Systematic name | CopciAB_371647 | Strain | Coprinopsis cinerea Okayama 7 |
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Standard name | pgxC | Synonyms | 371647 |
Uniprot id | Functional description | Belongs to the glycosyl hydrolase 28 family | |
Location | scaffold_10:1508955..1511201 | Strand | + |
Gene length (nt) | 2247 | Transcript length (nt) | 1525 |
CDS length (nt) | 1368 | Protein length (aa) | 455 |
Strain name | Gene / Protein name |
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Strain name | Gene / Protein name | Pident | E-value | Bits |
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Agrocybe aegerita | Agrae_CAA7262631 | 71.7 | 6.351E-216 | 668 |
Pleurotus eryngii ATCC 90797 | Pleery1_1437617 | 66.9 | 9.532E-202 | 627 |
Hypsizygus marmoreus strain 51987-8 | Hypma_RDB19692 | 66.2 | 2.944E-199 | 620 |
Agaricus bisporus var bisporus (H97) | Agabi_varbisH97_2_121792 | 65.2 | 5.836E-195 | 607 |
Agaricus bisporus var. burnettii JB137-S8 | Agabi_varbur_1_131529 | 64.8 | 3.267E-193 | 602 |
Auricularia subglabra | Aurde3_1_1314644 | 61.9 | 4.323E-180 | 565 |
Pleurotus ostreatus PC15 | PleosPC15_2_1048073 | 61.8 | 2.287E-180 | 565 |
Pleurotus ostreatus PC9 | PleosPC9_1_59334 | 61.8 | 2.239E-180 | 565 |
Flammulina velutipes | Flave_chr04AA00471 | 57.7 | 1.815E-165 | 522 |
Lentinula edodes W1-26 v1.0 | Lentinedodes1_10646 | 36.9 | 2.684E-89 | 301 |
Ganoderma sp. 10597 SS1 v1.0 | Gansp1_38626 | 38.4 | 4.464E-63 | 224 |
Grifola frondosa | Grifr_OBZ68558 | 44.2 | 1.299E-52 | 193 |
Lentinula edodes B17 | Lened_B_1_1_11129 | 47.7 | 5.898E-27 | 115 |
Lentinula edodes NBRC 111202 | Lenedo1_731020 | 24.3 | 2.332E-17 | 85 |
Name | Summary | Attribution | Assay type | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Carbon metabolism | Transcriptional changes along alternative morphogenetic paths of C. cinerea | Xie et al. 2020 | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Complex carbon sources 1 (long incubation) | Expression profiling on diverse complex carbon sources. | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Coprinopsis challenged with bacteria | Transcriptional response to Bacillus subtilis and Escherichia coli. | Kombrink et al. 2018 | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Early development 1 | Time series expression profiling of basidiospore and oidium germination | Hegedus et al. | QuantSeq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Early development 2 | Time series expression profiling of mycelial growth, light induction and fruiting body initiation. | Hegedus et al. | QuantSeq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Fruiting body development | RNA-Seq analysis of fruiting body development | Krizsan et al. 2019 | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Nitrogen sources (12h incubation) | Expression profiling on diverse nitrogen sources. | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Plant biomass (12h incubation) | Expression profiling on diverse plant biomasses as carbon sources. | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Simple and complex carbon and nitrogen sources | Expression profiling on diverse complex carbon and nitrogen sources. | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Simple and complex carbon sources (12h incubation) | Expression profiling on diverse complex carbon sources. | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Starvation induced by water agar transfer | Expression profiling on starvation induced by transfer to water agar | Hegedus et al. | QuantSeq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Straw time series | Time series expression profiling on straw as a carbon source | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Stress conditions 1 | Expression profiling under various stress conditions | Hegedus et al. | QuantSeq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Stress conditions 2 | Expression profiling under various stress conditions | Hegedus et al. | QuantSeq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Systematic name | pgxC |
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Protein id | CopciAB_371647.T0 |
Description | Belongs to the glycosyl hydrolase 28 family |
Analysis | Signature accession | Signature description | InterPro Accession | Start | End |
---|---|---|---|---|---|
Pfam | PF00295 | Glycosyl hydrolases family 28 | IPR000743 | 130 | 372 |
Prediction | Start | End | Score |
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SP(Sec/SPI) | 1 | 27 | 0.9877 |
Domain n | Start | End | Length |
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No records |
Accession | Description |
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IPR011050 | Pectin lyase fold/virulence factor |
IPR000743 | Glycoside hydrolase, family 28 |
IPR012334 | Pectin lyase fold |
Go id | Term | Ontology |
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GO:0004650 | polygalacturonase activity | MF |
GO:0005975 | carbohydrate metabolic process | BP |
KEGG Orthology |
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K01213 |
COG category | Description |
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G | Belongs to the glycosyl hydrolase 28 family |
Class | Family | Subfamily |
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GH | GH28 |
Group |
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No records |
Arrow shows the origin of gene family containing CopciAB_371647.
Sequence id | CopciAB_371647.T0 |
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Sequence |
>CopciAB_371647.T0 MGKTSLMLRFIASSLWLCLLFAALGRAQDLDADEVLEAGAPPRRCIIPYSRNPNQDDSQSILRTVNRCSTNSIIE FRPANYSVYTPISLLNLRNVKILLNGNIVLPSNITKVQVEINNTLNQPALYATPWIYIQGTNVELVGSSDFKYGR FYSFGQQWWDLGIRTLRPHLATFNVTNGLLKNLKIIKPIAWGWSIPGQNIRIENHFVDAKPENATRDDTVSFPFN TDGFNLSGKNITIDGYYGHNGDDCVSVINGARDIVAKNGYCGFSSHGLSIGSLGRDGAEHTVKNVLFKNWTMDGA VYGARFKSWTGGRGYGENIAWEDITLVNVSTGIFITQNYYDQDKGPRPPNPGNTSTKVINISFRNFKGSLGTNWT DGSCISTPCWNYVEGLDEPKAVILDLYPDTATNVTLENIDIHPFNQPGEVANVMCDPTALSAREQSRLGFKCTNG PFEAT |
Length | 455 |
Sequence id | CopciAB_371647.T0 |
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Sequence |
>CopciAB_371647.T0 ATGGGGAAGACGAGCTTGATGTTGAGGTTTATTGCTTCGTCGCTTTGGCTCTGCCTCCTCTTTGCTGCTCTTGGG CGTGCCCAGGATCTCGACGCCGACGAGGTACTGGAGGCGGGGGCACCCCCTCGTAGATGCATTATTCCGTACTCC AGGAATCCGAACCAGGACGACTCGCAGTCTATCCTGCGCACTGTGAATAGGTGCTCGACCAACTCGATCATCGAG TTTAGGCCGGCCAATTATAGTGTTTACACTCCCATCTCGCTTTTGAATCTTCGAAACGTCAAGATTCTTTTGAAT GGGAATATTGTCCTCCCTTCGAATATAACGAAGGTGCAAGTCGAGATTAACAATACGCTGAACCAGCCTGCTCTT TATGCCACGCCCTGGATCTACATCCAAGGGACGAACGTCGAGCTCGTTGGATCAAGCGATTTCAAGTACGGGCGC TTCTACAGTTTCGGGCAGCAATGGTGGGACTTGGGTATCCGGACCCTCCGACCGCACCTTGCAACATTTAACGTC ACGAACGGCCTTTTGAAGAACCTCAAGATTATCAAACCCATTGCTTGGGGATGGAGTATCCCCGGCCAGAACATC AGGATTGAAAACCATTTCGTGGATGCGAAGCCCGAGAATGCGACGCGGGATGATACAGTCAGCTTCCCTTTCAAT ACCGATGGGTTCAACTTGTCTGGCAAGAATATCACCATTGACGGGTACTACGGACACAATGGCGACGATTGCGTT TCTGTCATCAACGGAGCTCGAGACATTGTCGCGAAGAACGGGTACTGTGGATTTTCCTCCCATGGACTCTCCATC GGCTCTTTGGGGCGTGATGGGGCGGAGCATACAGTTAAAAATGTGTTATTCAAGAATTGGACTATGGATGGAGCT GTGTATGGCGCTCGGTTCAAGAGTTGGACTGGGGGAAGGGGATATGGAGAGAACATTGCTTGGGAGGATATCACG CTCGTCAACGTATCCACCGGTATATTCATCACTCAGAACTACTATGACCAAGACAAAGGACCGCGCCCACCCAAT CCAGGCAACACAAGCACCAAAGTGATCAATATATCCTTCAGGAACTTTAAAGGAAGTCTAGGTACCAATTGGACG GACGGATCGTGTATAAGCACGCCTTGTTGGAATTACGTGGAGGGGCTTGATGAACCTAAAGCTGTTATTTTGGAT TTGTATCCTGATACTGCGACGAATGTCACGTTGGAGAACATCGATATACACCCATTCAACCAGCCTGGAGAGGTG GCGAATGTGATGTGCGACCCGACGGCTCTAAGCGCGAGGGAGCAGAGTAGGCTGGGATTCAAGTGCACCAACGGA CCTTTCGAGGCGACGTAG |
Length | 1368 |
Sequence id | CopciAB_371647.T0 |
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Sequence |
>CopciAB_371647.T0 AGGGGTTGGACTACATTCGACCTCATTCCATCTTTCACCGGCGCTTTGCAGAAGGAGGCATGGGGAAGACGAGCT TGATGTTGAGGTTTATTGCTTCGTCGCTTTGGCTCTGCCTCCTCTTTGCTGCTCTTGGGCGTGCCCAGGATCTCG ACGCCGACGAGGTACTGGAGGCGGGGGCACCCCCTCGTAGATGCATTATTCCGTACTCCAGGAATCCGAACCAGG ACGACTCGCAGTCTATCCTGCGCACTGTGAATAGGTGCTCGACCAACTCGATCATCGAGTTTAGGCCGGCCAATT ATAGTGTTTACACTCCCATCTCGCTTTTGAATCTTCGAAACGTCAAGATTCTTTTGAATGGGAATATTGTCCTCC CTTCGAATATAACGAAGGTGCAAGTCGAGATTAACAATACGCTGAACCAGCCTGCTCTTTATGCCACGCCCTGGA TCTACATCCAAGGGACGAACGTCGAGCTCGTTGGATCAAGCGATTTCAAGTACGGGCGCTTCTACAGTTTCGGGC AGCAATGGTGGGACTTGGGTATCCGGACCCTCCGACCGCACCTTGCAACATTTAACGTCACGAACGGCCTTTTGA AGAACCTCAAGATTATCAAACCCATTGCTTGGGGATGGAGTATCCCCGGCCAGAACATCAGGATTGAAAACCATT TCGTGGATGCGAAGCCCGAGAATGCGACGCGGGATGATACAGTCAGCTTCCCTTTCAATACCGATGGGTTCAACT TGTCTGGCAAGAATATCACCATTGACGGGTACTACGGACACAATGGCGACGATTGCGTTTCTGTCATCAACGGAG CTCGAGACATTGTCGCGAAGAACGGGTACTGTGGATTTTCCTCCCATGGACTCTCCATCGGCTCTTTGGGGCGTG ATGGGGCGGAGCATACAGTTAAAAATGTGTTATTCAAGAATTGGACTATGGATGGAGCTGTGTATGGCGCTCGGT TCAAGAGTTGGACTGGGGGAAGGGGATATGGAGAGAACATTGCTTGGGAGGATATCACGCTCGTCAACGTATCCA CCGGTATATTCATCACTCAGAACTACTATGACCAAGACAAAGGACCGCGCCCACCCAATCCAGGCAACACAAGCA CCAAAGTGATCAATATATCCTTCAGGAACTTTAAAGGAAGTCTAGGTACCAATTGGACGGACGGATCGTGTATAA GCACGCCTTGTTGGAATTACGTGGAGGGGCTTGATGAACCTAAAGCTGTTATTTTGGATTTGTATCCTGATACTG CGACGAATGTCACGTTGGAGAACATCGATATACACCCATTCAACCAGCCTGGAGAGGTGGCGAATGTGATGTGCG ACCCGACGGCTCTAAGCGCGAGGGAGCAGAGTAGGCTGGGATTCAAGTGCACCAACGGACCTTTCGAGGCGACGT AGCTTCTTCAGCGTGGCTACCATCTCTTTCAGTCGACTACCTTATAGGTGTCATGTGTGTACTTGTCTGCATTGA ATCAAACTTTAGTCTTCAAGGTGGA |
Length | 1525 |
Sequence id | CopciAB_371647.T0 |
---|---|
Sequence |
>CopciAB_371647.T0 AGGGGTTGGACTACATTCGACCTCATTCCATCTTTCACCGGCGCTTTGCAGAAGGAGGCATGGGGAAGACGAGCT TGATGTTGAGGTTTATTGCTTCGTCGCTTTGGCTCTGCCTCCTCTTTGCTGCTCTTGGGCGTGCCCAGGATCTCG ACGCCGACGAGGTACTGGAGGCGGGGGCACCCCCTCGTAGATGCATTATTCCGTACTCCAGGAATCCGAACCAGG ACGACTCGCAGTCTATCCTGCGCACTGTGAATAGGTGCTCGACCAACTCGATCATCGAGTTTAGGCCGGCCAATT ATAGTGTTTACACTCCCATCTCGCTTTTGAATCTTCGTAAGTGCTTCATTTAAAGTTTGGGACTGGGTGCGGCGA CTGATGGTATGTACGTTGCATCTGGTGGTTAGGAAACGTCAAGATTCTTTTGAATGGGAATATTGTCCTCCCTTC GAATATAACGAAGGTGCAAGTCGAGATTAACAATACGCTGAACCAGCCTGCTGTGCGTGTTTGCGACTTTTTCGA GGTCACCTTTGTGCTGATGGTATAGCTGTAGCTTTATGCCACGCCCTGGATCTACATCCAAGGGACGAACGTCGA GCTCGTTGGATCAAGCGATTTCAAGTACGGGCGCTTCTACAGTTTCGGGCAGCAATGGTGGGACTTGGGTATCCG GGTACGCCTTTCTTCCGTGACTCTACCTCTCCCTCTATCCATTATTGACGCCTGTGAATTAGACCCTCCGACCGC ACCTTGCAACATTTAACGTCACGAACGGCCTTTTGAAGAACCTCAAGATTATCAAACCCATTGCTTGGGGATGGA GTATCCCCGGCCAGAACATCAGGATTGAAAACCATTTCGTGGATGCGAAGCCCGAGAATGCGACGCGGGATGATA CAGTCGTGAGTCTCCCTCTCTTTTAACGTGTGGCCCCAAAGTATGTGCTCTAATGCATGCGTTTGGTTTTTTGTA GAGCTTCCCTTTCAATACGTACGTGGATGGTGTTTTTCCAGTGCGAGTGATTGGATGTTTATTGTCGCTAGCGAT GGGTTCAACTTGTCTGGCAAGAATATCACCATTGACGGGTGTGTTTCCTCTTTCCAGCGCCTTAATTCCAGAGGT TGTCATTTCCTAACCGTCGGATATCAGGTACTACGGACACAATGGCGACGATTGCGTTTCTGTCATCAACGGAGC TCGAGACATTGTCGCGAAGAACGGGTACTGTGGATTTTCCTCCCATGGACTCTCCATCGGCTCTTTGGGGCGTGA TGGGGCGGAGCATACAGTTAAAAATGTGTTATTCAAGAATTGGACTATGGATGGAGCTGTGTATGGCGCTCGGGT AAGTTGAACCCTCATTCGTGGTGCGGCCCGTGATGCTGACGCTAATGCTGCACACAGTTCAAGAGTTGGACTGGG GGAAGGGGATATGGAGAGAACATTGCTTGGGAGGATATCACGCTCGTCAACGTATCCACCGGTATATTCATCACT CAGAAGTGAGTATCGTTCCTAGCATCGCTGGTACCTGAGTGACATCGCTAACCTGTATGAATCCGATCAGCTACT ATGACCAAGTGAGTCACTTTAAATTCCTCAGCACCCCCATTTCTAACGACGTCGCTATAGGACAAAGGACCGCGC CCACCCAATCCAGGCAACACAAGCACCAAAGTGATCAATATATCCTTCAGGAACTTTAAAGGAAGTCTAGGTACC AATTGGAGTAAGTCATTCGCCAAATCGGGGTACGGTCTTGGCTTATTGACGGTCCTGTCACCGATCGCGCCCCTA TTTTCGTTTTTGAACCTGCTTTGAAAATGCGAAACTACGTGAAACTATGTTAGCGGACGGATCGTGTATAAGCAC GCCTTGTTGGAATTACGTGGAGGGGCTTGATGAACCTAAAGCTGTTATTTTGGATTTGTATCCTGATACTGGTGA GTCAGGTTCGGTGGATGCGGGGTGCGGTGGCTGATCGTGTTGTACAGCGACGAATGTCACGTTGGAGAACATCGA TATACACCCATTCAACCAGCCTGGAGAGGTGGCGAATGTGATGTGCGACCCGACGGCTCTAAGCGCGAGGGAGCA GAGTAGGCTGGGATTCAAGTGCACCAACGGACCTTTCGAGGCGACGTAGCTTCTTCAGCGTGGCTACCATCTCTT TCAGTCGACTACCTTATAGGTGTCATGTGTGTACTTGTCTGCATTGAATCAAACTTTAGTCTTCAAGGTGGA |
Length | 2247 |