Systematic name | CopciAB_442792 | Strain | Coprinopsis cinerea Okayama 7 |
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Standard name | - | Synonyms | 442792 |
Uniprot id | Functional description | Belongs to the glycosyl hydrolase 5 (cellulase A) family | |
Location | scaffold_1:3892685..3895007 | Strand | + |
Gene length (nt) | 2323 | Transcript length (nt) | 1694 |
CDS length (nt) | 1419 | Protein length (aa) | 472 |
Strain name | Gene / Protein name |
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Strain name | Gene / Protein name | Pident | E-value | Bits |
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0 |
Name | Summary | Attribution | Assay type | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Carbon metabolism | Transcriptional changes along alternative morphogenetic paths of C. cinerea | Xie et al. 2020 | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Complex carbon sources 1 (long incubation) | Expression profiling on diverse complex carbon sources. | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Coprinopsis challenged with bacteria | Transcriptional response to Bacillus subtilis and Escherichia coli. | Kombrink et al. 2018 | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Early development 1 | Time series expression profiling of basidiospore and oidium germination | Hegedus et al. | QuantSeq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Early development 2 | Time series expression profiling of mycelial growth, light induction and fruiting body initiation. | Hegedus et al. | QuantSeq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Fruiting body development | RNA-Seq analysis of fruiting body development | Krizsan et al. 2019 | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Nitrogen sources (12h incubation) | Expression profiling on diverse nitrogen sources. | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Plant biomass (12h incubation) | Expression profiling on diverse plant biomasses as carbon sources. | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Simple and complex carbon and nitrogen sources | Expression profiling on diverse complex carbon and nitrogen sources. | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Simple and complex carbon sources (12h incubation) | Expression profiling on diverse complex carbon sources. | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Starvation induced by water agar transfer | Expression profiling on starvation induced by transfer to water agar | Hegedus et al. | QuantSeq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Straw time series | Time series expression profiling on straw as a carbon source | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Stress conditions 1 | Expression profiling under various stress conditions | Hegedus et al. | QuantSeq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Stress conditions 2 | Expression profiling under various stress conditions | Hegedus et al. | QuantSeq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Systematic name | - |
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Protein id | CopciAB_442792.T0 |
Description | Belongs to the glycosyl hydrolase 5 (cellulase A) family |
Analysis | Signature accession | Signature description | InterPro Accession | Start | End |
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Pfam | PF00150 | Cellulase (glycosyl hydrolase family 5) | IPR001547 | 44 | 263 |
Prediction | Start | End | Score |
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SP(Sec/SPI) | 1 | 17 | 0.989 |
Domain n | Start | End | Length |
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No records |
Accession | Description |
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IPR045053 | Mannan endo-1,4-beta-mannosidase-like |
IPR001547 | Glycoside hydrolase, family 5 |
IPR017853 | Glycoside hydrolase superfamily |
Go id | Term | Ontology |
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GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | MF |
GO:0071704 | organic substance metabolic process | BP |
KEGG Orthology |
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K19355 |
COG category | Description |
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G | Belongs to the glycosyl hydrolase 5 (cellulase A) family |
Class | Family | Subfamily |
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GH | GH5 | GH5_30 |
Group |
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No records |
Arrow shows the origin of gene family containing CopciAB_442792.
Sequence id | CopciAB_442792.T0 |
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Sequence |
>CopciAB_442792.T0 MKLLLPVVLLQLWLVNAMSLVARNNRSSSFVTVKDGRFSLDNELFRFYGTNAHWIQMTTDDDMENTFHAIATAGY NVVRTWAFNDVPSKPASGPYFQVLNGNGGNINEGNDGLKRLDKAVSLAQKYGIKLLLSLTNNWNPERPVPNTAWN RRANTKELPRGYLSNDYGGMDAYVRALRPNGTHDSFYTDNTIINAFKNYVSHVVKRYANSPAVLAWELGNDLRCS STLPASNNCNTGTITNWTADISSFIKSIDSNHLITAGDGGFYCLKCPKRFAKDFTKPTSSLPGSAFDGSYGVDTE DILAIPSIDFGSFQLFPDQVNYFPTVDDSFATKAIGDGGKWISAHSNTASRLGKPEALTAASILGKENYSSFAPF NSTSQIPDGTPCAGVEPFQVDYAFTSWAGVALHGNIGGVLEYQWQQDGLTSHGTIHENWEKRALTESPQDGSARY KGPASGQNAEQFAADLPPIEDE |
Length | 472 |
Sequence id | CopciAB_442792.T0 |
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Sequence |
>CopciAB_442792.T0 ATGAAGCTTCTCCTACCTGTAGTCCTCCTTCAACTATGGCTTGTCAATGCGATGAGCTTGGTTGCACGCAACAAC CGATCCTCTAGCTTTGTCACGGTCAAGGACGGTCGGTTCAGCTTGGACAACGAACTGTTCCGCTTCTATGGAACG AATGCGCATTGGATTCAAATGACGACCGACGACGATATGGAGAACACCTTCCACGCCATTGCTACCGCGGGCTAC AACGTTGTTCGCACTTGGGCTTTCAACGATGTCCCTAGCAAGCCTGCGTCGGGTCCTTACTTCCAGGTTCTCAAT GGCAACGGCGGCAACATCAACGAGGGCAACGACGGCCTCAAGCGCCTGGACAAGGCGGTGTCGTTGGCTCAGAAA TACGGAATCAAGCTGCTCCTCAGTCTCACAAACAACTGGAATCCTGAACGCCCTGTCCCAAACACTGCGTGGAAC CGCCGTGCCAACACGAAGGAACTTCCAAGAGGATATCTTTCGAACGACTACGGGGGAATGGATGCTTATGTTCGT GCCCTCCGTCCAAACGGGACTCACGACTCGTTCTACACCGATAACACCATCATCAACGCTTTTAAGAATTACGTG TCTCACGTTGTAAAGCGTTACGCTAACAGTCCCGCTGTGCTCGCCTGGGAGCTCGGTAACGACTTGAGGTGCTCG TCAACTCTTCCAGCGTCTAACAACTGCAACACTGGAACGATTACCAACTGGACGGCGGATATTTCCAGCTTTATC AAGTCTATCGACTCCAATCACCTTATCACTGCAGGTGACGGTGGCTTTTACTGTTTGAAATGCCCCAAGAGATTC GCAAAGGACTTCACCAAACCCACTTCATCTCTTCCTGGCAGCGCTTTCGACGGGTCCTATGGCGTTGATACAGAA GACATCCTTGCCATCCCTTCCATTGACTTCGGATCTTTCCAACTCTTCCCCGATCAGGTGAACTACTTCCCTACC GTCGATGACTCATTCGCTACAAAGGCTATCGGCGATGGTGGCAAATGGATTTCGGCCCATTCCAACACTGCATCC AGGCTTGGCAAGCCGGAAGCGCTCACTGCAGCTTCCATTCTTGGCAAGGAGAACTACTCCTCTTTCGCCCCATTC AACTCGACCTCCCAGATCCCTGACGGTACACCCTGCGCGGGTGTTGAACCTTTCCAGGTCGACTATGCATTCACC TCATGGGCAGGAGTCGCCCTTCACGGCAACATCGGCGGAGTCCTCGAATACCAGTGGCAACAAGACGGTCTGACC AGTCACGGAACGATCCACGAGAACTGGGAGAAGAGAGCCCTCACCGAGTCTCCCCAGGATGGCTCTGCTCGCTAC AAAGGCCCTGCTAGTGGCCAGAATGCCGAGCAATTTGCTGCGGACTTGCCGCCCATCGAGGACGAGTAA |
Length | 1419 |
Sequence id | CopciAB_442792.T0 |
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Sequence |
>CopciAB_442792.T0 AGGGCATTCACCTGTCTCCCTTGCCTTCTCACCCACATCATGAAGCTTCTCCTACCTGTAGTCCTCCTTCAACTA TGGCTTGTCAATGCGATGAGCTTGGTTGCACGCAACAACCGATCCTCTAGCTTTGTCACGGTCAAGGACGGTCGG TTCAGCTTGGACAACGAACTGTTCCGCTTCTATGGAACGAATGCGCATTGGATTCAAATGACGACCGACGACGAT ATGGAGAACACCTTCCACGCCATTGCTACCGCGGGCTACAACGTTGTTCGCACTTGGGCTTTCAACGATGTCCCT AGCAAGCCTGCGTCGGGTCCTTACTTCCAGGTTCTCAATGGCAACGGCGGCAACATCAACGAGGGCAACGACGGC CTCAAGCGCCTGGACAAGGCGGTGTCGTTGGCTCAGAAATACGGAATCAAGCTGCTCCTCAGTCTCACAAACAAC TGGAATCCTGAACGCCCTGTCCCAAACACTGCGTGGAACCGCCGTGCCAACACGAAGGAACTTCCAAGAGGATAT CTTTCGAACGACTACGGGGGAATGGATGCTTATGTTCGTGCCCTCCGTCCAAACGGGACTCACGACTCGTTCTAC ACCGATAACACCATCATCAACGCTTTTAAGAATTACGTGTCTCACGTTGTAAAGCGTTACGCTAACAGTCCCGCT GTGCTCGCCTGGGAGCTCGGTAACGACTTGAGGTGCTCGTCAACTCTTCCAGCGTCTAACAACTGCAACACTGGA ACGATTACCAACTGGACGGCGGATATTTCCAGCTTTATCAAGTCTATCGACTCCAATCACCTTATCACTGCAGGT GACGGTGGCTTTTACTGTTTGAAATGCCCCAAGAGATTCGCAAAGGACTTCACCAAACCCACTTCATCTCTTCCT GGCAGCGCTTTCGACGGGTCCTATGGCGTTGATACAGAAGACATCCTTGCCATCCCTTCCATTGACTTCGGATCT TTCCAACTCTTCCCCGATCAGGTGAACTACTTCCCTACCGTCGATGACTCATTCGCTACAAAGGCTATCGGCGAT GGTGGCAAATGGATTTCGGCCCATTCCAACACTGCATCCAGGCTTGGCAAGCCGGAAGCGCTCACTGCAGCTTCC ATTCTTGGCAAGGAGAACTACTCCTCTTTCGCCCCATTCAACTCGACCTCCCAGATCCCTGACGGTACACCCTGC GCGGGTGTTGAACCTTTCCAGGTCGACTATGCATTCACCTCATGGGCAGGAGTCGCCCTTCACGGCAACATCGGC GGAGTCCTCGAATACCAGTGGCAACAAGACGGTCTGACCAGTCACGGAACGATCCACGAGAACTGGGAGAAGAGA GCCCTCACCGAGTCTCCCCAGGATGGCTCTGCTCGCTACAAAGGCCCTGCTAGTGGCCAGAATGCCGAGCAATTT GCTGCGGACTTGCCGCCCATCGAGGACGAGTAAATGGGAGCACCTGACCGTCCACAGTCTAGCCCATTCCAGACA CCCTTACCGGAATCCATCACGATCTGATACGACTGATTTTTCATCTTCACGCTATTCATACCTTCGCACCACGCC TTCGTACAATTTCTGAACCCTCCTGTCGCATTCTAGCTCTCTCAGCTCCGTAGTTTCTATACCTCCTTGCCTTGT ATTACGACATACCTTTCCCAATGTCATGGACTACTCCCCTTTTA |
Length | 1694 |
Sequence id | CopciAB_442792.T0 |
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Sequence |
>CopciAB_442792.T0 AGGGCATTCACCTGTCTCCCTTGCCTTCTCACCCACATCATGAAGCTTCTCCTACCTGTAGTCCTCCTTCAACTA TGGCTTGTCAATGCGATGAGCTTGGTTGCACGCAACAACCGATCCTCTAGCTTTGTCACGGTCAAGGACGGTCGG TTCAGCTTGGACAACGAGTACGTTCGCTCTCAGACTCTCGTGCTCATCAAAGACTCTAGATTGCCTCGTCAGACT GTTCCGCTTCTATGGAACGAATGCGCATTGGATTCAAATGACGACCGACGACGATATGGAGAACACCTTCCACGC CATTGCTACCGCGGGCTACAACGTTGTTCGCACTTGGGCTTTCAACGATGTCCCTAGCAAGCCTGCGTCGGGTCC TTACTTCCAGGTAATCGACCACCCTTCTGGCTCCGAATATCGATTAATCCTTGCTAGGTTCTCAATGGCAACGGC GGCAACATCAACGAGGGCAACGACGGCCTCAAGCGCCTGGACAAGGCGGTGTCGTTGGCTCAGAAATACGGAATC AAGCTGCTCCTCAGTCTCACAAACAACTGGAATCCTGAACGCCCTGTCCCAAACACTGCGTGGAACCGCCGTGCC AACACGAAGGAACTTCCAAGAGGATATCTTTCGAACGACTACGGTACGTCCATTTGTTGAAAACTTCCAAGGAAC ATGAAACTTATTCTTTTCAAGGGGGAATGGATGCTTATGTTCGTGCCCTCCGTCCAAACGGGACTCACGACTCGT TCTACACCGATAACACCATCATCAACGCTTTTAAGAATTACGTGTCTCACGTTGTAAAGCGTTACGCTAACAGTC CCGCTGTGCTCGCCTGGGAGCTCGGTAACGACTTGAGGTGCTCGTCAACTCTTCCAGCGTCTAACAACTGCAACA CTGGAACGATTACCAACTGGACGGCGGATATTTGTAAGTGACTCATGTTCATTTCGGACTTTCCATCCGATTTCT GACCCTTGTTGCAGCCAGCTTTATCAAGTCTATCGACTCCAATCACCTTATCACTGCAGGGTAAGAGTTTTCCGC CGGATCGATAACGTGCAACGAGGCCGATTATTCGCTTCATTATAGTGACGGTGGCTTTTACTGTTTGAAATGCCC CAAGAGATTCGCAAAGGACTTCACCAAACCCACTTCATCTCTTCCTGGCAGCGCTTTCGACGGGTCCTATGGCGT TGATACAGAAGACATCCTTGCCATCCCTTCCATTGACTTCGGATCTTTGTAAGTCATGGTCCTCGTTTACAGAGT CTCCGTCGTTTCTCACCTTCATGTTTGCGCCCACACATAGCCAACTCTTCCCCGATCAGGTGAACTACTTCCCTA CCGTCGATGACTCATTCGCTACAAAGGCTATCGGCGATGGTGGCAAATGGATTTCGGCCCATTCCAACACTGCAT CCAGGTACGCCTTCTTTTCGGCTTGATTGGGGCTCGATCCTGAGGACCTGAGCGCTTAACCATTGTTAGGCTTGG CAAGCCGGAAGCGCTCACTGCAGCTTCCATTCTTGGCAAGGAGAACTACTCCTCTTTCGCCCCATTCAACTCGAC CTCCCAGATCCCTGACGGTACACCCTGCGGTAATTATCCCTTATCCTGACGAAGGACTGTATTGGAGTCTGACGT TCCTGTGACAGCGGGTGTTGAACCTTTCCAGGTCGACTATGCATTCACCTCATGGGCAGGAGGTACGTAAATCAG TAGAACATGTCTGCCTCATGTGCTGAGTTAACAATGCGCTCTAGTCGCCCTTCACGGCAACATCGGCGGAGTCCT CGAATACCAGGTACGTCATCGCCCCATTATCTTTCGCGTTCGACTACTTACCTCTTACCTTCAGTGGCAACAAGA CGGTCTGACCAGTCACGGAACGATCCACGAGAACTGGGAGAAGAGAGCCCTCACCGAGTCTCCCCAGGATGGCTC TGCTCGGTAAGTGCTAAAATCGCCTTGCCGCACAGCGAACATTTGAGCTCTTGGTTCACCGCAGCTACAAAGGCC CTGCTAGTGGCCAGAATGCCGAGCAATTTGCTGCGGACTTGCCGCCCATCGAGGACGAGTAAATGGGAGCACCTG ACCGTCCACAGTCTAGCCCATTCCAGACACCCTTACCGGAATCCATCACGATCTGATACGACTGATTTTTCATCT TCACGCTATTCATACCTTCGCACCACGCCTTCGTACAATTTCTGAACCCTCCTGTCGCATTCTAGCTCTCTCAGC TCCGTAGTTTCTATACCTCCTTGCCTTGTATTACGACATACCTTTCCCAATGTCATGGACTACTCCCCTTTTA |
Length | 2323 |