGA
ATCGAAGTCGTCCCCAACATTGAAGCTCCACCCAACAATTCTCAACAACCTGCCACGCCTGTCCCCCCGGAGGAA
GTACGGAAGACGGGATGGGAATATCTGGGAGTAACACTCGGGCTGGGTTTGGTGTCTTTGTGGTTCTTATTCAAG
AAGTTCGGCCAGCGAGAGGGATTCAAGGTACCCAAATTCATTCCCGTACCCAACGGGGACGCGCAGATCGCCCGT
CCCCTTGCTCCCATACCGGACACTGCCACCGAGCCAGCACCAGCACCCGAACCAGCTACGGTCCAGCCTCTTCAG
ATCATCCCCGAACAGCCTGCACCACCGGCACCCCTACCATTGCCTCTGCCTCCATTGGAGGACCCCACTACGGAT
GCACTTGCCGGAACTGGCGAAGAAGGTGATGACACCGACCGTGAAGGCGATCCAGAGCCCGAGACAGTCGCAACC
CCTGGAAGGAAGAAGCCGAGGAGAGGTAAACGAGGAAAGAAGAAGAAGAAGGACGCCACGCCTATCCCTGGTGAA
GAAGGTGTTGAGGGCAAGGCGCCTAATGGACCCGATGGACCAGCTGCGAATGGCACACCAAACATCAATCCGCCA
GACAACAACCCAGATGCCACTATCGCTCCTGCAGCCCCACAATCTCCTTCACTTGTCGTCTCATCTCCCATAATT
CCTGCGGCCGCAGGTCCATCGTTAGTCGTGTCCGATACCATTCTCGGCTTTGGCTCTCATGGAACTGTTGTCTTC
CAAGGTTCTCTACAGGGTCGAGCAGTCGCAGTGAAGCGGCTCCTCAAAGACTTTGTTACTCTGGCTTCACGTGAA
GTCAGCATCCTCCAAGAGAGTGACGACCACCCGAATGTTATCCGATATTACTACCAAGAAGCCCACGCCAATTTC
CTCTATATCGCTCTTGAACTCTGCCCCGCATCCCTAGCCGACATCATCGAAACTCCTGACCGAGAAGCCTTCAGA
GATATCGCCATTTCCTTCGACCCCAAGAGGGCGTTGAAGCAGATCACGAGCGGTCTCAAGCACCTCCATGCGCTC
AAACTCGTCCACCGTGACATCAAGCCCCAGAATATTCTTATTACGACAAACAAGAGCACTGGACGTGGGCGACCG
ACATATCGTATGCTCATCTCTGACTTCGGATTGTGCAAGAAGTTGGACGTTGACCAAACGAGTTTCTTACCAACC
ATGAATGGCGGGATGGGTGCTGGGACGGTCGGGTGGAGAGCACCGGAGATTTTACGTGGCGAGGTCAAGCTTGAT
GATTTGAGCGATGATCACTCCATGAGTTCGAGAGGAAGTGTGTCAACCATTAACGGGTCATCATCGTCGTCGTCG
ACGTCGGGTCTCTCAACCGCGAAGCCAACACGACTCACCAAGTCTGTGGATATCTTCGCCCTTGGTTGCCTGTAC
TACTACACCTTGACCAACGGCAGCCATCCTTACGGGGATCGATTCGAGCGGGAAGTCAACATCTTGAAGGACGCC
AAGTCGCTGGATTTACTGGAGAGATTTGGAGAGGAAGGAACCGAAGCGTGCGATTTGATCGAGAAGATGTTGGAT
CCCGAGGCATCTGAAAGACCGGATACGACTGCGTGCCTATTGCACCCCTTCTTCTGGGATCCCGCACGCCGCCTT
AACTTCCTCCAAGACGCCTCGGACCGGTTCGAAATCATGTGTCGGGACCCCAAGGATCCTCTCCTACTGCAACTC
GAAACCGGTGCGCTGGCCATCGTTGGAAATGACTGGCATGCAAGACTGGACAGGTTGTTTGTTGAGAACCTTGGC
AAGTTTAGAAAGTATGACGGAAAGTCTGTACAAGATTTGCTTCGTGCTCTTCGTAACAAGAAACACCATTATCAA
GACTTGCCTGACAATGTTAAGCGAAGTCTTGGGCCGATGCCAGAGGGCTTCCTGGCCTACTTCACGAAACGTTTC
CCCCGCCTCTTCTTACATGTCCATCGTGTCATCTCCGACACTGTACTACGGACAGAGTCTATGTTTAGATCTTAC
TTTGAACTGCCTGACTCCTGATCGCATTTCGCTTAGTTCCTGTACATTCTCCCTCCCATCCTCACTTCCCGCGAT
ACAGTAATTCATCGACCGACCCGACGGTTATTGCATTCTCTTCAAAAGTTGACGTACTTACCGCTTATATCCTAG
CTCAACTCATCCGCATTGCTCAAGTACTACAATCCTGCTAGTTATCTCACTGCATATTTATCTTGATGCCTCTCA
AACGTGTATTATCTGTACTTCTAAGTAGTTAGCTTTCTGATGCCCCTGCCTGTGTTACATATGATACCGCCAATG
GAATTTCTTTGCACATAG
Length 3843

Gene

Sequence id CopciAB_364173.T0
Sequence >CopciAB_364173.T0
GGTTTTCTGCCACCACCACCACCACGAACGACGACTAGAAACCAGCGCCCAACGCCGGGCTGAACGCTTATGGCG
TTCGTATTCTTCCTACAGTTCTTGCTCCTCATCGTGGGCGCGGTCTGCTGGGCAGAGATCGTCAATGTCCGGTCA
ACCATCCCAGCAGCGGAGACGGCGGCGCTCATACAACGAACGAGACCAGCACCTACTTATGCGACCGGAGGGATT
CTAGAACCCACCAAAGACCTAGAGCTGCTGGACATTGTCCTGGTAGCCTCGATCGACGGCAAATTCCATGCACTC
AGTCGCTCGACGGGCAAGATCTTGTGGTCTATGCCTGCATTCGCACGGGCAGAAGGCTCGTCAACTCTTTCAAGC
TTGGCGCCTCTGGTTAGGACGACACACCCAGAAAACGACCCCGACGACTTTGACGACGATACAACACCAGAAACC
TATATCATTGAACCGCAGTCTGGCCACATCTATGTCGTAAACTCAGAAGACGACTCGTTGCAACGGTTCCCGTTC
TCAATGGCGGAGTTGGTTGACATGTCGCCGTTCACCTCCCCAGGTGACGACGAGAAGAGGGTATTCATTGGGCGC
AAGGAGACTTCACTATTGTTACTGGAGCTCGAAACAGGAAGAATCAAGGCGACCCTCAACTCCGAATGTCCGCCT
TATGACGACAGGCGTATTGACCTCGACGAGCTGGAAGAACCAGAGTCGCGGGGCTCATCGACCACCGAAGTATTC
ATTGGGCGAACAGGTGCGGTGTTGACAGATTTGCGACCTGGAATTCAGCGCTGATGGCTAATTTCCCTACTTGGC
AGATTATTACATTTCCATCTATCCCCACCGCTCTAAGGGCTACGGCACTCGGGCGCCCGTCCAAAACCTGTCATT
CTCAGTCTACGGACCCAACAACGAAGACAACTTGCTCCAAGCAAACTATCGAAGGACTAGCGACGATGCGTACAT
CCAAGGTTTTCCCAACGGGGATGTCTACTCCTTTAAGACCAAGTCGGAAGGGGGTAGAGTCCAAACACAACCTTT
ATGGGTTCAGAAATTCCATGCACCGACGTGAGTTTGACGTTAAGAGTACCCTCGTTACATACTCAACAGCTTGCA
GGGTCGCTGTTTTTGATGTCCTACGGGGCTCAACTCCACTTCAGCCACATCCTCACGCCTTTGTTCTCCTGCAAC
CACGACCACGCGCGGAAGATGTCATCCCAGGTCTCGACCGCTCTCTCTTACGTGGTGCAAAGTCGGCCTACGTTG
GGATGGTGGAGGAAACGGGGAGCCTTTACGCTATGAGCCCTTCACATTATCCACTGGTTGCGTTTGGGGACGCAG
AGGAGGGCAGAAAGGGACGACTTATTGAGGGTTCTGGGGGTTCAGCGCAAAGCATCCATGATATCATCCGCAACC
AGAAGGAGGCTGACAGGCGGATTAGATGCGAGGATAACCCGAGAGACCGCGAGTGTCTACTGGGTATGCATCCGC
TTGACGAAACGGACGGCCATGAAAGTCGAATGCGACGACTGCTCGAAGGACCTTCAAGCATCAGCCCCATCCCGA
CGTTCAGACCCGGTCAGAACCAATGGATCGATCACGGAATCGAAGTCGTCCCCAACATTGAAGCTCCACCCAACA
ATTCTCAACAACCTGCCACGCCTGTCCCCCCGGAGGAAGTACGGAAGACGGGATGGGAATATCTGGGAGTAACAC
TCGGGCTGGGTTTGGTGTCTTTGTGGTTCTTATTCAAGAAGTTCGGCCAGCGAGAGGGATTCAAGGTACCCAAAT
TCATTCCCGTACCCAACGGGGACGCGCAGATCGCCCGTCCCCTTGCTCCCATACCGGACACTGCCACCGAGCCAG
CACCAGCACCCGAACCAGCTACGGTCCAGCCTCTTCAGATCATCCCCGAACAGCCTGCACCACCGGCACCCCTAC
CATTGCCTCTGCCTCCATTGGAGGACCCCACTACGGATGCACTTGCCGGAACTGGCGAAGAAGGTGATGACACCG
ACCGTGAAGGCGATCCAGAGCCCGAGACAGTCGCAACCCCTGGAAGGAAGAAGCCGAGGAGAGGTAAACGAGGAA
AGAAGAAGAAGAAGGACGCCACGCCTATCCCTGGTGAAGAAGGTGTTGAGGGCAAGGCGCCTAATGGACCCGATG
GACCAGCTGCGAATGGCACACCAAACATCAATCCGCCAGACAACAACCCAGATGCCACTATCGCTCCTGCAGCCC
CACAATCTCCTTCACTTGTCGTCTCATCTCCCATAATTCCTGCGGCCGCAGGTCCATCGTTAGTCGTGTCCGATA
CCATTCTCGGTGAGCACTGCCCTTCCTGTCACTGTCAATCAATTGAACTGACTTCTTCTTAGGCTTTGGCTCTCA
TGGAACTGTTGTCTTCCAAGGTTCTCTACAGGGTCGAGCAGTCGCAGTGAAGCGGCTCCTCAAAGACTTTGTTAC
TCTGGCTTCACGTGAAGTCAGCATCCTCCAAGAGAGTGACGACCACCCGAATGTTATCCGATATTACTACCAAGA
AGCCCACGCCAATTTCCTCTATATCGCTCTTGAACTCTGCCCCGCATCCCTAGCCGACATCATCGAAACTCCTGA
CCGAGAAGCCTTCAGAGATATCGCCATTTCCTTCGACCCCAAGAGGGCGTTGAAGCAGATCACGAGCGGTCTCAA
GCACCTCCATGCGCTCAAACTCGTCCACCGTGACATCAAGCCCCAGAATATTCTTATTACGACAAACAAGAGCAC
TGGACGTGGGCGACCGACATATCGTATGCTCATCTCTGACTTCGGATTGTGCAAGAAGTTGGACGTTGACCAAAC
GAGTTTCTTACCAACCATGAATGGCGGGATGGGTGCTGGGACGGTCGGGTGGAGAGCACCGGAGATTTTACGTGG
CGAGGTCAAGCTTGATGATTTGAGCGATGATCACTCCATGAGTTCGAGAGGAAGTGTGTCAACCATTAACGGGTC
ATCATCGTCGTCGTCGACGTCGGGTCTCTCAACCGCGAAGCCAACACGACTCACCAAGTCTGTGGATATCTTCGC
CCTTGGTTGCCTGTACTACTACACCTTGACCAACGGCAGCCATCCTTACGGGGATCGATTCGAGCGGGAAGTCAA
CATCTTGAAGGACGCCAAGTCGCTGGATTTACTGGAGAGATTTGGAGAGGAAGGAACCGAAGCGTGCGATTTGAT
CGAGAAGATGTTGGATCCCGAGGCATCTGAAAGGTATGCCAGCTTTGATACTCTAATTGCCTATTTTCGGACGGA
ACGCCTAACCCTTGATCATCAGACCGGATACGACTGCGTGCCTATTGCACCCCTTCTTCTGGGATCCCGCACGCC
GCCTTAACTTCCTCCAAGACGCCTCGGACCGGTTCGAAATCATGTGTCGGGACCCCAAGGATCCTCTCCTACTGC
AACTCGAAACCGGTGCGCTGGCCATCGTTGGAAATGACTGGCATGCAAGACTGGACAGGTTGTTTGTTGAGAACC
TTGGCAAGTTTAGAAAGTATGACGGAAAGTCTGTACAAGATTTGCTTCGTGCTCTTCGTAACAAGGTATGCTGTT
TCCGCCTTGATGCCTCCTCCAATGGATACTCACATCTCATTTGTAGAAACACCATTATCAAGACTTGCCTGACAA
TGTTAAGCGAAGTCTTGGGCCGATGCCAGAGGGCTTCCTGGCCTACTTCACGAAACGTTTCCCCCGCCTCTTCTT
ACATGTCCATCGTGTCATCTCCGACACTGTACTACGGACAGAGTCTATGTTTAGATCTTACTTTGAACTGCCTGA
CTCCTGATCGCATTTCGCTTAGTTCCTGTACATTCTCCCTCCCATCCTCACTTCCCGCGATACAGTAATTCATCG
ACCGACCCGACGGTTATTGCATTCTCTTCAAAAGTTGACGTACTTACCGCTTATATCCTAGCTCAACTCATCCGC
ATTGCTCAAGTACTACAATCCTGCTAGTTATCTCACTGCATATTTATCTTGATGCCTCTCAAACGTGTATTATCT
GTACTTCTAAGTAGTTAGCTTTCTGATGCCCCTGCCTGTGTTACATATGATACCGCCAATGGAATTTCTTTGCAC
ATAG
Length 4129