CopciAB_403911
Coprinopsis cinerea A43mutB43mut pab1-1 #326

General data

Systematic name CopciAB_403911 Strain Coprinopsis cinerea Okayama 7
Standard name - Synonyms 403911
Uniprot id Functional description
Location scaffold_5:91068..92487 Strand -
Gene length (nt) 1420 Transcript length (nt) 1304
CDS length (nt) 1074 Protein length (aa) 357

Reciprocal best hits in model fungi

Strain name Gene / Protein name

Orthologs in mushroom models

Strain name Gene / Protein name Pident E-value Bits
Hypsizygus marmoreus strain 51987-8 Hypma_RDB15498 36.6 8.437E-57 202
Agrocybe aegerita Agrae_CAA7263754 35.2 5.16E-49 179
Lentinula edodes W1-26 v1.0 Lentinedodes1_6833 23.9 1.196E-7 53

Expression

Name Summary Attribution Assay type
Carbon metabolism Transcriptional changes along alternative morphogenetic paths of C. cinerea Xie et al. 2020 RNA-Seq
Sample Mean cpm SD cpm Se of mean
sclerotia 1.2055 0.2352 0.1358
oidia 1.9311 0.934 0.5393
vegetative_mycelium 5.2207 0.9052 0.5226
primordia 1.4602 0.4546 0.2625
hyphal_knot 1.1482 0.1931 0.1115
young_fruiting_body 1.861 0.3662 0.2114
Complex carbon sources 1 (long incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control - glucose 1.5868 0.157 0.0906
Wheat bran 2.0876 0.2776 0.1603
Horse manure 1.3365 0.4986 0.2879
Oak leaves 3.0729 1.0574 0.6105
Hay 2.0282 0.6285 0.3628
Corn stalk 1.5386 0.0657 0.0379
Pectine 3.779 0.7961 0.4596
Microcrystalline cellulose 2.7521 0.6381 0.3684
Xylose 1.98 0.5359 0.3094
Cellobiose 1.7176 0.74 0.4272
Lignin 1.9349 1.1255 0.6498
Apple peels 1.6735 0.3434 0.1983
Coprinopsis challenged with bacteria Transcriptional response to Bacillus subtilis and Escherichia coli. Kombrink et al. 2018 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control 1.5169 0.1933 0.1116
Bsubtilis 1.5601 0.1602 0.0925
Ecoli 1.2371 0.3226 0.1863
Early development 1 Time series expression profiling of basidiospore and oidium germination Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
BS 0h 0.0198 0.0188 0.0109
BS 4h 0.1045 0.181 0.1045
BS 8h 0.1309 0.1159 0.0669
BS 12h 0.0997 0.1727 0.0997
Oidia 0 h 0.4453 0.4316 0.2492
Oidia 18 h 0.3094 0.1962 0.1133
Sclerotia 0.7831 1.1331 0.6542
Early development 2 Time series expression profiling of mycelial growth, light induction and fruiting body initiation. Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
DM 12h 2.6573 0.2584 0.1492
DM 36h 1.8048 0.3699 0.2136
DM 60h 2.5775 0.9232 0.533
DM 84h 1.8889 0.6533 0.3772
DM 108h 2.249 0.7835 0.4524
DM 132h 1.9538 0.3405 0.1966
DM 156hAE 0.6979 0.0823 0.0475
ELI1hAE 2.5146 1.8246 1.0534
ELI2hAE 1.3223 0.6099 0.3521
LI2hAE 1.0625 0.3628 0.2094
LI6hAE 1.0516 0.4693 0.271
LI12hAE 1.9806 0.4885 0.2821
LI18hAE 1.0777 0.8407 0.4853
LI 24hAE 0.8939 0.848 0.4896
DM 156hAM 0.9659 0.2632 0.152
ELI1hAM 3.4594 1.9426 1.1215
ELI2hAM 4.541 2.1495 1.241
LI2hAM 3.7896 0.948 0.5473
LI6hAM 1.9251 0.4956 0.2861
LI12hAM 1.9194 0.9385 0.5418
LI18hAM 2.3838 2.8763 1.6607
LI 24hAM 0.1476 0.185 0.1068
LI 24hHK 0.7157 0.5237 0.3023
L/D 6h 0.8561 0.5919 0.3417
L/D 12h 1.4519 0.7412 0.4279
L/D 18h 1.6058 0.8912 0.5145
L/D 24h 2.1952 0.7897 0.456
Fruiting body development RNA-Seq analysis of fruiting body development Krizsan et al. 2019 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Vegetative mycelium 0.6645 0.2155 0.1244
Hyphal knots 1.0222 0.2727 0.1575
Primordium 1 2.352 0.6594 0.3807
Primordium 2 1.9568 0.6651 0.384
Young Fruiting body cap 8.5369 4.4547 2.5719
Younf fruiting body gill 0.9357 0.5033 0.2906
Young fruiting body stipe 4.6309 1.2491 0.7212
Mature fruiting body cap_gill 2.7285 0.4077 0.2354
Mature fruiting body stipe 2.387 0.3224 0.1861
Nitrogen sources (12h incubation) Expression profiling on diverse nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Complete medium - control 2.1228 0.549 0.317
NH4NO3 1.1604 0.3928 0.2268
Proline 1.2565 0.2772 0.1601
Tryptophan 0.7231 0.1874 0.1082
Isoleucin 0.9633 0.3166 0.1828
Arginine 1.2136 0.3652 0.2109
Metionine 1.4929 0.0669 0.0386
NaNO3 1.9336 0.116 0.067
Plant biomass (12h incubation) Expression profiling on diverse plant biomasses as carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 2.1228 0.549 0.317
Citrus peel 3.6005 0.4487 0.2591
Poplar leaves 2.3594 0.0037 0.0022
Typha leaves 1.9623 0.2534 0.1463
Overwintered Salix leaves 2.9543 0.1974 0.114
Reed flowering 2.9372 0.6623 0.3824
Tigernut 2.5937 1.0235 0.5909
Energy cane 1.9027 0.5213 0.301
Guar gum 2.3915 1.9729 1.1391
Apple peels 2.8222 0.2004 0.1157
Cellobiose 2.4889 0.4633 0.2675
Corn stalk 2.4088 0.4696 0.2711
Horse manure 2.2693 0.3143 0.1815
Lignin 1.9487 1.1249 0.6494
Microcrystalline cellulose 1.724 0.732 0.4226
Oak leaves 2.5285 0.3278 0.1893
Pectin esterified 2.2403 0.8942 0.5163
Poplar sawdust 1.5457 0.4526 0.2613
Wheat bran 2.2721 0.3718 0.2147
Chlamydomonas reinhardtii 2.1595 0.2858 0.165
Vertatryl alcohol 0.3526 0.2111 0.1219
Furfural 0.9172 0.9031 0.5214
Autoclaved mycelium 1.3937 0.166 0.0958
Simple and complex carbon and nitrogen sources Expression profiling on diverse complex carbon and nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 0.52 0.3925 0.2266
Ribose 0.935 0.6163 0.3558
Mannose 0.705 0.1877 0.1327
Fructose 0.7674 0.4376 0.2526
Arabinose 0.7788 0.2087 0.1205
Xylose 0.7974 0.2134 0.1232
Galacturonic acid 1.1029 0.5461 0.3153
Rhamnogalacturonan 0.7045 0.156 0.09
Pectin esterified 0.7087 0.5039 0.2909
Polygalacturonic acid 1.2915 0.2154 0.1244
Sodium acetate 0.5385 0.2292 0.1323
No nitrogen 1.5075 0.6467 0.3734
BSA 0.8184 0.1431 0.0826
Glutamine 1.1811 0.2753 0.1589
No phosphate 1.037 0.3947 0.2279
No carbon 1.0191 0.288 0.2036
No sulphur 0.7526 0.2813 0.1624
Simple and complex carbon sources (12h incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 2.1228 0.549 0.317
Amylose 1.3557 0.1043 0.0602
Fucose 1.2636 0.0792 0.0457
Galactose 1.505 0.4608 0.2661
Lactose 1.5887 0.1403 0.081
Maltose 1.0787 0.0669 0.0386
Mannitol 1.2151 0.2393 0.1381
Rhamnose 1.6086 0.1845 0.1065
Sorbitol 1.2772 0.4566 0.2636
Trehalose 1.9146 0.3843 0.2219
Glycerol 1.5684 0.4277 0.2469
Glucuronic acid 0.9912 0.3824 0.2208
Arabinan 1.3368 0.6078 0.3509
Galactan 1.7912 0.2231 0.1288
Galactomannan 1.9921 0.8833 0.51
Glucan 1.8173 0.4817 0.2781
Xylan 2.0377 1.4543 0.8397
Xyloglucan 1.326 0.6699 0.3868
Arabinogalactan 1.1958 0.3417 0.1973
Pectin 1.9315 1.0742 0.6202
Rhamnogalacturonan 1.4194 0.6078 0.3509
Polygalacturonic acid 2.0692 0.3621 0.209
Mannan 1.4339 0.4785 0.2763
Amylopectin 1.7544 0.7725 0.446
Inulin 2.1039 0.2355 0.136
BSA 1.2532 0.5331 0.3078
Starvation induced by water agar transfer Expression profiling on starvation induced by transfer to water agar Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Control 2.5775 0.9232 0.533
2h WAT 2.6135 1.5941 0.9204
4h WAT 2.808 1.5864 0.9159
8h WAT 1.6802 0.8187 0.4727
16h WAT 1.7293 1.1666 0.6735
24h WAT 1.1947 0.6894 0.398
WAT hyphal knot -30h 5.0657 1.4838 0.8566
WAT hyphal knot -22h 3.5725 1.0711 0.6184
WAT hyphal knot -15h 2.3275 0.8589 0.4959
WAT hyphal knot -7.5h 0.821 1.025 0.5918
WAT hyphal knot 1.5581 0.2179 0.1258
WAT hyphal knot +7.5h 0.8572 0.4166 0.2405
Straw time series Time series expression profiling on straw as a carbon source Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 1.4017 0.6497 0.3751
Straw 3h 3.4511 1.391 0.8031
Straw 6h 4.4972 1.6124 0.9309
Straw 12h 3.244 0.3514 0.2029
Straw 24h 2.6078 1.2213 0.7051
Stress conditions 1 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 3.8475 1.491 0.8608
Frost (-20C, 30min) 2.6847 0.7808 0.4508
Heat shock (47C, 2h) 2.0065 0.3076 0.1776
High CO2 1.5573 0.575 0.332
Drought (4% agar, 12h) 1.47 1.3564 0.7831
Oxidative (1mM H2O2, 3h) 0.9399 0.75 0.433
Acidic (pH4, 3h) 1.6299 0.7733 0.4465
Alkaline (pH9, 3h) 3.6756 1.1057 0.6384
Osmotic (sorbitol 2h) 2.4801 0.4606 0.2659
CongoRed (3h) 2.9913 1.1858 0.6846
Cobalt chloride control 1.3627 0.6628 0.3826
Cobalt chloride 2mM 1.9247 1.1623 0.6711
Stress conditions 2 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 2.5342 0.437 0.2523
Cold stimulation 3.129 1.2357 0.7134
Scratched surface 4.1023 1.3915 0.8034
Ca2+, 200mM, 24h 3.275 0.7731 0.4463
Cu2+, 2mM, 6h 2.523 1.4241 0.8222
Voriconazole 5.3897 0.4958 0.2862
Trichoderma interaction, early 2.342 0.9907 0.572
Trichoderma interaction 60h 0.8247 1.4284 0.8247
Cobalt chloride 2mM repeat 3.7186 1.5516 0.8958
Hypoxia 1.0676 0.5337 0.3081
Hypoxia control 0.4813 0.0942 0.0544
Protoplastation control 1.9954 0.363 0.2567
Protoplastation 3.5h 0 0 0
Protoplastation 1.5h 3.2874 1.3014 0.9202

General data

Systematic name -
Protein id CopciAB_403911.T0
Description

Annotation summary

Conserved domains

Analysis Signature accession Signature description InterPro Accession Start End
No records

SignalP

Prediction Start End Score
No records

Transmembrane domains

Domain n Start End Length
No records

InterPro

Accession Description
IPR011009 Protein kinase-like domain superfamily

GO

Go id Term Ontology
No records

KEGG

KEGG Orthology
No records

EggNOG

COG category Description
No records

CAZy

Class Family Subfamily
No records

Transcription factor

Group
No records

Conservation of CopciAB_403911 across fungi.

Arrow shows the origin of gene family containing CopciAB_403911.

Protein

Sequence id CopciAB_403911.T0
Sequence >CopciAB_403911.T0
MASPESLEALRDCNLLRRIQIAGLVKDDPALKVNLVRSQSFPACRANAGREYRPPVPTWGPLPLPPNGDEIELSL
HDEPISEGRVGVVYSADVTLRSNPDGLGSLPTTLCVKVIKPRFSRRAAREAWMHEQLTLSGCSGTATPRYFGFFT
APLRNTTTATRETRKTLNPDDILPWVEARFHDSDHDPYVDSDSELPPDSLNDDSPEFHKYDVGRHRRNSPWYAYE
HDDENPLLSVLLFEVLGPRMFSEPDMKDREKEYHEEAAELVIDIGMTGVRHHDLRTANVLQVPSETLASPNSQIC
ARHGRKHNWRIIDFDSAAKYSITPDDIANNSRDFRRVTTLPVEKIGGYYWWGLELSW
Length 357

Coding

Sequence id CopciAB_403911.T0
Sequence >CopciAB_403911.T0
ATGGCATCGCCGGAATCTCTGGAGGCGTTGAGAGATTGCAACCTCCTCCGCCGGATCCAAATCGCTGGCCTTGTC
AAAGACGATCCAGCGCTAAAGGTGAACCTTGTCCGATCCCAGTCCTTCCCCGCATGTCGTGCCAATGCTGGACGA
GAATATCGCCCTCCCGTTCCGACGTGGGGTCCCTTGCCTCTACCTCCCAACGGTGACGAGATTGAATTGAGCCTC
CACGATGAGCCCATCTCCGAAGGACGCGTCGGGGTTGTATACTCGGCGGACGTGACTTTACGGTCTAATCCGGAT
GGTCTCGGGTCCCTTCCTACGACCCTCTGCGTGAAGGTTATAAAGCCTCGCTTCTCCAGGAGGGCAGCACGCGAA
GCATGGATGCACGAGCAGCTCACTTTGAGCGGCTGCAGTGGCACCGCCACCCCGCGGTATTTTGGCTTTTTCACA
GCGCCTTTGAGGAATACCACTACAGCTACTCGAGAGACTAGAAAGACGCTGAACCCCGACGACATCCTGCCCTGG
GTCGAGGCACGTTTTCATGACTCTGACCACGACCCTTATGTCGACTCCGACTCGGAACTTCCTCCAGACTCGCTC
AACGACGACTCGCCCGAATTTCACAAATATGACGTCGGTCGTCATCGCAGGAACTCTCCCTGGTACGCCTATGAG
CATGACGACGAGAACCCGCTCCTCTCTGTCCTTCTCTTCGAGGTTTTAGGACCGCGCATGTTCAGTGAACCGGAC
ATGAAGGATCGCGAGAAGGAATACCACGAGGAGGCCGCCGAACTGGTGATTGACATTGGGATGACTGGAGTGCGA
CACCATGATCTACGCACCGCGAATGTTCTTCAGGTCCCTTCAGAAACGTTGGCGTCTCCCAACTCACAAATTTGT
GCGCGCCATGGGCGGAAACATAACTGGCGGATCATCGACTTTGACTCTGCGGCGAAGTACTCCATCACGCCCGAC
GACATCGCCAATAATAGCAGAGATTTTCGTCGGGTTACGACATTGCCAGTGGAGAAGATTGGAGGTTACTATTGG
TGGGGACTTGAACTGTCGTGGTGA
Length 1074

Transcript

Sequence id CopciAB_403911.T0
Sequence >CopciAB_403911.T0
ATGACAGCTTCTCCGACCTCGTCCCATCTGTACCAATACGTCCCGTTGTTTCCCTTCTAATTCGATCTTCCTGTC
TGTCATGGCATCGCCGGAATCTCTGGAGGCGTTGAGAGATTGCAACCTCCTCCGCCGGATCCAAATCGCTGGCCT
TGTCAAAGACGATCCAGCGCTAAAGGTGAACCTTGTCCGATCCCAGTCCTTCCCCGCATGTCGTGCCAATGCTGG
ACGAGAATATCGCCCTCCCGTTCCGACGTGGGGTCCCTTGCCTCTACCTCCCAACGGTGACGAGATTGAATTGAG
CCTCCACGATGAGCCCATCTCCGAAGGACGCGTCGGGGTTGTATACTCGGCGGACGTGACTTTACGGTCTAATCC
GGATGGTCTCGGGTCCCTTCCTACGACCCTCTGCGTGAAGGTTATAAAGCCTCGCTTCTCCAGGAGGGCAGCACG
CGAAGCATGGATGCACGAGCAGCTCACTTTGAGCGGCTGCAGTGGCACCGCCACCCCGCGGTATTTTGGCTTTTT
CACAGCGCCTTTGAGGAATACCACTACAGCTACTCGAGAGACTAGAAAGACGCTGAACCCCGACGACATCCTGCC
CTGGGTCGAGGCACGTTTTCATGACTCTGACCACGACCCTTATGTCGACTCCGACTCGGAACTTCCTCCAGACTC
GCTCAACGACGACTCGCCCGAATTTCACAAATATGACGTCGGTCGTCATCGCAGGAACTCTCCCTGGTACGCCTA
TGAGCATGACGACGAGAACCCGCTCCTCTCTGTCCTTCTCTTCGAGGTTTTAGGACCGCGCATGTTCAGTGAACC
GGACATGAAGGATCGCGAGAAGGAATACCACGAGGAGGCCGCCGAACTGGTGATTGACATTGGGATGACTGGAGT
GCGACACCATGATCTACGCACCGCGAATGTTCTTCAGGTCCCTTCAGAAACGTTGGCGTCTCCCAACTCACAAAT
TTGTGCGCGCCATGGGCGGAAACATAACTGGCGGATCATCGACTTTGACTCTGCGGCGAAGTACTCCATCACGCC
CGACGACATCGCCAATAATAGCAGAGATTTTCGTCGGGTTACGACATTGCCAGTGGAGAAGATTGGAGGTTACTA
TTGGTGGGGACTTGAACTGTCGTGGTGATTGATCTTGGAATGCCGCGGCTTGCCTCCTCGTTTACCACCCGTTTC
ACATTTATTGCTGCATCTCATACCATTCATTCTGCTCATACCACTGGATCATACACTGCATTTGCTTGATCCCAT
GACTTTGCTCGTCTGTATGGGCTTCCCGG
Length 1304

Gene

Sequence id CopciAB_403911.T0
Sequence >CopciAB_403911.T0
ATGACAGCTTCTCCGACCTCGTCCCATCTGTACCAATACGTCCCGTTGTTTCCCTTCTAATTCGATCTTCCTGTC
TGTCATGGCATCGCCGGAATCTCTGGAGGCGGTATGTATCCTGGTCATCTTGCTCAAACCCGACCGTTAACCTCA
AATATATTCTAGTTGAGAGATTGCAACCTCCTCCGCCGGATCCAAATCGCTGGCCTTGTCAAAGACGATCCAGCG
CTAAAGGTGAACCTTGTCCGATCCCAGTCCTTCCCCGCATGTCGTGCCAATGCTGGACGAGAATATCGCCCTCCC
GTTCCGACGTGGGGTCCCTTGCCTCTACCTCCCAACGGTGACGAGATTGAATTGAGCCTCCACGATGAGCCCATC
TCCGAAGGACGCGTCGGGGTTGTATACTCGGCGGACGTGACTTTACGGTCTAATCCGGATGGTCTCGGGTCCCTT
CCTACGACCCTCTGCGTGAAGGTTATAAAGCCTCGCTTCTCCAGGAGGGCAGCACGCGAAGCATGGATGCACGAG
CAGCTCACTTTGAGCGGCTGCAGTGGCACCGCCACCCCGCGGTATTTTGGCTTTTTCACAGCGCCTTTGAGGAAT
ACCACTACAGCTACTCGAGAGACTAGAAAGACGCTGAACCCCGACGACATCCTGCCCTGGGTCGAGGCACGTTTT
CATGACTCTGACCACGACCCTTATGTCGACTCCGACTCGGAACTTCCTCCAGACTCGCTCAACGACGACTCGCCC
GAATTTCACAAATATGACGTCGGTCGTCATCGCAGGAACTCTCCCTGGTACGCCTATGAGCATGACGACGAGAAC
CCGCTCCTCTCTGTCCTTCTCTTCGAGGTTTTAGGACCGCGCATGTTCAGTGAACCGGACATGAAGGATCGCGAG
AAGGAATACCACGAGTGAGTGCACGATCCTCTTTGTGTTATCAAACCTCATCTTCTAACATTTTGCTCTAACAGG
GAGGCCGCCGAACTGGTGATTGACATTGGGATGACTGGAGTGCGACACCATGATCTACGCACCGCGAATGTTCTT
CAGGTCCCTTCAGAAACGTTGGCGTCTCCCAACTCACAAATTTGTGCGCGCCATGGGCGGAAACATAACTGGCGG
ATCATCGACTTTGACTCTGCGGCGAAGTACTCCATCACGCCCGACGACATCGCCAATAATAGCAGAGATTTTCGT
CGGGTTACGACATTGCCAGTGGAGAAGATTGGAGGTTACTATTGGTGGGGACTTGAACTGTCGTGGTGATTGATC
TTGGAATGCCGCGGCTTGCCTCCTCGTTTACCACCCGTTTCACATTTATTGCTGCATCTCATACCATTCATTCTG
CTCATACCACTGGATCATACACTGCATTTGCTTGATCCCATGACTTTGCTCGTCTGTATGGGCTTCCCGG
Length 1420