Systematic name | CopciAB_414471 | Strain | Coprinopsis cinerea Okayama 7 |
---|---|---|---|
Standard name | exgA | Synonyms | 414471 |
Uniprot id | Functional description | Belongs to the glycosyl hydrolase 5 (cellulase A) family | |
Location | scaffold_1:1483390..1485177 | Strand | + |
Gene length (nt) | 1788 | Transcript length (nt) | 1426 |
CDS length (nt) | 1269 | Protein length (aa) | 422 |
Strain name | Gene / Protein name |
---|---|
Candida albicans | XOG1 |
Aspergillus niger | exgA |
Aspergillus nidulans | AN4052_exgC |
Saccharomyces cerevisiae | YLR300W_EXG1 |
Schizosaccharomyces pombe | exg1 |
Strain name | Gene / Protein name | Pident | E-value | Bits |
---|---|---|---|---|
Hypsizygus marmoreus strain 51987-8 | Hypma_RDB29660 | 69.7 | 2.797E-210 | 650 |
Agrocybe aegerita | Agrae_CAA7264788 | 68.9 | 1.224E-209 | 648 |
Pleurotus ostreatus PC15 | PleosPC15_2_1088664 | 67.3 | 3.488E-204 | 632 |
Pleurotus ostreatus PC9 | PleosPC9_1_115916 | 67.3 | 3.414E-204 | 632 |
Pleurotus eryngii ATCC 90797 | Pleery1_1500459 | 68.7 | 1.089E-201 | 625 |
Schizophyllum commune H4-8 | Schco3_73246 | 62.7 | 4.258E-187 | 583 |
Auricularia subglabra | Aurde3_1_1235571 | 58.5 | 4.617E-172 | 540 |
Name | Summary | Attribution | Assay type | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Carbon metabolism | Transcriptional changes along alternative morphogenetic paths of C. cinerea | Xie et al. 2020 | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Complex carbon sources 1 (long incubation) | Expression profiling on diverse complex carbon sources. | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Coprinopsis challenged with bacteria | Transcriptional response to Bacillus subtilis and Escherichia coli. | Kombrink et al. 2018 | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Early development 1 | Time series expression profiling of basidiospore and oidium germination | Hegedus et al. | QuantSeq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Early development 2 | Time series expression profiling of mycelial growth, light induction and fruiting body initiation. | Hegedus et al. | QuantSeq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Fruiting body development | RNA-Seq analysis of fruiting body development | Krizsan et al. 2019 | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Nitrogen sources (12h incubation) | Expression profiling on diverse nitrogen sources. | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Plant biomass (12h incubation) | Expression profiling on diverse plant biomasses as carbon sources. | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Simple and complex carbon and nitrogen sources | Expression profiling on diverse complex carbon and nitrogen sources. | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Simple and complex carbon sources (12h incubation) | Expression profiling on diverse complex carbon sources. | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Starvation induced by water agar transfer | Expression profiling on starvation induced by transfer to water agar | Hegedus et al. | QuantSeq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Straw time series | Time series expression profiling on straw as a carbon source | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Stress conditions 1 | Expression profiling under various stress conditions | Hegedus et al. | QuantSeq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Stress conditions 2 | Expression profiling under various stress conditions | Hegedus et al. | QuantSeq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
Systematic name | exgA |
---|---|
Protein id | CopciAB_414471.T0 |
Description | Belongs to the glycosyl hydrolase 5 (cellulase A) family |
Analysis | Signature accession | Signature description | InterPro Accession | Start | End |
---|---|---|---|---|---|
Pfam | PF00150 | Cellulase (glycosyl hydrolase family 5) | IPR001547 | 82 | 317 |
Prediction | Start | End | Score |
---|---|---|---|
SP(Sec/SPI) | 1 | 25 | 0.9685 |
Domain n | Start | End | Length |
---|---|---|---|
1 | 7 | 29 | 22 |
Accession | Description |
---|---|
IPR001547 | Glycoside hydrolase, family 5 |
IPR017853 | Glycoside hydrolase superfamily |
Go id | Term | Ontology |
---|---|---|
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | MF |
GO:0071704 | organic substance metabolic process | BP |
KEGG Orthology |
---|
K01210 |
COG category | Description |
---|---|
G | Belongs to the glycosyl hydrolase 5 (cellulase A) family |
Class | Family | Subfamily |
---|---|---|
GH | GH5 | GH5_9 |
Group |
---|
No records |
Arrow shows the origin of gene family containing CopciAB_414471.
Sequence id | CopciAB_414471.T0 |
---|---|
Sequence |
>CopciAB_414471.T0 MRRTLVTLLAAVLSLVSLAPMASFAYTWGFPYESQKIRGVNLGGWLVTEPWITPSLFDNTGDPRIIDEWTFGLYQ DKDKAYTALKQHWETWITEKDFEDIAAAGLNHVRLPIGYWAFEVAPDEPYIQGQLEYLDRAITWAQKYNLKVIID LHGAPGSQNGFDNSGQKMDYPTWHTKQSNVDRTNAVIQRIADLYKDRTGVVPAIAPLNEPAGFFGADVLSVTRQY WLDSYGNIRYPYGNDATSNTVVIIHDAFEPTANWKDFMPYPQYEGVILDTHIYQVFNNDQVAWSEDQHIRGICDR ASAMTDSGMWTVVGEWSPARTDCTKYLNGRGIGNRYEGTYPGSTRVGSCEGLTGDASSFSASYKTFLRKFWEAQT ITYEKGQGWIQWTWKAEQADDWSYQAGLENGWIPKNPTDRQYPNICD |
Length | 422 |
Sequence id | CopciAB_414471.T0 |
---|---|
Sequence |
>CopciAB_414471.T0 ATGCGTCGAACATTAGTCACTCTTTTAGCCGCCGTTCTTTCTCTCGTTTCCCTGGCCCCCATGGCGTCGTTCGCC TACACCTGGGGGTTCCCGTATGAATCTCAGAAGATCCGGGGCGTCAACCTGGGTGGCTGGCTTGTCACTGAGCCC TGGATCACGCCTTCGCTTTTCGACAATACCGGTGACCCACGTATTATCGACGAATGGACTTTCGGTCTTTACCAG GATAAGGACAAGGCGTACACCGCGCTCAAGCAGCACTGGGAAACTTGGATCACTGAGAAAGATTTCGAAGATATC GCTGCCGCTGGGCTGAATCACGTCCGCCTCCCCATCGGCTACTGGGCGTTCGAGGTCGCGCCGGATGAGCCGTAC ATCCAAGGTCAACTTGAATACCTCGACCGAGCGATTACTTGGGCCCAGAAATATAACTTGAAGGTCATCATTGAC CTGCATGGCGCGCCTGGCAGTCAGAATGGCTTCGACAACTCTGGCCAGAAGATGGACTACCCTACCTGGCATACA AAGCAGAGCAACGTCGACAGGACCAATGCTGTCATCCAACGAATTGCAGACTTGTACAAAGATAGAACTGGAGTT GTCCCAGCTATCGCACCTCTCAACGAGCCTGCTGGTTTCTTCGGAGCAGACGTTCTGAGTGTTACCCGCCAATAC TGGCTCGACAGCTACGGTAACATTCGTTACCCTTACGGCAACGACGCGACGAGCAACACCGTCGTCATCATCCAC GACGCTTTTGAGCCCACTGCAAACTGGAAGGACTTCATGCCCTATCCTCAGTACGAAGGTGTCATCCTTGATACC CATATCTACCAGGTCTTCAACAACGATCAAGTTGCTTGGTCGGAAGATCAGCACATCCGCGGTATCTGCGACCGT GCCAGCGCCATGACGGATTCCGGGATGTGGACTGTCGTCGGCGAATGGTCTCCAGCAAGGACCGATTGCACCAAA TATCTGAATGGAAGAGGCATTGGCAACCGCTATGAGGGTACCTACCCTGGATCGACCCGCGTCGGCAGCTGCGAA GGGCTTACCGGAGATGCTTCCTCCTTCAGCGCAAGTTACAAGACGTTCTTGAGGAAGTTCTGGGAGGCACAGACT ATCACGTACGAGAAGGGTCAGGGTTGGATCCAATGGACGTGGAAGGCCGAGCAGGCAGACGACTGGTCTTACCAG GCCGGTCTAGAGAATGGATGGATTCCTAAGAATCCTACTGACCGACAATACCCTAATATCTGCGATTAG |
Length | 1269 |
Sequence id | CopciAB_414471.T0 |
---|---|
Sequence |
>CopciAB_414471.T0 GCTTTCCCCCCTCGCCTCACTTCACGCTCTTTACCAGCTATCGACTGCCGTCATGCGTCGAACATTAGTCACTCT TTTAGCCGCCGTTCTTTCTCTCGTTTCCCTGGCCCCCATGGCGTCGTTCGCCTACACCTGGGGGTTCCCGTATGA ATCTCAGAAGATCCGGGGCGTCAACCTGGGTGGCTGGCTTGTCACTGAGCCCTGGATCACGCCTTCGCTTTTCGA CAATACCGGTGACCCACGTATTATCGACGAATGGACTTTCGGTCTTTACCAGGATAAGGACAAGGCGTACACCGC GCTCAAGCAGCACTGGGAAACTTGGATCACTGAGAAAGATTTCGAAGATATCGCTGCCGCTGGGCTGAATCACGT CCGCCTCCCCATCGGCTACTGGGCGTTCGAGGTCGCGCCGGATGAGCCGTACATCCAAGGTCAACTTGAATACCT CGACCGAGCGATTACTTGGGCCCAGAAATATAACTTGAAGGTCATCATTGACCTGCATGGCGCGCCTGGCAGTCA GAATGGCTTCGACAACTCTGGCCAGAAGATGGACTACCCTACCTGGCATACAAAGCAGAGCAACGTCGACAGGAC CAATGCTGTCATCCAACGAATTGCAGACTTGTACAAAGATAGAACTGGAGTTGTCCCAGCTATCGCACCTCTCAA CGAGCCTGCTGGTTTCTTCGGAGCAGACGTTCTGAGTGTTACCCGCCAATACTGGCTCGACAGCTACGGTAACAT TCGTTACCCTTACGGCAACGACGCGACGAGCAACACCGTCGTCATCATCCACGACGCTTTTGAGCCCACTGCAAA CTGGAAGGACTTCATGCCCTATCCTCAGTACGAAGGTGTCATCCTTGATACCCATATCTACCAGGTCTTCAACAA CGATCAAGTTGCTTGGTCGGAAGATCAGCACATCCGCGGTATCTGCGACCGTGCCAGCGCCATGACGGATTCCGG GATGTGGACTGTCGTCGGCGAATGGTCTCCAGCAAGGACCGATTGCACCAAATATCTGAATGGAAGAGGCATTGG CAACCGCTATGAGGGTACCTACCCTGGATCGACCCGCGTCGGCAGCTGCGAAGGGCTTACCGGAGATGCTTCCTC CTTCAGCGCAAGTTACAAGACGTTCTTGAGGAAGTTCTGGGAGGCACAGACTATCACGTACGAGAAGGGTCAGGG TTGGATCCAATGGACGTGGAAGGCCGAGCAGGCAGACGACTGGTCTTACCAGGCCGGTCTAGAGAATGGATGGAT TCCTAAGAATCCTACTGACCGACAATACCCTAATATCTGCGATTAGGATCTGAATAGATACCCCCTACACGCTAT ATATCTAAACCATACTCTAATGTACGTAAAGTCCTGGTAAAGGGACGTCCGTGAATTGATTCTCTGTTCTAATTT C |
Length | 1426 |
Sequence id | CopciAB_414471.T0 |
---|---|
Sequence |
>CopciAB_414471.T0 GCTTTCCCCCCTCGCCTCACTTCACGCTCTTTACCAGCTATCGACTGCCGTCATGCGTCGAACATTAGTCACTCT TTTAGCCGCCGTTCTTTCTCTCGTTTCCCTGGCCCCCATGGCGTCGTTCGCCTACACCTGGGGGTTCCCGTATGA ATCTCAGAAGATCCGGGGCGTCAACCTGGGTGGCTGGCTTGTCACTGAGGTGCGCAACTCGAGAATGCCTCTCCT GAGTTTCAAGGCTTTCGTTGACACTGGGTCCTTTTCCAGCCCTGGATCACGCCTTCGCTTTTCGACAATACCGGT GACCCACGTATTATCGACGAATGGACTTTCGGTCTTTACCAGGATAAGGACAAGGCGTACACCGCGCTCAAGCAG CACTGGGAAACTTGGATCACTGAGAAAGATTTCGAAGATATCGCTGCCGCTGGGTGAGCCCATCTTGCGCGTTGA GTTATCATGGTAAAATCTTACTGACGGTCTTTCTCAGGCTGAATCACGTCCGCCTCCCCATCGGCTACTGGGCGT TCGAGGTCGCGCCGGATGAGCCGTACATCCAAGGTCAACTTGAATACCTCGACCGAGCGATTACTTGGGCCCAGA AATATAACTTGAAGGTCATCATTGACCTGCATGGTGCGTCACATAGCCTCCACCCTTTGACCACCAGTTCCCAAC ATTATGTCCTGCGTAGGCGCGCCTGGCAGTCAGAATGGCTTCGACAACTCTGGCCAGAAGATGGACTACCCGTAC GTCTACCTCAGATCCCTGCCATCGCGTCGCATGCATATCTGACAATCGCTTTTACAGTACCTGGCATACAAAGCA GAGCAACGTCGACAGGACCAATGCTGTCATCCAACGAATTGCAGACTTGTACAAAGATAGAACTGGAGTTGTCCC AGCTATCGCACCTCTCAACGAGTACGTACCACGGTAGCTCGTGACATCTTGAGCGTAGTGATGAACGTTGGTGGC AGGCCTGCTGGTTTCTTCGGAGCAGACGTTCTGAGTGTTACCCGCCAATACTGGCTCGACAGCTACGGTAACATT CGTTACCCTTACGGCAACGACGCGACGAGCAACACCGTCGTCATCATCCACGACGCTTTTGAGCCCACTGCAAAC TGGAAGGACTTCATGCCCTATCCTCAGTACGAAGGTGTCATCCTTGATACCCATATCTACCAGGTCTTCAACAAC GATGTGAGTTAGCCCTGCTCCATGAAGACCTTTTCAAAAGTCCGTTAGTATTGACGGTTCGAGCAGCAAGTTGCT TGGTCGGAAGATCAGCACATCCGCGGTATCTGCGACCGTGCCAGCGCCATGACGGATTCCGGGATGTGGACTGTC GTCGGCGAATGGTCTCCAGCAAGGACCGATTGCACCAAATATCTGAATGGAAGAGGCATTGGCAACCGCTATGAG GGTACCTACCCTGGATCGACCCGCGTCGGCAGCTGCGAAGGGCTTACCGGAGATGCTTCCTCCTTCAGCGCAAGT TACAAGACGTTCTTGAGGAAGTTCTGGGAGGCACAGACTATCACGTACGAGAAGGGTCAGGGTTGGATCCAATGG ACGTGGAAGGCCGAGCAGGCAGACGACTGGTCTTACCAGGCCGGTCTAGAGAATGGATGGATTCCTAAGAATCCT ACTGACCGACAATACCCTAATATCTGCGATTAGGATCTGAATAGATACCCCCTACACGCTATATATCTAAACCAT ACTCTAATGTACGTAAAGTCCTGGTAAAGGGACGTCCGTGAATTGATTCTCTGTTCTAATTTC |
Length | 1788 |