| Systematic name | CopciAB_442792 | Strain | Coprinopsis cinerea Okayama 7 |
|---|---|---|---|
| Standard name | - | Synonyms | 442792 |
| Uniprot id | Functional description | Belongs to the glycosyl hydrolase 5 (cellulase A) family | |
| Location | scaffold_1:3892685..3895007 | Strand | + |
| Gene length (nt) | 2323 | Transcript length (nt) | 1694 |
| CDS length (nt) | 1419 | Protein length (aa) | 472 |
| Strain name | Gene / Protein name |
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| Strain name | Gene / Protein name | Pident | E-value | Bits |
|---|---|---|---|---|
| 0 |
| Name | Summary | Attribution | Assay type | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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| Carbon metabolism | Transcriptional changes along alternative morphogenetic paths of C. cinerea | Xie et al. 2020 | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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| Complex carbon sources 1 (long incubation) | Expression profiling on diverse complex carbon sources. | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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| Coprinopsis challenged with bacteria | Transcriptional response to Bacillus subtilis and Escherichia coli. | Kombrink et al. 2018 | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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| Early development 1 | Time series expression profiling of basidiospore and oidium germination | Hegedus et al. | QuantSeq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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| Early development 2 | Time series expression profiling of mycelial growth, light induction and fruiting body initiation. | Hegedus et al. | QuantSeq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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| Fruiting body development | RNA-Seq analysis of fruiting body development | Krizsan et al. 2019 | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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| Nitrogen sources (12h incubation) | Expression profiling on diverse nitrogen sources. | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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| Plant biomass (12h incubation) | Expression profiling on diverse plant biomasses as carbon sources. | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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| Simple and complex carbon and nitrogen sources | Expression profiling on diverse complex carbon and nitrogen sources. | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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| Simple and complex carbon sources (12h incubation) | Expression profiling on diverse complex carbon sources. | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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| Starvation induced by water agar transfer | Expression profiling on starvation induced by transfer to water agar | Hegedus et al. | QuantSeq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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| Straw time series | Time series expression profiling on straw as a carbon source | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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| Stress conditions 1 | Expression profiling under various stress conditions | Hegedus et al. | QuantSeq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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| Stress conditions 2 | Expression profiling under various stress conditions | Hegedus et al. | QuantSeq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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| Systematic name | - |
|---|---|
| Protein id | CopciAB_442792.T0 |
| Description | Belongs to the glycosyl hydrolase 5 (cellulase A) family |
| Analysis | Signature accession | Signature description | InterPro Accession | Start | End |
|---|---|---|---|---|---|
| Pfam | PF00150 | Cellulase (glycosyl hydrolase family 5) | IPR001547 | 44 | 263 |
| Prediction | Start | End | Score |
|---|---|---|---|
| SP(Sec/SPI) | 1 | 17 | 0.989 |
| Domain n | Start | End | Length |
|---|---|---|---|
| No records | |||
| Accession | Description |
|---|---|
| IPR045053 | Mannan endo-1,4-beta-mannosidase-like |
| IPR001547 | Glycoside hydrolase, family 5 |
| IPR017853 | Glycoside hydrolase superfamily |
| Go id | Term | Ontology |
|---|---|---|
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | MF |
| GO:0071704 | organic substance metabolic process | BP |
| KEGG Orthology |
|---|
| K19355 |
| COG category | Description |
|---|---|
| G | Belongs to the glycosyl hydrolase 5 (cellulase A) family |
| Class | Family | Subfamily |
|---|---|---|
| GH | GH5 | GH5_30 |
| Group |
|---|
| No records |
Arrow shows the origin of gene family containing CopciAB_442792.
| Sequence id | CopciAB_442792.T0 |
|---|---|
| Sequence |
>CopciAB_442792.T0 MKLLLPVVLLQLWLVNAMSLVARNNRSSSFVTVKDGRFSLDNELFRFYGTNAHWIQMTTDDDMENTFHAIATAGY NVVRTWAFNDVPSKPASGPYFQVLNGNGGNINEGNDGLKRLDKAVSLAQKYGIKLLLSLTNNWNPERPVPNTAWN RRANTKELPRGYLSNDYGGMDAYVRALRPNGTHDSFYTDNTIINAFKNYVSHVVKRYANSPAVLAWELGNDLRCS STLPASNNCNTGTITNWTADISSFIKSIDSNHLITAGDGGFYCLKCPKRFAKDFTKPTSSLPGSAFDGSYGVDTE DILAIPSIDFGSFQLFPDQVNYFPTVDDSFATKAIGDGGKWISAHSNTASRLGKPEALTAASILGKENYSSFAPF NSTSQIPDGTPCAGVEPFQVDYAFTSWAGVALHGNIGGVLEYQWQQDGLTSHGTIHENWEKRALTESPQDGSARY KGPASGQNAEQFAADLPPIEDE |
| Length | 472 |
| Sequence id | CopciAB_442792.T0 |
|---|---|
| Sequence |
>CopciAB_442792.T0 ATGAAGCTTCTCCTACCTGTAGTCCTCCTTCAACTATGGCTTGTCAATGCGATGAGCTTGGTTGCACGCAACAAC CGATCCTCTAGCTTTGTCACGGTCAAGGACGGTCGGTTCAGCTTGGACAACGAACTGTTCCGCTTCTATGGAACG AATGCGCATTGGATTCAAATGACGACCGACGACGATATGGAGAACACCTTCCACGCCATTGCTACCGCGGGCTAC AACGTTGTTCGCACTTGGGCTTTCAACGATGTCCCTAGCAAGCCTGCGTCGGGTCCTTACTTCCAGGTTCTCAAT GGCAACGGCGGCAACATCAACGAGGGCAACGACGGCCTCAAGCGCCTGGACAAGGCGGTGTCGTTGGCTCAGAAA TACGGAATCAAGCTGCTCCTCAGTCTCACAAACAACTGGAATCCTGAACGCCCTGTCCCAAACACTGCGTGGAAC CGCCGTGCCAACACGAAGGAACTTCCAAGAGGATATCTTTCGAACGACTACGGGGGAATGGATGCTTATGTTCGT GCCCTCCGTCCAAACGGGACTCACGACTCGTTCTACACCGATAACACCATCATCAACGCTTTTAAGAATTACGTG TCTCACGTTGTAAAGCGTTACGCTAACAGTCCCGCTGTGCTCGCCTGGGAGCTCGGTAACGACTTGAGGTGCTCG TCAACTCTTCCAGCGTCTAACAACTGCAACACTGGAACGATTACCAACTGGACGGCGGATATTTCCAGCTTTATC AAGTCTATCGACTCCAATCACCTTATCACTGCAGGTGACGGTGGCTTTTACTGTTTGAAATGCCCCAAGAGATTC GCAAAGGACTTCACCAAACCCACTTCATCTCTTCCTGGCAGCGCTTTCGACGGGTCCTATGGCGTTGATACAGAA GACATCCTTGCCATCCCTTCCATTGACTTCGGATCTTTCCAACTCTTCCCCGATCAGGTGAACTACTTCCCTACC GTCGATGACTCATTCGCTACAAAGGCTATCGGCGATGGTGGCAAATGGATTTCGGCCCATTCCAACACTGCATCC AGGCTTGGCAAGCCGGAAGCGCTCACTGCAGCTTCCATTCTTGGCAAGGAGAACTACTCCTCTTTCGCCCCATTC AACTCGACCTCCCAGATCCCTGACGGTACACCCTGCGCGGGTGTTGAACCTTTCCAGGTCGACTATGCATTCACC TCATGGGCAGGAGTCGCCCTTCACGGCAACATCGGCGGAGTCCTCGAATACCAGTGGCAACAAGACGGTCTGACC AGTCACGGAACGATCCACGAGAACTGGGAGAAGAGAGCCCTCACCGAGTCTCCCCAGGATGGCTCTGCTCGCTAC AAAGGCCCTGCTAGTGGCCAGAATGCCGAGCAATTTGCTGCGGACTTGCCGCCCATCGAGGACGAGTAA |
| Length | 1419 |
| Sequence id | CopciAB_442792.T0 |
|---|---|
| Sequence |
>CopciAB_442792.T0 AGGGCATTCACCTGTCTCCCTTGCCTTCTCACCCACATCATGAAGCTTCTCCTACCTGTAGTCCTCCTTCAACTA TGGCTTGTCAATGCGATGAGCTTGGTTGCACGCAACAACCGATCCTCTAGCTTTGTCACGGTCAAGGACGGTCGG TTCAGCTTGGACAACGAACTGTTCCGCTTCTATGGAACGAATGCGCATTGGATTCAAATGACGACCGACGACGAT ATGGAGAACACCTTCCACGCCATTGCTACCGCGGGCTACAACGTTGTTCGCACTTGGGCTTTCAACGATGTCCCT AGCAAGCCTGCGTCGGGTCCTTACTTCCAGGTTCTCAATGGCAACGGCGGCAACATCAACGAGGGCAACGACGGC CTCAAGCGCCTGGACAAGGCGGTGTCGTTGGCTCAGAAATACGGAATCAAGCTGCTCCTCAGTCTCACAAACAAC TGGAATCCTGAACGCCCTGTCCCAAACACTGCGTGGAACCGCCGTGCCAACACGAAGGAACTTCCAAGAGGATAT CTTTCGAACGACTACGGGGGAATGGATGCTTATGTTCGTGCCCTCCGTCCAAACGGGACTCACGACTCGTTCTAC ACCGATAACACCATCATCAACGCTTTTAAGAATTACGTGTCTCACGTTGTAAAGCGTTACGCTAACAGTCCCGCT GTGCTCGCCTGGGAGCTCGGTAACGACTTGAGGTGCTCGTCAACTCTTCCAGCGTCTAACAACTGCAACACTGGA ACGATTACCAACTGGACGGCGGATATTTCCAGCTTTATCAAGTCTATCGACTCCAATCACCTTATCACTGCAGGT GACGGTGGCTTTTACTGTTTGAAATGCCCCAAGAGATTCGCAAAGGACTTCACCAAACCCACTTCATCTCTTCCT GGCAGCGCTTTCGACGGGTCCTATGGCGTTGATACAGAAGACATCCTTGCCATCCCTTCCATTGACTTCGGATCT TTCCAACTCTTCCCCGATCAGGTGAACTACTTCCCTACCGTCGATGACTCATTCGCTACAAAGGCTATCGGCGAT GGTGGCAAATGGATTTCGGCCCATTCCAACACTGCATCCAGGCTTGGCAAGCCGGAAGCGCTCACTGCAGCTTCC ATTCTTGGCAAGGAGAACTACTCCTCTTTCGCCCCATTCAACTCGACCTCCCAGATCCCTGACGGTACACCCTGC GCGGGTGTTGAACCTTTCCAGGTCGACTATGCATTCACCTCATGGGCAGGAGTCGCCCTTCACGGCAACATCGGC GGAGTCCTCGAATACCAGTGGCAACAAGACGGTCTGACCAGTCACGGAACGATCCACGAGAACTGGGAGAAGAGA GCCCTCACCGAGTCTCCCCAGGATGGCTCTGCTCGCTACAAAGGCCCTGCTAGTGGCCAGAATGCCGAGCAATTT GCTGCGGACTTGCCGCCCATCGAGGACGAGTAAATGGGAGCACCTGACCGTCCACAGTCTAGCCCATTCCAGACA CCCTTACCGGAATCCATCACGATCTGATACGACTGATTTTTCATCTTCACGCTATTCATACCTTCGCACCACGCC TTCGTACAATTTCTGAACCCTCCTGTCGCATTCTAGCTCTCTCAGCTCCGTAGTTTCTATACCTCCTTGCCTTGT ATTACGACATACCTTTCCCAATGTCATGGACTACTCCCCTTTTA |
| Length | 1694 |
| Sequence id | CopciAB_442792.T0 |
|---|---|
| Sequence |
>CopciAB_442792.T0 AGGGCATTCACCTGTCTCCCTTGCCTTCTCACCCACATCATGAAGCTTCTCCTACCTGTAGTCCTCCTTCAACTA TGGCTTGTCAATGCGATGAGCTTGGTTGCACGCAACAACCGATCCTCTAGCTTTGTCACGGTCAAGGACGGTCGG TTCAGCTTGGACAACGAGTACGTTCGCTCTCAGACTCTCGTGCTCATCAAAGACTCTAGATTGCCTCGTCAGACT GTTCCGCTTCTATGGAACGAATGCGCATTGGATTCAAATGACGACCGACGACGATATGGAGAACACCTTCCACGC CATTGCTACCGCGGGCTACAACGTTGTTCGCACTTGGGCTTTCAACGATGTCCCTAGCAAGCCTGCGTCGGGTCC TTACTTCCAGGTAATCGACCACCCTTCTGGCTCCGAATATCGATTAATCCTTGCTAGGTTCTCAATGGCAACGGC GGCAACATCAACGAGGGCAACGACGGCCTCAAGCGCCTGGACAAGGCGGTGTCGTTGGCTCAGAAATACGGAATC AAGCTGCTCCTCAGTCTCACAAACAACTGGAATCCTGAACGCCCTGTCCCAAACACTGCGTGGAACCGCCGTGCC AACACGAAGGAACTTCCAAGAGGATATCTTTCGAACGACTACGGTACGTCCATTTGTTGAAAACTTCCAAGGAAC ATGAAACTTATTCTTTTCAAGGGGGAATGGATGCTTATGTTCGTGCCCTCCGTCCAAACGGGACTCACGACTCGT TCTACACCGATAACACCATCATCAACGCTTTTAAGAATTACGTGTCTCACGTTGTAAAGCGTTACGCTAACAGTC CCGCTGTGCTCGCCTGGGAGCTCGGTAACGACTTGAGGTGCTCGTCAACTCTTCCAGCGTCTAACAACTGCAACA CTGGAACGATTACCAACTGGACGGCGGATATTTGTAAGTGACTCATGTTCATTTCGGACTTTCCATCCGATTTCT GACCCTTGTTGCAGCCAGCTTTATCAAGTCTATCGACTCCAATCACCTTATCACTGCAGGGTAAGAGTTTTCCGC CGGATCGATAACGTGCAACGAGGCCGATTATTCGCTTCATTATAGTGACGGTGGCTTTTACTGTTTGAAATGCCC CAAGAGATTCGCAAAGGACTTCACCAAACCCACTTCATCTCTTCCTGGCAGCGCTTTCGACGGGTCCTATGGCGT TGATACAGAAGACATCCTTGCCATCCCTTCCATTGACTTCGGATCTTTGTAAGTCATGGTCCTCGTTTACAGAGT CTCCGTCGTTTCTCACCTTCATGTTTGCGCCCACACATAGCCAACTCTTCCCCGATCAGGTGAACTACTTCCCTA CCGTCGATGACTCATTCGCTACAAAGGCTATCGGCGATGGTGGCAAATGGATTTCGGCCCATTCCAACACTGCAT CCAGGTACGCCTTCTTTTCGGCTTGATTGGGGCTCGATCCTGAGGACCTGAGCGCTTAACCATTGTTAGGCTTGG CAAGCCGGAAGCGCTCACTGCAGCTTCCATTCTTGGCAAGGAGAACTACTCCTCTTTCGCCCCATTCAACTCGAC CTCCCAGATCCCTGACGGTACACCCTGCGGTAATTATCCCTTATCCTGACGAAGGACTGTATTGGAGTCTGACGT TCCTGTGACAGCGGGTGTTGAACCTTTCCAGGTCGACTATGCATTCACCTCATGGGCAGGAGGTACGTAAATCAG TAGAACATGTCTGCCTCATGTGCTGAGTTAACAATGCGCTCTAGTCGCCCTTCACGGCAACATCGGCGGAGTCCT CGAATACCAGGTACGTCATCGCCCCATTATCTTTCGCGTTCGACTACTTACCTCTTACCTTCAGTGGCAACAAGA CGGTCTGACCAGTCACGGAACGATCCACGAGAACTGGGAGAAGAGAGCCCTCACCGAGTCTCCCCAGGATGGCTC TGCTCGGTAAGTGCTAAAATCGCCTTGCCGCACAGCGAACATTTGAGCTCTTGGTTCACCGCAGCTACAAAGGCC CTGCTAGTGGCCAGAATGCCGAGCAATTTGCTGCGGACTTGCCGCCCATCGAGGACGAGTAAATGGGAGCACCTG ACCGTCCACAGTCTAGCCCATTCCAGACACCCTTACCGGAATCCATCACGATCTGATACGACTGATTTTTCATCT TCACGCTATTCATACCTTCGCACCACGCCTTCGTACAATTTCTGAACCCTCCTGTCGCATTCTAGCTCTCTCAGC TCCGTAGTTTCTATACCTCCTTGCCTTGTATTACGACATACCTTTCCCAATGTCATGGACTACTCCCCTTTTA |
| Length | 2323 |