CopciAB_405504
Coprinopsis cinerea A43mutB43mut pab1-1 #326

General data

Systematic name CopciAB_405504 Strain Coprinopsis cinerea Okayama 7
Standard name - Synonyms 405504
Uniprot id Functional description Protein kinase subdomain-containing protein PKL ccin3
Location scaffold_7:358554..359455 Strand -
Gene length (nt) 902 Transcript length (nt) 834
CDS length (nt) 711 Protein length (aa) 236

Reciprocal best hits in model fungi

Strain name Gene / Protein name

Orthologs in mushroom models

Strain name Gene / Protein name Pident E-value Bits
Lentinula edodes B17 Lened_B_1_1_7692 27.1 2.878E-6 47

Expression

Name Summary Attribution Assay type
Carbon metabolism Transcriptional changes along alternative morphogenetic paths of C. cinerea Xie et al. 2020 RNA-Seq
Sample Mean cpm SD cpm Se of mean
sclerotia 0.3144 0.1606 0.0927
oidia 0.8599 0.4366 0.2521
vegetative_mycelium 0.8373 0.4351 0.2512
primordia 0.646 0.1992 0.115
hyphal_knot 0.4329 0.264 0.1524
young_fruiting_body 1.3347 0.5136 0.2965
Complex carbon sources 1 (long incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control - glucose 0.3119 0.0636 0.0367
Wheat bran 0.2869 0.1439 0.0831
Horse manure 0.2706 0.339 0.1957
Oak leaves 0.2828 0.3579 0.2066
Hay 0.2782 0.1734 0.1001
Corn stalk 0.5251 0.4267 0.2464
Pectine 0.2971 0.025 0.0144
Microcrystalline cellulose 0.2906 0.02 0.0115
Xylose 0.0712 0.1233 0.0712
Cellobiose 0.0855 0.0758 0.0437
Lignin 0.0949 0.0738 0.0426
Apple peels 0.38 0.3283 0.1896
Coprinopsis challenged with bacteria Transcriptional response to Bacillus subtilis and Escherichia coli. Kombrink et al. 2018 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control 0.2518 0.0292 0.0168
Bsubtilis 0.6321 0.2042 0.1179
Ecoli 0.4627 0.043 0.0248
Early development 1 Time series expression profiling of basidiospore and oidium germination Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
BS 0h 0.9436 0.3161 0.1825
BS 4h 0.3153 0.1332 0.0769
BS 8h 0.2816 0.1377 0.0795
BS 12h 0.085 0.0769 0.0444
Oidia 0 h 0.1452 0.0422 0.0244
Oidia 18 h 0.1953 0.1923 0.111
Sclerotia 0.0694 0.1202 0.0694
Early development 2 Time series expression profiling of mycelial growth, light induction and fruiting body initiation. Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
DM 12h 0.4361 0.0349 0.0201
DM 36h 0.4071 0.1182 0.0682
DM 60h 0.2743 0.0921 0.0532
DM 84h 0.5212 0.076 0.0439
DM 108h 0.3443 0.2831 0.1635
DM 132h 0.6923 0.24 0.1386
DM 156hAE 0.3947 0.1355 0.0782
ELI1hAE 0.9125 0.6973 0.4026
ELI2hAE 0.6453 0.5357 0.3093
LI2hAE 0.4405 0.2261 0.1306
LI6hAE 0.4364 0.1905 0.11
LI12hAE 0.853 0.7727 0.4461
LI18hAE 0.3036 0.2686 0.1551
LI 24hAE 0.6389 0.7186 0.4149
DM 156hAM 0.354 0.1604 0.0926
ELI1hAM 0.5486 0.1121 0.0647
ELI2hAM 0.4711 0.5071 0.2928
LI2hAM 0.5712 0.3719 0.2147
LI6hAM 0.9709 0.9041 0.522
LI12hAM 0.1056 0.0958 0.0553
LI18hAM 0.4439 0.1472 0.085
LI 24hAM 0.1201 0.1041 0.0601
LI 24hHK 0.6358 0.3337 0.1926
L/D 6h 0.2397 0.1577 0.091
L/D 12h 0.2383 0.4127 0.2383
L/D 18h 0.3154 0.4384 0.2531
L/D 24h 0.4687 0.3387 0.1955
Fruiting body development RNA-Seq analysis of fruiting body development Krizsan et al. 2019 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Vegetative mycelium 0.2729 0.1153 0.0666
Hyphal knots 0.2392 0.2268 0.1309
Primordium 1 0.3127 0.1634 0.0943
Primordium 2 0.3647 0.1627 0.0939
Young Fruiting body cap 0.4677 0.2739 0.1581
Younf fruiting body gill 0.8848 0.6774 0.3911
Young fruiting body stipe 0.4186 0.1746 0.1008
Mature fruiting body cap_gill 0.236 0.1454 0.084
Mature fruiting body stipe 0.1199 0.0989 0.0571
Nitrogen sources (12h incubation) Expression profiling on diverse nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Complete medium - control 0.3932 0.0695 0.0401
NH4NO3 0.172 0.1804 0.1041
Proline 0.3014 0.1873 0.1081
Tryptophan 0.3121 0.1394 0.0805
Isoleucin 0.2073 0.1564 0.0903
Arginine 0.1429 0.1044 0.0603
Metionine 0.1615 0.0484 0.028
NaNO3 0.2766 0.1199 0.0692
Plant biomass (12h incubation) Expression profiling on diverse plant biomasses as carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 0.3932 0.0695 0.0401
Citrus peel 0.2082 0.1809 0.1044
Poplar leaves 0.2939 0.0783 0.0452
Typha leaves 0.3273 0.2397 0.1384
Overwintered Salix leaves 0.2638 0.0978 0.0564
Reed flowering 0.1183 0.1026 0.0593
Tigernut 0.1502 0.1575 0.0909
Energy cane 0.1238 0.1099 0.0634
Guar gum 0.288 0.2598 0.15
Apple peels 0.2578 0.0419 0.0242
Cellobiose 0.4316 0.1915 0.1106
Corn stalk 0.3293 0.2232 0.1288
Horse manure 0.3267 0.4239 0.2447
Lignin 0.5788 0.2095 0.121
Microcrystalline cellulose 0.4063 0.1039 0.06
Oak leaves 0.3423 0.1706 0.0985
Pectin esterified 0.2449 0.3192 0.1843
Poplar sawdust 0.6897 0.4742 0.2738
Wheat bran 0.4109 0.1769 0.1021
Chlamydomonas reinhardtii 0.3014 0.1016 0.0587
Vertatryl alcohol 3.325 0.9781 0.5647
Furfural 0.3521 0.0928 0.0536
Autoclaved mycelium 0.1445 0.0349 0.0201
Simple and complex carbon and nitrogen sources Expression profiling on diverse complex carbon and nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 0.3288 0.1387 0.0801
Ribose 0.4825 0.1376 0.0794
Mannose 0.1875 0.1033 0.0731
Fructose 0.5865 0.3671 0.2119
Arabinose 0.5478 0.296 0.1709
Xylose 0.3168 0.3154 0.1821
Galacturonic acid 0.5214 0.2628 0.1517
Rhamnogalacturonan 0.4765 0.2664 0.1538
Pectin esterified 0.6692 0.3215 0.1856
Polygalacturonic acid 0.5926 0.2013 0.1162
Sodium acetate 0.6337 0.3931 0.2269
No nitrogen 0.2686 0.3785 0.2185
BSA 0.3586 0.1799 0.1039
Glutamine 0.3556 0.176 0.1016
No phosphate 0.4156 0.2113 0.122
No carbon 0.4099 0.0854 0.0604
No sulphur 0.2347 0.0999 0.0576
Simple and complex carbon sources (12h incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 0.3932 0.0695 0.0401
Amylose 0.2547 0.1092 0.0631
Fucose 0.3072 0.2893 0.167
Galactose 0.189 0.0952 0.055
Lactose 0.2669 0.2463 0.1422
Maltose 0.3671 0.2269 0.131
Mannitol 0.3159 0.1056 0.0609
Rhamnose 0.3909 0.2086 0.1204
Sorbitol 0.313 0.2426 0.14
Trehalose 0.409 0.1713 0.0989
Glycerol 0.2028 0.0375 0.0216
Glucuronic acid 0.2775 0.1481 0.0855
Arabinan 0.3089 0.0935 0.054
Galactan 0.3515 0.1742 0.1006
Galactomannan 0.2272 0.2462 0.1422
Glucan 0.4141 0.1538 0.0888
Xylan 0.2896 0.1601 0.0925
Xyloglucan 0.3171 0.2827 0.1632
Arabinogalactan 0.2255 0.0865 0.05
Pectin 0.8817 0.2024 0.1169
Rhamnogalacturonan 0.2612 0.1001 0.0578
Polygalacturonic acid 0.1981 0.1316 0.076
Mannan 0.4517 0.3532 0.2039
Amylopectin 0.1996 0.1277 0.0737
Inulin 0.1724 0.1338 0.0773
BSA 0.137 0.0913 0.0527
Starvation induced by water agar transfer Expression profiling on starvation induced by transfer to water agar Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Control 0.2743 0.0921 0.0532
2h WAT 0.9138 0.7939 0.4584
4h WAT 0.4144 0.2834 0.1636
8h WAT 0.4989 0.2163 0.1249
16h WAT 0.7896 0.424 0.2448
24h WAT 0.4422 0.3776 0.218
WAT hyphal knot -30h 0.4776 0.2752 0.1589
WAT hyphal knot -22h 0.3639 0.4274 0.2467
WAT hyphal knot -15h 0.3369 0.3241 0.1871
WAT hyphal knot -7.5h 0.0323 0.056 0.0323
WAT hyphal knot 0.6151 0.2906 0.1678
WAT hyphal knot +7.5h 0.5016 0.222 0.1282
Straw time series Time series expression profiling on straw as a carbon source Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 0.3826 0.3313 0.1913
Straw 3h 0.328 0.2857 0.165
Straw 6h 0.2416 0.3333 0.1924
Straw 12h 0.2405 0.1506 0.0869
Straw 24h 0.4034 0.3766 0.2174
Stress conditions 1 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 0.2519 0.219 0.1265
Frost (-20C, 30min) 0.5739 0.0958 0.0553
Heat shock (47C, 2h) 0.8679 0.8206 0.4738
High CO2 0.3634 0.2995 0.1729
Drought (4% agar, 12h) 0.3646 0.181 0.1045
Oxidative (1mM H2O2, 3h) 0.99 0.4864 0.2808
Acidic (pH4, 3h) 0.1805 0.3126 0.1805
Alkaline (pH9, 3h) 0.4373 0.2484 0.1434
Osmotic (sorbitol 2h) 0.6226 0.2203 0.1272
CongoRed (3h) 0.365 0.3168 0.1829
Cobalt chloride control 0.2905 0.0358 0.0206
Cobalt chloride 2mM 0.3399 0.3663 0.2115
Stress conditions 2 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 0.2978 0.2972 0.1716
Cold stimulation 0.6526 0.5835 0.3369
Scratched surface 0.6759 0.2088 0.1206
Ca2+, 200mM, 24h 0.5972 0.3947 0.2279
Cu2+, 2mM, 6h 0.5534 0.6061 0.3499
Voriconazole 1.05 1.052 0.6074
Trichoderma interaction, early 0.4628 0.0759 0.0438
Trichoderma interaction 60h 1.41 2.4422 1.41
Cobalt chloride 2mM repeat 0.4484 0.5619 0.3244
Hypoxia 0.3672 0.4383 0.2531
Hypoxia control 0.1961 0.3396 0.1961
Protoplastation control 0.8321 0.0527 0.0373
Protoplastation 3.5h 0.0969 0.1371 0.0969
Protoplastation 1.5h 0 0 0

General data

Systematic name -
Protein id CopciAB_405504.T0
Description Protein kinase subdomain-containing protein PKL ccin3

Annotation summary

Conserved domains

Analysis Signature accession Signature description InterPro Accession Start End
No records

SignalP

Prediction Start End Score
No records

Transmembrane domains

Domain n Start End Length
No records

InterPro

Accession Description
No records

GO

Go id Term Ontology
No records

KEGG

KEGG Orthology
No records

EggNOG

COG category Description
G Protein kinase subdomain-containing protein PKL ccin3

CAZy

Class Family Subfamily
No records

Transcription factor

Group
No records

Conservation of CopciAB_405504 across fungi.

Arrow shows the origin of gene family containing CopciAB_405504.

Protein

Sequence id CopciAB_405504.T0
Sequence >CopciAB_405504.T0
MFSSLIIHDCGTIDGEPISVTLRASPSFPCAVWFQQDWQQPVPATWVAKEISGFDGTLEVKLVERISEGRIGVAY
IAQVLSATQQGTDIQATIPPTLCLKFAKPEFSRSLARLGDAWFYEQMESLQGISVPTCFGFFASTAEDLEKRANP
HESNLDVSPARIKFEIEPWKRRKVLFEDTDRIPRNIDQYPSADWQSDDRGTSGKGMSRIIRLSLCLFSSCLVRLA
MDGELILIRKP
Length 236

Coding

Sequence id CopciAB_405504.T0
Sequence >CopciAB_405504.T0
ATGTTCTCGAGCCTAATCATTCACGACTGCGGTACTATCGACGGAGAGCCCATATCAGTTACACTCAGAGCTTCA
CCTTCTTTCCCCTGCGCAGTCTGGTTCCAGCAGGACTGGCAGCAGCCAGTGCCTGCCACATGGGTAGCAAAGGAA
ATCTCTGGGTTCGACGGGACCCTCGAGGTTAAGCTCGTAGAGCGCATCTCTGAGGGTCGCATTGGTGTAGCTTAC
ATTGCGCAGGTTCTCTCCGCAACTCAACAAGGCACAGATATTCAGGCGACAATACCACCCACCCTGTGCCTGAAA
TTCGCCAAGCCCGAGTTCAGTCGCAGTCTGGCACGACTCGGAGATGCCTGGTTCTACGAGCAGATGGAGTCTCTG
CAGGGTATTTCCGTGCCCACTTGCTTCGGTTTCTTCGCCTCCACTGCGGAAGACCTAGAGAAACGGGCCAATCCA
CACGAATCCAACCTCGACGTCAGCCCCGCCCGAATTAAGTTTGAAATCGAACCTTGGAAACGCCGGAAGGTTCTG
TTCGAAGACACGGACCGTATCCCTCGTAACATCGACCAGTATCCTTCAGCCGACTGGCAGTCCGATGACCGTGGT
ACGAGTGGAAAAGGGATGTCCAGGATAATCCGACTTTCTCTGTGCTTGTTCTCGAGTTGCTTGGTGAGGCTTGCG
ATGGATGGAGAACTAATTCTGATAAGAAAGCCATAA
Length 711

Transcript

Sequence id CopciAB_405504.T0
Sequence >CopciAB_405504.T0
GGCACTTTACTCATCGACCACTTCGTACTAGACACAGCATATGTTCTCGAGCCTAATCATTCACGACTGCGGTAC
TATCGACGGAGAGCCCATATCAGTTACACTCAGAGCTTCACCTTCTTTCCCCTGCGCAGTCTGGTTCCAGCAGGA
CTGGCAGCAGCCAGTGCCTGCCACATGGGTAGCAAAGGAAATCTCTGGGTTCGACGGGACCCTCGAGGTTAAGCT
CGTAGAGCGCATCTCTGAGGGTCGCATTGGTGTAGCTTACATTGCGCAGGTTCTCTCCGCAACTCAACAAGGCAC
AGATATTCAGGCGACAATACCACCCACCCTGTGCCTGAAATTCGCCAAGCCCGAGTTCAGTCGCAGTCTGGCACG
ACTCGGAGATGCCTGGTTCTACGAGCAGATGGAGTCTCTGCAGGGTATTTCCGTGCCCACTTGCTTCGGTTTCTT
CGCCTCCACTGCGGAAGACCTAGAGAAACGGGCCAATCCACACGAATCCAACCTCGACGTCAGCCCCGCCCGAAT
TAAGTTTGAAATCGAACCTTGGAAACGCCGGAAGGTTCTGTTCGAAGACACGGACCGTATCCCTCGTAACATCGA
CCAGTATCCTTCAGCCGACTGGCAGTCCGATGACCGTGGTACGAGTGGAAAAGGGATGTCCAGGATAATCCGACT
TTCTCTGTGCTTGTTCTCGAGTTGCTTGGTGAGGCTTGCGATGGATGGAGAACTAATTCTGATAAGAAAGCCATA
AAGGATGTTCTAGACGATCTACTTGAACTCGGCGTCATTCACGCCAACCTCTCTCCTTGGAATGTATTGAAGTAT
ATGCCTCCC
Length 834

Gene

Sequence id CopciAB_405504.T0
Sequence >CopciAB_405504.T0
GGCACTTTACTCATCGACCACTTCGTACTAGACACAGCATATGTTCTCGAGCCTAATCATTCACGACTGCGGTAC
TATCGACGGAGAGCCCATATCAGTTACACTCAGAGCTTCACCTTCTTTCCCCTGCGCAGTCTGGTTCCAGCAGGA
CTGGCAGCAGCCAGTGCCTGCCACATGGGTAGCAAAGGAAATCTCTGGGTTCGACGGGACCCTCGAGGTTAAGCT
CGTAGAGCGCATCTCTGAGGGTCGCATTGGTGTAGCTTACATTGCGCAGGTTCTCTCCGCAACTCAACAAGGCAC
AGATATTCAGGCGACAATACCACCCACCCTGTGCCTGAAATTCGCCAAGCCCGAGTTCAGTCGCAGTCTGGCACG
ACTCGGAGATGCCTGGTTCTACGAGCAGATGGAGTCTCTGCAGGGTATTTCCGTGCCCACTTGCTTCGGTTTCTT
CGCCTCCACTGCGGAAGACCTAGAGAAACGGGCCAATCCACACGAATCCAACCTCGACGTCAGCCCCGCCCGAAT
TAAGTTTGAAATCGAACCTTGGAAACGCCGGAAGGTTCTGTTCGAAGACACGGACCGTATCCCTCGTAACATCGA
CCAGTATCCTTCAGCCGACTGGCAGTCCGATGACCGTGGTACGAGTGGAAAAGGGATGTCCAGGATAATCCGACT
TTCTCTGTGCTTGTTCTCGAGTTGCTTGGTGAGGCTTGCGATGGATGGAGAACTAATTCTGATAAGTGAGTACAG
GGCTTATGTCTTCATTTACTATTCGCGAGAAGTACTCAAAGGTTAATTTGGAACCTAGGAAAGCCATAAAGGATG
TTCTAGACGATCTACTTGAACTCGGCGTCATTCACGCCAACCTCTCTCCTTGGAATGTATTGAAGTATATGCCTC
CC
Length 902