CopciAB_379923
Coprinopsis cinerea A43mutB43mut pab1-1 #326

General data

Systematic name CopciAB_379923 Strain Coprinopsis cinerea Okayama 7
Standard name - Synonyms 379923
Uniprot id Functional description
Location scaffold_11:643583..644357 Strand +
Gene length (nt) 775 Transcript length (nt) 675
CDS length (nt) 675 Protein length (aa) 224

Reciprocal best hits in model fungi

Strain name Gene / Protein name

Orthologs in mushroom models

Strain name Gene / Protein name Pident E-value Bits
0

Expression

Name Summary Attribution Assay type
Carbon metabolism Transcriptional changes along alternative morphogenetic paths of C. cinerea Xie et al. 2020 RNA-Seq
Sample Mean cpm SD cpm Se of mean
sclerotia 0 0 0
oidia 0 0 0
vegetative_mycelium 0 0 0
primordia 0 0 0
hyphal_knot 0 0 0
young_fruiting_body 0 0 0
Complex carbon sources 1 (long incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control - glucose 0 0 0
Wheat bran 0 0 0
Horse manure 0 0 0
Oak leaves 0 0 0
Hay 0 0 0
Corn stalk 0 0 0
Pectine 0 0 0
Microcrystalline cellulose 0 0 0
Xylose 0 0 0
Cellobiose 0 0 0
Lignin 0 0 0
Apple peels 0 0 0
Coprinopsis challenged with bacteria Transcriptional response to Bacillus subtilis and Escherichia coli. Kombrink et al. 2018 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control 0 0 0
Bsubtilis 0 0 0
Ecoli 0 0 0
Early development 1 Time series expression profiling of basidiospore and oidium germination Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
BS 0h 0 0 0
BS 4h 0 0 0
BS 8h 0 0 0
BS 12h 0 0 0
Oidia 0 h 0 0 0
Oidia 18 h 0 0 0
Sclerotia 0 0 0
Early development 2 Time series expression profiling of mycelial growth, light induction and fruiting body initiation. Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
DM 12h 0 0 0
DM 36h 0 0 0
DM 60h 0.0039 0.0068 0.0039
DM 84h 0 0 0
DM 108h 0 0 0
DM 132h 0.0139 0.024 0.0139
DM 156hAE 0 0 0
ELI1hAE 0 0 0
ELI2hAE 0 0 0
LI2hAE 0 0 0
LI6hAE 0 0 0
LI12hAE 0 0 0
LI18hAE 0.017 0.0295 0.017
LI 24hAE 0 0 0
DM 156hAM 0 0 0
ELI1hAM 0 0 0
ELI2hAM 0 0 0
LI2hAM 0 0 0
LI6hAM 0.0057 0.0099 0.0057
LI12hAM 0 0 0
LI18hAM 0 0 0
LI 24hAM 0 0 0
LI 24hHK 0 0 0
L/D 6h 0 0 0
L/D 12h 0 0 0
L/D 18h 0 0 0
L/D 24h 0 0 0
Fruiting body development RNA-Seq analysis of fruiting body development Krizsan et al. 2019 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Vegetative mycelium 0 0 0
Hyphal knots 0 0 0
Primordium 1 0 0 0
Primordium 2 0 0 0
Young Fruiting body cap 0 0 0
Younf fruiting body gill 0 0 0
Young fruiting body stipe 0 0 0
Mature fruiting body cap_gill 0 0 0
Mature fruiting body stipe 0 0 0
Nitrogen sources (12h incubation) Expression profiling on diverse nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Complete medium - control 0 0 0
NH4NO3 0 0 0
Proline 0 0 0
Tryptophan 0 0 0
Isoleucin 0 0 0
Arginine 0 0 0
Metionine 0 0 0
NaNO3 0 0 0
Plant biomass (12h incubation) Expression profiling on diverse plant biomasses as carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 0 0 0
Citrus peel 0 0 0
Poplar leaves 0 0 0
Typha leaves 0 0 0
Overwintered Salix leaves 0 0 0
Reed flowering 0 0 0
Tigernut 0 0 0
Energy cane 0 0 0
Guar gum 0 0 0
Apple peels 0 0 0
Cellobiose 0 0 0
Corn stalk 0.0628 0.0545 0.0314
Horse manure 0.0199 0.0345 0.0199
Lignin 0 0 0
Microcrystalline cellulose 0 0 0
Oak leaves 0.0979 0.1695 0.0979
Pectin esterified 0 0 0
Poplar sawdust 0 0 0
Wheat bran 0 0 0
Chlamydomonas reinhardtii 0 0 0
Vertatryl alcohol 0 0 0
Furfural 0 0 0
Autoclaved mycelium 0 0 0
Simple and complex carbon and nitrogen sources Expression profiling on diverse complex carbon and nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 0 0 0
Ribose 0 0 0
Mannose 0 0 0
Fructose 0 0 0
Arabinose 0 0 0
Xylose 0 0 0
Galacturonic acid 0 0 0
Rhamnogalacturonan 0 0 0
Pectin esterified 0 0 0
Polygalacturonic acid 0 0 0
Sodium acetate 0 0 0
No nitrogen 0.0339 0.0587 0.0339
BSA 0 0 0
Glutamine 0 0 0
No phosphate 0.0306 0.053 0.0306
No carbon 0 0 0
No sulphur 0 0 0
Simple and complex carbon sources (12h incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 0 0 0
Amylose 0 0 0
Fucose 0 0 0
Galactose 0 0 0
Lactose 0 0 0
Maltose 0 0 0
Mannitol 0 0 0
Rhamnose 0 0 0
Sorbitol 0 0 0
Trehalose 0 0 0
Glycerol 0 0 0
Glucuronic acid 0 0 0
Arabinan 0 0 0
Galactan 0 0 0
Galactomannan 0 0 0
Glucan 0 0 0
Xylan 0 0 0
Xyloglucan 0 0 0
Arabinogalactan 0 0 0
Pectin 0 0 0
Rhamnogalacturonan 0 0 0
Polygalacturonic acid 0 0 0
Mannan 0 0 0
Amylopectin 0 0 0
Inulin 0 0 0
BSA 0 0 0
Starvation induced by water agar transfer Expression profiling on starvation induced by transfer to water agar Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Control 0.0039 0.0068 0.0039
2h WAT 0 0 0
4h WAT 0 0 0
8h WAT 0 0 0
16h WAT 0 0 0
24h WAT 0 0 0
WAT hyphal knot -30h 0 0 0
WAT hyphal knot -22h 0 0 0
WAT hyphal knot -15h 0 0 0
WAT hyphal knot -7.5h 0 0 0
WAT hyphal knot 0 0 0
WAT hyphal knot +7.5h 0 0 0
Straw time series Time series expression profiling on straw as a carbon source Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 0 0 0
Straw 3h 0 0 0
Straw 6h 0.1009 0.1748 0.1009
Straw 12h 0 0 0
Straw 24h 0 0 0
Stress conditions 1 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 0 0 0
Frost (-20C, 30min) 0 0 0
Heat shock (47C, 2h) 0 0 0
High CO2 0 0 0
Drought (4% agar, 12h) 0.0033 0.0057 0.0033
Oxidative (1mM H2O2, 3h) 0 0 0
Acidic (pH4, 3h) 0 0 0
Alkaline (pH9, 3h) 0 0 0
Osmotic (sorbitol 2h) 0.0065 0.0112 0.0065
CongoRed (3h) 0 0 0
Cobalt chloride control 0 0 0
Cobalt chloride 2mM 0 0 0
Stress conditions 2 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 0 0 0
Cold stimulation 0 0 0
Scratched surface 0.0103 0.0178 0.0103
Ca2+, 200mM, 24h 0 0 0
Cu2+, 2mM, 6h 0 0 0
Voriconazole 0 0 0
Trichoderma interaction, early 0.0359 0.0622 0.0359
Trichoderma interaction 60h 0.4514 0.5455 0.3149
Cobalt chloride 2mM repeat 0 0 0
Hypoxia 0 0 0
Hypoxia control 0.0162 0.028 0.0162
Protoplastation control 0 0 0
Protoplastation 3.5h 0 0 0
Protoplastation 1.5h 0 0 0

General data

Systematic name -
Protein id CopciAB_379923.T0
Description

Annotation summary

Conserved domains

Analysis Signature accession Signature description InterPro Accession Start End
No records

SignalP

Prediction Start End Score
No records

Transmembrane domains

Domain n Start End Length
No records

InterPro

Accession Description
No records

GO

Go id Term Ontology
No records

KEGG

KEGG Orthology
No records

EggNOG

COG category Description
No records

CAZy

Class Family Subfamily
No records

Transcription factor

Group
No records

Conservation of CopciAB_379923 across fungi.

Arrow shows the origin of gene family containing CopciAB_379923.

Protein

Sequence id CopciAB_379923.T0
Sequence >CopciAB_379923.T0
MDYAMRNLAFDDDITTITAFLDWDDVAIIPFILCSKYVAEIHPDWGGEDWERETGGFSSIQPPAAEGVTDEELEN
VFQRRLYAAAFLTEKKRMEEERTTATGEWQAVANPMDRTPEPNEEDTDEEDAVSSDSEDVEEEVDSEEERRLQDE
CDRAFERRELVFYDHFRKEYRKRLERLDPRFATPGFWKMAEDALKIHHLVTYGAEEWISAYYGQLRVRAMPARE
Length 224

Coding

Sequence id CopciAB_379923.T0
Sequence >CopciAB_379923.T0
ATGGACTATGCGATGCGCAACTTAGCCTTTGACGACGATATCACGACCATCACGGCGTTTCTGGATTGGGACGAC
GTCGCCATTATACCCTTCATCCTCTGTTCCAAGTACGTGGCCGAGATCCATCCGGATTGGGGAGGTGAAGACTGG
GAGAGAGAAACTGGTGGCTTCAGCTCCATTCAGCCTCCAGCTGCAGAGGGTGTAACGGATGAAGAACTCGAAAAC
GTTTTTCAAAGAAGGCTGTACGCCGCGGCCTTTCTGACGGAGAAGAAACGGATGGAAGAAGAGAGAACCACAGCG
ACAGGAGAGTGGCAGGCTGTCGCTAATCCGATGGACAGGACACCCGAACCAAATGAGGAGGACACGGATGAAGAA
GACGCTGTTAGTTCAGATAGCGAAGACGTGGAAGAGGAAGTGGATTCGGAGGAAGAAAGGCGTTTGCAGGACGAG
TGTGACAGGGCATTCGAGAGGCGAGAGCTCGTATTTTACGACCACTTCCGCAAAGAGTACAGGAAGAGGTTGGAG
CGCCTTGACCCAAGGTTTGCAACGCCCGGATTCTGGAAGATGGCGGAGGATGCGTTGAAGATTCACCATCTTGTC
ACTTACGGGGCCGAGGAGTGGATTAGTGCGTATTACGGCCAGCTTAGGGTGCGGGCAATGCCCGCGAGAGAGTAA
Length 675

Transcript

Sequence id CopciAB_379923.T0
Sequence >CopciAB_379923.T0
ATGGACTATGCGATGCGCAACTTAGCCTTTGACGACGATATCACGACCATCACGGCGTTTCTGGATTGGGACGAC
GTCGCCATTATACCCTTCATCCTCTGTTCCAAGTACGTGGCCGAGATCCATCCGGATTGGGGAGGTGAAGACTGG
GAGAGAGAAACTGGTGGCTTCAGCTCCATTCAGCCTCCAGCTGCAGAGGGTGTAACGGATGAAGAACTCGAAAAC
GTTTTTCAAAGAAGGCTGTACGCCGCGGCCTTTCTGACGGAGAAGAAACGGATGGAAGAAGAGAGAACCACAGCG
ACAGGAGAGTGGCAGGCTGTCGCTAATCCGATGGACAGGACACCCGAACCAAATGAGGAGGACACGGATGAAGAA
GACGCTGTTAGTTCAGATAGCGAAGACGTGGAAGAGGAAGTGGATTCGGAGGAAGAAAGGCGTTTGCAGGACGAG
TGTGACAGGGCATTCGAGAGGCGAGAGCTCGTATTTTACGACCACTTCCGCAAAGAGTACAGGAAGAGGTTGGAG
CGCCTTGACCCAAGGTTTGCAACGCCCGGATTCTGGAAGATGGCGGAGGATGCGTTGAAGATTCACCATCTTGTC
ACTTACGGGGCCGAGGAGTGGATTAGTGCGTATTACGGCCAGCTTAGGGTGCGGGCAATGCCCGCGAGAGAGTAA
Length 675

Gene

Sequence id CopciAB_379923.T0
Sequence >CopciAB_379923.T0
ATGGACTATGCGATGCGCAACTTAGCCTTTGACGACGATATCACGACCATCACGGCGTTTCTGGATTGGGACGAC
GTCGCCATTATACCCTTCATCCTCTGTTCCAAGTACGTGGCCGAGATCCATCCGGATTGGGGAGGTGAAGACTGG
GAGAGAGAAACTGGTGGCTTCAGCTCCATTCAGCCTCCAGCTGCAGAGGGTGTAACGGATGAAGAACTCGAAAAC
GTTTTTCAAAGAAGGCTGTACGCCGCGGCCTTTCTGACGGAGAAGAAACGGATGGAAGAAGAGAGAACCACAGCG
ACAGGAGAGTGGCAGGCTGTCGCTAATCCGATGGACAGGACACCCGAACCAAATGAGGAGGACACGGATGAAGAA
GACGCTGTTAGTTCAGATAGCGAAGACGTGGAAGAGGAAGTGGATTCGGAGGAAGAAAGGCGTTTGCAGGACGAG
TGTGACAGGGCATTCGAGAGGCGAGAGCTCGTATTTTACGACCACTTCCGCAAAGAGTACAGGAAGAGGTTGGAG
CGCCTTGACCCAAGGTTTGCAACGCCCGGATTCTGGAAGATGGCGGAGGATGCGTTGAAGATTCACCATCTTGTC
ACTTACGGGGCCGAGGAGTGGATGTGCAAGGCGGAATGGATCGAATTCCGCGCTGAACAACTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTGGTGGAGCTATAGGCCTTTACTGCGCACAGTAGTGCGTATTACGGCCAGCTTAGGGT
GCGGGCAATGCCCGCGAGAGAGTAA
Length 775