CopciAB_430687
Coprinopsis cinerea A43mutB43mut pab1-1 #326

General data

Systematic name CopciAB_430687 Strain Coprinopsis cinerea Okayama 7
Standard name - Synonyms 430687
Uniprot id Functional description Protein kinase subdomain-containing protein PKL ccin3
Location scaffold_9:177838..178873 Strand -
Gene length (nt) 1036 Transcript length (nt) 978
CDS length (nt) 978 Protein length (aa) 325

Reciprocal best hits in model fungi

Strain name Gene / Protein name

Orthologs in mushroom models

Strain name Gene / Protein name Pident E-value Bits
0

Expression

Name Summary Attribution Assay type
Carbon metabolism Transcriptional changes along alternative morphogenetic paths of C. cinerea Xie et al. 2020 RNA-Seq
Sample Mean cpm SD cpm Se of mean
sclerotia 0.1833 0.1941 0.112
oidia 0.0437 0.038 0.0219
vegetative_mycelium 0 0 0
primordia 0.1901 0.0793 0.0458
hyphal_knot 0 0 0
young_fruiting_body 0.1329 0.0039 0.0023
Complex carbon sources 1 (long incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control - glucose 0.6729 0.4531 0.2616
Wheat bran 0.1847 0.2468 0.1425
Horse manure 0.0805 0.1395 0.0805
Oak leaves 0.0181 0.0314 0.0181
Hay 0.0817 0.0759 0.0438
Corn stalk 0 0 0
Pectine 0.1187 0.0252 0.0145
Microcrystalline cellulose 0 0 0
Xylose 0.8301 0.2335 0.1348
Cellobiose 1.7477 0.5498 0.3174
Lignin 0.0349 0.0312 0.018
Apple peels 0.0177 0.0307 0.0177
Coprinopsis challenged with bacteria Transcriptional response to Bacillus subtilis and Escherichia coli. Kombrink et al. 2018 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control 0.0629 0.027 0.0156
Bsubtilis 0.0349 0.0303 0.0175
Ecoli 0.0352 0.0609 0.0352
Early development 1 Time series expression profiling of basidiospore and oidium germination Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
BS 0h 1.7458 0.5646 0.326
BS 4h 0.3818 0.1206 0.0697
BS 8h 0.049 0.0848 0.049
BS 12h 0 0 0
Oidia 0 h 0.4658 0.2596 0.1499
Oidia 18 h 0.0276 0.0479 0.0276
Sclerotia 0 0 0
Early development 2 Time series expression profiling of mycelial growth, light induction and fruiting body initiation. Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
DM 12h 0.0252 0.0436 0.0252
DM 36h 0 0 0
DM 60h 0.0281 0.0487 0.0281
DM 84h 0.0585 0.0507 0.0293
DM 108h 0.0409 0.0377 0.0218
DM 132h 0.0923 0.0923 0.0533
DM 156hAE 0.1532 0.132 0.0762
ELI1hAE 0.1962 0.3043 0.1757
ELI2hAE 0 0 0
LI2hAE 0 0 0
LI6hAE 0.1186 0.1207 0.0697
LI12hAE 0 0 0
LI18hAE 0.0309 0.0535 0.0309
LI 24hAE 0.1763 0.3053 0.1763
DM 156hAM 0 0 0
ELI1hAM 0 0 0
ELI2hAM 0 0 0
LI2hAM 0.0359 0.0623 0.0359
LI6hAM 0.0038 0.0065 0.0038
LI12hAM 0.0068 0.0119 0.0068
LI18hAM 0.0069 0.012 0.0069
LI 24hAM 0.0172 0.0297 0.0172
LI 24hHK 0 0 0
L/D 6h 0.1076 0.0932 0.0538
L/D 12h 0.2911 0.2573 0.1486
L/D 18h 0 0 0
L/D 24h 0.0429 0.0744 0.0429
Fruiting body development RNA-Seq analysis of fruiting body development Krizsan et al. 2019 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Vegetative mycelium 0.1884 0.1593 0.092
Hyphal knots 0.0115 0.0199 0.0115
Primordium 1 0.1498 0.0916 0.0529
Primordium 2 0.0615 0.046 0.0266
Young Fruiting body cap 0.5442 0.1486 0.0858
Younf fruiting body gill 0.1219 0.0221 0.0128
Young fruiting body stipe 0.2164 0.0459 0.0265
Mature fruiting body cap_gill 0.2888 0.1479 0.0854
Mature fruiting body stipe 0.2139 0.1492 0.0861
Nitrogen sources (12h incubation) Expression profiling on diverse nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Complete medium - control 0.038 0.0329 0.019
NH4NO3 0.1105 0.0752 0.0434
Proline 0.0783 0.0693 0.04
Tryptophan 0.0154 0.0267 0.0154
Isoleucin 0.1256 0.0719 0.0415
Arginine 0.0525 0.0516 0.0298
Metionine 0.1107 0.0996 0.0575
NaNO3 0.082 0.0713 0.0412
Plant biomass (12h incubation) Expression profiling on diverse plant biomasses as carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 0.038 0.0329 0.019
Citrus peel 0 0 0
Poplar leaves 0.0921 0.1159 0.0669
Typha leaves 0.0782 0.0948 0.0547
Overwintered Salix leaves 0.0371 0.0643 0.0371
Reed flowering 0 0 0
Tigernut 0.0262 0.0453 0.0262
Energy cane 0.067 0.0745 0.043
Guar gum 0.089 0.0854 0.0493
Apple peels 0.0335 0.0581 0.0335
Cellobiose 0.1324 0.1339 0.0773
Corn stalk 0.2384 0.2237 0.1292
Horse manure 0.0617 0.1069 0.0617
Lignin 0.0483 0.0836 0.0483
Microcrystalline cellulose 0.048 0.047 0.0272
Oak leaves 0.0746 0.0901 0.052
Pectin esterified 0.0521 0.0521 0.0301
Poplar sawdust 0.0148 0.0257 0.0148
Wheat bran 0.269 0.3385 0.1954
Chlamydomonas reinhardtii 0.0333 0.0289 0.0167
Vertatryl alcohol 0.0392 0.0679 0.0392
Furfural 0 0 0
Autoclaved mycelium 0.0182 0.0315 0.0182
Simple and complex carbon and nitrogen sources Expression profiling on diverse complex carbon and nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 0.2342 0.1686 0.0973
Ribose 0.0273 0.0474 0.0273
Mannose 0.1331 0.1356 0.0959
Fructose 0.2959 0.1793 0.1035
Arabinose 0.1679 0.0796 0.0459
Xylose 0.0971 0.0856 0.0494
Galacturonic acid 0.1113 0.1024 0.0591
Rhamnogalacturonan 0.0696 0.066 0.0381
Pectin esterified 0.0769 0.0682 0.0394
Polygalacturonic acid 0.141 0.0915 0.0529
Sodium acetate 0.0521 0.0473 0.0273
No nitrogen 0.2684 0.1705 0.0984
BSA 0.1543 0.0539 0.0311
Glutamine 0.2332 0.4039 0.2332
No phosphate 0.2152 0.2308 0.1333
No carbon 0.1927 0.1394 0.0986
No sulphur 0.4767 0.4808 0.2776
Simple and complex carbon sources (12h incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 0.038 0.0329 0.019
Amylose 0.1108 0.0676 0.039
Fucose 0.1475 0.0875 0.0505
Galactose 0.098 0.0997 0.0576
Lactose 0.0865 0.1018 0.0588
Maltose 0.0353 0.0611 0.0353
Mannitol 0.0296 0.0257 0.0149
Rhamnose 0.0816 0.0602 0.0347
Sorbitol 0.1602 0.1638 0.0946
Trehalose 0 0 0
Glycerol 0.1233 0.1088 0.0628
Glucuronic acid 0.103 0.1442 0.0832
Arabinan 0.1756 0.0763 0.044
Galactan 0.0364 0.0315 0.0182
Galactomannan 0.0185 0.032 0.0185
Glucan 0.0623 0.108 0.0623
Xylan 0.0792 0.0303 0.0175
Xyloglucan 0.0487 0.0844 0.0487
Arabinogalactan 0.0797 0.029 0.0167
Pectin 0 0 0
Rhamnogalacturonan 0.0267 0.0462 0.0267
Polygalacturonic acid 0.1298 0.0231 0.0133
Mannan 0.1035 0.1054 0.0609
Amylopectin 0.0834 0.0286 0.0165
Inulin 0.103 0.0899 0.0519
BSA 0 0 0
Starvation induced by water agar transfer Expression profiling on starvation induced by transfer to water agar Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Control 0.0281 0.0487 0.0281
2h WAT 0.0634 0.0552 0.0319
4h WAT 0 0 0
8h WAT 0.043 0.0746 0.043
16h WAT 0.0891 0.1543 0.0891
24h WAT 0.0047 0.0081 0.0047
WAT hyphal knot -30h 0 0 0
WAT hyphal knot -22h 0 0 0
WAT hyphal knot -15h 0.1004 0.1739 0.1004
WAT hyphal knot -7.5h 0.1325 0.2296 0.1325
WAT hyphal knot 0.049 0.0849 0.049
WAT hyphal knot +7.5h 0 0 0
Straw time series Time series expression profiling on straw as a carbon source Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 0.032 0.0555 0.032
Straw 3h 0.0855 0.148 0.0855
Straw 6h 0 0 0
Straw 12h 0.0456 0.079 0.0456
Straw 24h 0.0762 0.132 0.0762
Stress conditions 1 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 0.0197 0.0341 0.0197
Frost (-20C, 30min) 0.0205 0.0355 0.0205
Heat shock (47C, 2h) 0 0 0
High CO2 0 0 0
Drought (4% agar, 12h) 0.0135 0.0233 0.0135
Oxidative (1mM H2O2, 3h) 0.018 0.0311 0.018
Acidic (pH4, 3h) 0 0 0
Alkaline (pH9, 3h) 0 0 0
Osmotic (sorbitol 2h) 0 0 0
CongoRed (3h) 0.0379 0.0657 0.0379
Cobalt chloride control 0.03 0.026 0.015
Cobalt chloride 2mM 0 0 0
Stress conditions 2 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 0.0396 0.0686 0.0396
Cold stimulation 0.0102 0.0177 0.0102
Scratched surface 0.1589 0.1792 0.1035
Ca2+, 200mM, 24h 0 0 0
Cu2+, 2mM, 6h 0 0 0
Voriconazole 0 0 0
Trichoderma interaction, early 0 0 0
Trichoderma interaction 60h 1.4629 1.3963 0.8062
Cobalt chloride 2mM repeat 0.0888 0.1539 0.0888
Hypoxia 0.1226 0.1176 0.0679
Hypoxia control 0.0913 0.1581 0.0913
Protoplastation control 0.0049 0.0069 0.0049
Protoplastation 3.5h 0 0 0
Protoplastation 1.5h 0 0 0

General data

Systematic name -
Protein id CopciAB_430687.T0
Description Protein kinase subdomain-containing protein PKL ccin3

Annotation summary

Conserved domains

Analysis Signature accession Signature description InterPro Accession Start End
No records

SignalP

Prediction Start End Score
No records

Transmembrane domains

Domain n Start End Length
No records

InterPro

Accession Description
No records

GO

Go id Term Ontology
No records

KEGG

KEGG Orthology
No records

EggNOG

COG category Description
G Protein kinase subdomain-containing protein PKL ccin3

CAZy

Class Family Subfamily
No records

Transcription factor

Group
No records

Conservation of CopciAB_430687 across fungi.

Arrow shows the origin of gene family containing CopciAB_430687.

Protein

Sequence id CopciAB_430687.T0
Sequence >CopciAB_430687.T0
MFSTLLIHNCATIGGRSTTITLKVSPSFPGAIWFRERRGEPAPETWDSKDVSKANGTLELSLLGRIAEGRIGVTY
IAKVVSATHAPLVPQARLPDTVCLKFAKPKFSRSLAREAWVYEQLDSLQGISIPNFYGFFSSSMVEQPAFPNLEF
TPWTDRKHQIEEIDSPPSDIDEFPSPDWLADDVPPYPGDAPSYEDPSGYQKTSPWCRWVRPQENPTISVIVLEHL
GETCTGNRRNDVLAAVREVLEDIAEHGLIHSNVAAWNVLSLRDRADSQARYCQRHDTVHPWRIIDFDPCGMVEMN
NRNPHGRILLEMAGKVFPTSPGFSF
Length 325

Coding

Sequence id CopciAB_430687.T0
Sequence >CopciAB_430687.T0
ATGTTCTCAACACTCCTTATTCATAACTGCGCCACTATTGGAGGCAGGTCAACAACGATAACCCTCAAAGTCTCA
CCATCATTCCCTGGTGCCATCTGGTTTCGAGAGCGTCGCGGTGAGCCAGCTCCCGAGACCTGGGACTCCAAAGAC
GTCTCCAAAGCCAATGGCACATTGGAGCTTTCCCTTCTCGGACGCATTGCTGAAGGCCGTATTGGTGTGACATAC
ATCGCCAAAGTCGTCTCCGCAACGCATGCCCCCCTGGTCCCACAAGCAAGGCTTCCAGACACCGTCTGCCTCAAG
TTTGCCAAACCAAAGTTCAGTCGCAGTTTGGCACGAGAGGCATGGGTCTACGAGCAGCTCGATTCACTCCAGGGA
ATCTCTATTCCCAACTTCTACGGCTTCTTTTCGTCGTCTATGGTGGAGCAGCCCGCTTTTCCAAACCTCGAATTT
ACACCATGGACAGATAGGAAGCACCAAATTGAAGAAATAGATAGCCCTCCTAGCGACATCGACGAGTTCCCTTCG
CCAGACTGGCTTGCCGACGACGTGCCGCCTTACCCTGGAGATGCACCAAGCTACGAAGACCCGTCTGGATACCAG
AAGACCTCGCCATGGTGTAGATGGGTTCGCCCACAAGAAAATCCAACGATCAGCGTCATCGTTCTCGAGCACCTG
GGAGAGACCTGTACTGGGAACCGAAGGAACGACGTGCTAGCGGCAGTGAGAGAGGTCCTGGAGGATATTGCTGAG
CACGGTCTTATTCATTCGAACGTTGCGGCTTGGAACGTCCTTTCCCTCAGGGATAGGGCGGATAGCCAAGCGCGA
TATTGTCAACGCCACGACACTGTTCATCCTTGGAGAATTATCGATTTTGACCCGTGCGGAATGGTTGAAATGAAT
AATCGGAATCCACACGGAAGGATTTTGCTCGAGATGGCGGGCAAGGTGTTCCCTACGTCACCCGGGTTCTCTTTC
TAA
Length 978

Transcript

Sequence id CopciAB_430687.T0
Sequence >CopciAB_430687.T0
ATGTTCTCAACACTCCTTATTCATAACTGCGCCACTATTGGAGGCAGGTCAACAACGATAACCCTCAAAGTCTCA
CCATCATTCCCTGGTGCCATCTGGTTTCGAGAGCGTCGCGGTGAGCCAGCTCCCGAGACCTGGGACTCCAAAGAC
GTCTCCAAAGCCAATGGCACATTGGAGCTTTCCCTTCTCGGACGCATTGCTGAAGGCCGTATTGGTGTGACATAC
ATCGCCAAAGTCGTCTCCGCAACGCATGCCCCCCTGGTCCCACAAGCAAGGCTTCCAGACACCGTCTGCCTCAAG
TTTGCCAAACCAAAGTTCAGTCGCAGTTTGGCACGAGAGGCATGGGTCTACGAGCAGCTCGATTCACTCCAGGGA
ATCTCTATTCCCAACTTCTACGGCTTCTTTTCGTCGTCTATGGTGGAGCAGCCCGCTTTTCCAAACCTCGAATTT
ACACCATGGACAGATAGGAAGCACCAAATTGAAGAAATAGATAGCCCTCCTAGCGACATCGACGAGTTCCCTTCG
CCAGACTGGCTTGCCGACGACGTGCCGCCTTACCCTGGAGATGCACCAAGCTACGAAGACCCGTCTGGATACCAG
AAGACCTCGCCATGGTGTAGATGGGTTCGCCCACAAGAAAATCCAACGATCAGCGTCATCGTTCTCGAGCACCTG
GGAGAGACCTGTACTGGGAACCGAAGGAACGACGTGCTAGCGGCAGTGAGAGAGGTCCTGGAGGATATTGCTGAG
CACGGTCTTATTCATTCGAACGTTGCGGCTTGGAACGTCCTTTCCCTCAGGGATAGGGCGGATAGCCAAGCGCGA
TATTGTCAACGCCACGACACTGTTCATCCTTGGAGAATTATCGATTTTGACCCGTGCGGAATGGTTGAAATGAAT
AATCGGAATCCACACGGAAGGATTTTGCTCGAGATGGCGGGCAAGGTGTTCCCTACGTCACCCGGGTTCTCTTTC
TAA
Length 978

Gene

Sequence id CopciAB_430687.T0
Sequence >CopciAB_430687.T0
ATGTTCTCAACACTCCTTATTCATAACTGCGCCACTATTGGAGGCAGGTCAACAACGATAACCCTCAAAGTCTCA
CCATCATTCCCTGGTGCCATCTGGTTTCGAGAGCGTCGCGGTGAGCCAGCTCCCGAGACCTGGGACTCCAAAGAC
GTCTCCAAAGCCAATGGCACATTGGAGCTTTCCCTTCTCGGACGCATTGCTGAAGGCCGTATTGGTGTGACATAC
ATCGCCAAAGTCGTCTCCGCAACGCATGCCCCCCTGGTCCCACAAGCAAGGCTTCCAGACACCGTCTGCCTCAAG
TTTGCCAAACCAAAGTTCAGTCGCAGTTTGGCACGAGAGGCATGGGTCTACGAGCAGCTCGATTCACTCCAGGGA
ATCTCTATTCCCAACTTCTACGGCTTCTTTTCGTCGTCTATGGTGGAGCAGCCCGCTTTTCCAAACCTCGAATTT
ACACCATGGACAGATAGGAAGCACCAAATTGAAGAAATAGATAGCCCTCCTAGCGACATCGACGAGTTCCCTTCG
CCAGACTGGCTTGCCGACGACGTGCCGCCTTACCCTGGAGATGCACCAAGCTACGAAGACCCGTCTGGATACCAG
AAGACCTCGCCATGGTGTAGATGGGTTCGCCCACAAGAAAATCCAACGATCAGCGTCATCGTTCTCGAGCACCTG
GGAGAGACCTGTACTGGGAACCGAAGGAACGACGTGCTGTAAGTGCGCCTGCTACAGCCGCCCCATCTGCACGCT
TTACTGAATACCACACTCCAGAGCGGCAGTGAGAGAGGTCCTGGAGGATATTGCTGAGCACGGTCTTATTCATTC
GAACGTTGCGGCTTGGAACGTCCTTTCCCTCAGGGATAGGGCGGATAGCCAAGCGCGATATTGTCAACGCCACGA
CACTGTTCATCCTTGGAGAATTATCGATTTTGACCCGTGCGGAATGGTTGAAATGAATAATCGGAATCCACACGG
AAGGATTTTGCTCGAGATGGCGGGCAAGGTGTTCCCTACGTCACCCGGGTTCTCTTTCTAA
Length 1036