| Systematic name | CopciAB_467166 | Strain | Coprinopsis cinerea Okayama 7 |
|---|---|---|---|
| Standard name | - | Synonyms | 467166 |
| Uniprot id | Functional description | ||
| Location | scaffold_3:795566..797918 | Strand | - |
| Gene length (nt) | 2353 | Transcript length (nt) | 2304 |
| CDS length (nt) | 1371 | Protein length (aa) | 456 |
| Strain name | Gene / Protein name |
|---|---|
| Strain name | Gene / Protein name | Pident | E-value | Bits |
|---|---|---|---|---|
| 0 |
| Name | Summary | Attribution | Assay type | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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| Carbon metabolism | Transcriptional changes along alternative morphogenetic paths of C. cinerea | Xie et al. 2020 | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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| Complex carbon sources 1 (long incubation) | Expression profiling on diverse complex carbon sources. | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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| Coprinopsis challenged with bacteria | Transcriptional response to Bacillus subtilis and Escherichia coli. | Kombrink et al. 2018 | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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| Early development 1 | Time series expression profiling of basidiospore and oidium germination | Hegedus et al. | QuantSeq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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| Early development 2 | Time series expression profiling of mycelial growth, light induction and fruiting body initiation. | Hegedus et al. | QuantSeq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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| Fruiting body development | RNA-Seq analysis of fruiting body development | Krizsan et al. 2019 | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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| Nitrogen sources (12h incubation) | Expression profiling on diverse nitrogen sources. | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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| Plant biomass (12h incubation) | Expression profiling on diverse plant biomasses as carbon sources. | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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| Simple and complex carbon and nitrogen sources | Expression profiling on diverse complex carbon and nitrogen sources. | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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| Simple and complex carbon sources (12h incubation) | Expression profiling on diverse complex carbon sources. | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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| Starvation induced by water agar transfer | Expression profiling on starvation induced by transfer to water agar | Hegedus et al. | QuantSeq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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| Straw time series | Time series expression profiling on straw as a carbon source | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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| Stress conditions 1 | Expression profiling under various stress conditions | Hegedus et al. | QuantSeq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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| Stress conditions 2 | Expression profiling under various stress conditions | Hegedus et al. | QuantSeq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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| Systematic name | - |
|---|---|
| Protein id | CopciAB_467166.T0 |
| Description |
| Analysis | Signature accession | Signature description | InterPro Accession | Start | End |
|---|---|---|---|---|---|
| No records | |||||
| Prediction | Start | End | Score |
|---|---|---|---|
| No records | |||
| Domain n | Start | End | Length |
|---|---|---|---|
| No records | |||
| Accession | Description |
|---|---|
| IPR013087 | Zinc finger C2H2-type |
| Go id | Term | Ontology |
|---|---|---|
| No records | ||
| KEGG Orthology |
|---|
| No records |
| COG category | Description |
|---|---|
| No records | |
| Class | Family | Subfamily |
|---|---|---|
| No records | ||
| Group |
|---|
| zinc finger, c2h2-type |
Arrow shows the origin of gene family containing CopciAB_467166.
| Sequence id | CopciAB_467166.T0 |
|---|---|
| Sequence |
>CopciAB_467166.T0 MAECNQSEFVDEWDALSAALFLPPLDLYGDFVWLPSSEYGDNAATLEPFNYPPVPASSATQAAAGPAPLTGLDGV FTLNDDFPLNLGTFVPFNEQQLPSIFEPEPQDRELGLYDDPPIFTDPFKSSSKSRRVPPGSRVSTSTQREIKTIR PQQILLMEDRFHGRAEDALMARVNAQYRADVSVKPEPSSSTPARPRRDNVVSAPSTPLKRPLSVRESPAAKTPAA KTATVKTEVIESISSYSRASRYIAPLPRRASVKRTPSSTLPFLYPQPEFVNSPISSSASLSHLDSDYEFHRDDDD SDFLPSASSSPRKKQKRAGGYHLQERKGKKTQLQIVLEDLPFTLNDILYANGLYHCPFSTCGQTTTSEGDLGRHL ESSIHATHRYICLAPQCLSDFAREDSMKRHHGNNRGRNHKADHDRLVRQGFAFRVKIKDVSAVKEQIKALQVNPI QAPSAA |
| Length | 456 |
| Sequence id | CopciAB_467166.T0 |
|---|---|
| Sequence |
>CopciAB_467166.T0 ATGGCAGAATGCAATCAATCGGAATTCGTCGACGAGTGGGATGCCCTTAGCGCCGCGCTTTTCCTCCCTCCTCTC GACCTCTACGGGGATTTTGTCTGGCTCCCATCCTCCGAATATGGCGACAACGCGGCGACCCTGGAGCCATTCAAC TATCCTCCCGTCCCTGCGTCCTCCGCAACCCAGGCCGCAGCTGGCCCTGCGCCTTTGACCGGCCTTGATGGCGTC TTCACTTTGAATGACGACTTCCCTTTAAACCTCGGCACCTTCGTTCCTTTCAACGAGCAGCAACTTCCGTCAATC TTCGAGCCTGAGCCTCAAGACCGGGAACTCGGATTGTACGATGACCCTCCCATCTTCACCGACCCCTTTAAATCT TCAAGCAAGTCGCGTCGCGTGCCACCTGGTTCACGCGTGTCAACTTCGACACAAAGGGAGATCAAGACCATCAGG CCCCAACAGATCTTGCTCATGGAGGATCGGTTCCACGGGCGAGCAGAGGACGCGTTGATGGCACGGGTGAACGCT CAGTATCGTGCGGACGTCTCGGTCAAGCCTGAACCATCCTCTTCAACCCCTGCTCGTCCTCGTAGGGACAATGTC GTCTCAGCTCCCTCTACCCCTTTGAAAAGGCCCTTGTCTGTGCGCGAGTCACCTGCGGCCAAGACACCTGCGGCC AAGACGGCTACTGTCAAGACAGAAGTCATCGAGTCGATCTCATCCTATTCTCGCGCCTCACGTTATATCGCGCCT CTGCCTCGCCGAGCCAGCGTCAAGCGAACTCCTTCCTCCACACTCCCTTTCCTCTACCCACAGCCGGAATTTGTC AACAGTCCTATCTCATCATCCGCATCGTTATCTCACCTCGACTCGGATTACGAGTTCCACCGCGACGACGACGAC AGCGACTTCCTCCCTTCCGCCTCCTCCAGTCCCAGGAAGAAGCAAAAGCGCGCCGGCGGCTACCACTTGCAAGAG CGGAAGGGCAAGAAGACACAACTCCAAATCGTATTAGAAGACCTTCCTTTCACTCTAAACGACATCCTTTACGCC AATGGCCTTTACCACTGTCCTTTCAGCACCTGCGGTCAGACTACCACCAGTGAGGGTGACCTTGGTCGACACCTC GAATCCAGCATCCACGCAACCCATCGATACATTTGCCTTGCACCTCAATGCCTCAGCGACTTTGCTCGTGAAGAC TCCATGAAGCGCCATCACGGTAACAATCGGGGCAGGAACCACAAGGCTGACCACGATCGTCTCGTGCGACAAGGA TTCGCGTTTAGGGTCAAGATCAAGGATGTATCAGCCGTCAAAGAGCAAATCAAGGCTCTTCAAGTTAACCCAATC CAAGCTCCCTCTGCTGCTTGA |
| Length | 1371 |
| Sequence id | CopciAB_467166.T0 |
|---|---|
| Sequence |
>CopciAB_467166.T0 GGTCTTCCATCATCGTTTAGGCTCTGGTATTGAGGCCAAATTCCTGCAGTCAACATACAACGAAATATTGATCTT TTCTTTTCAACAGATCACCTAAAGAGCAGATGTCGATCTCAGAAGTGAAAAGCTTTGACAACCCTCCTTTCAGAA ACCCAACAAAGCGACCGCGTGGCTTCCGGCTGGCCTTTTGCGGAAACCAGGTTCTTTGGCTTGGAAGCGATTTCG TTTCTACACCAGCTTTGAGAGCGAAGGTTTATTCAGCGACGAAAGTAACGTATTCGGCGTTTTGACGACCTCTTC ATGACGGCCTCAAAGGCGGCAGCCACCGGGCACAATGCCTCTAGAATTTGGAGGATCCTAAAAGGGACTAGCTGC GACCTCGTGGTTTGGATTGAAGTGGTTTTGGACAAAGGGCCTTTATGTCCACTTCCCCTTCAGCATTTTTCCAAC GTCACTAACCTAGAAGTTCTATCAGTATGCCCTTTGAGTTCACTATCGCCTCCGGCGTGTAGATAAATTGACTCG ACGAGACTTGATCAACAACCTTTAGAGCCTCGGTCTGCCCGTCTTTCCTTCTCTTCGTTCTTCTACTCTTACTTC TTCTACACCTTCACCTGCTAATTTCTTTTATATTAACCTTATTCTCGGTTGCGCGGACATGGCAGAATGCAATCA ATCGGAATTCGTCGACGAGTGGGATGCCCTTAGCGCCGCGCTTTTCCTCCCTCCTCTCGACCTCTACGGGGATTT TGTCTGGCTCCCATCCTCCGAATATGGCGACAACGCGGCGACCCTGGAGCCATTCAACTATCCTCCCGTCCCTGC GTCCTCCGCAACCCAGGCCGCAGCTGGCCCTGCGCCTTTGACCGGCCTTGATGGCGTCTTCACTTTGAATGACGA CTTCCCTTTAAACCTCGGCACCTTCGTTCCTTTCAACGAGCAGCAACTTCCGTCAATCTTCGAGCCTGAGCCTCA AGACCGGGAACTCGGATTGTACGATGACCCTCCCATCTTCACCGACCCCTTTAAATCTTCAAGCAAGTCGCGTCG CGTGCCACCTGGTTCACGCGTGTCAACTTCGACACAAAGGGAGATCAAGACCATCAGGCCCCAACAGATCTTGCT CATGGAGGATCGGTTCCACGGGCGAGCAGAGGACGCGTTGATGGCACGGGTGAACGCTCAGTATCGTGCGGACGT CTCGGTCAAGCCTGAACCATCCTCTTCAACCCCTGCTCGTCCTCGTAGGGACAATGTCGTCTCAGCTCCCTCTAC CCCTTTGAAAAGGCCCTTGTCTGTGCGCGAGTCACCTGCGGCCAAGACACCTGCGGCCAAGACGGCTACTGTCAA GACAGAAGTCATCGAGTCGATCTCATCCTATTCTCGCGCCTCACGTTATATCGCGCCTCTGCCTCGCCGAGCCAG CGTCAAGCGAACTCCTTCCTCCACACTCCCTTTCCTCTACCCACAGCCGGAATTTGTCAACAGTCCTATCTCATC ATCCGCATCGTTATCTCACCTCGACTCGGATTACGAGTTCCACCGCGACGACGACGACAGCGACTTCCTCCCTTC CGCCTCCTCCAGTCCCAGGAAGAAGCAAAAGCGCGCCGGCGGCTACCACTTGCAAGAGCGGAAGGGCAAGAAGAC ACAACTCCAAATCGTATTAGAAGACCTTCCTTTCACTCTAAACGACATCCTTTACGCCAATGGCCTTTACCACTG TCCTTTCAGCACCTGCGGTCAGACTACCACCAGTGAGGGTGACCTTGGTCGACACCTCGAATCCAGCATCCACGC AACCCATCGATACATTTGCCTTGCACCTCAATGCCTCAGCGACTTTGCTCGTGAAGACTCCATGAAGCGCCATCA CGGTAACAATCGGGGCAGGAACCACAAGGCTGACCACGATCGTCTCGTGCGACAAGGATTCGCGTTTAGGGTCAA GATCAAGGATGTATCAGCCGTCAAAGAGCAAATCAAGGCTCTTCAAGTTAACCCAATCCAAGCTCCCTCTGCTGC TTGATTCAACACTCGTTTCGTTTCATATCTCTTCCCTTTACTTTCCGCTTCAAATTCGTTCGTCCAACGTTTTAC GGCCGTGTAGACCATCGTCACGAAACATTCACGATCCTTGACGTTTCCCTTAGACTTTTCGTTGTTCAAAGCCTG ACCTGTATTTTTAGAATTCAAAACATCATCGTGTATTATTAGTTAGGAAAAGTCACTGCAATTGTATCATAGCAA GCGATGTAACGTATCGTGCATATTCGAATAAACTACCTAGTGGACATGAAGAAA |
| Length | 2304 |
| Sequence id | CopciAB_467166.T0 |
|---|---|
| Sequence |
>CopciAB_467166.T0 GGTCTTCCATCATCGTTTAGGCTCTGGTATTGAGGCCAAATTCCTGCAGTCAACATACAACGAAATATTGATCTT TTCTTTTCAACAGATCACCTAAAGAGCAGATGTCGATCTCAGAAGTGAAAAGCTTTGACAACCCTCCTTTCAGAA ACCCAACAAAGCGACCGCGTGGCTTCCGGCTGGCCTTTTGCGGAAACCAGGTTCTTTGGCTTGGAAGCGATTTCG TTTCTACACCAGCTTTGAGAGCGAAGGTTTATTCAGCGACGAAAGTAACGTATTCGGCGTTTTGACGACCTCTTC ATGACGGCCTCAAAGGCGGCAGCCACCGGGCACAATGCCTCTAGAATTTGGAGGATCCTAAAAGGGACTAGCTGC GACCTCGTGGTTTGGATTGAAGTGGTTTTGGACAAAGGGCCTTTATGTCCACTTCCCCTTCAGCATTTTTCCAAC GTCACTAACCTAGAAGTTCTATCAGTATGCCCTTTGAGTTCACTATCGCCTCCGGCGTGTAGATAAATTGACTCG ACGAGACTTGATCAACAACCTTTAGAGCCTCGGTCTGCCCGTCTTTCCTTCTCTTCGTTCTTCTACTCTTACTTC TTCTACACCTTCACCTGCTAATTTCTTTTATATTAACCTTATTCTCGGTTGCGCGGACATGGCAGAATGCAATCA ATCGGAATTCGTCGACGAGTGGGATGCCCTTAGCGCCGCGCTTTTCCTCCCTCCTCTCGACCTCTACGGGGATTT TGTCTGGCTCCCATCCTCCGAATATGGCGACAACGCGGCGACCCTGGAGCCATTCAACTATCCTCCCGTCCCTGC GTCCTCCGCAACCCAGGCCGCAGCTGGCCCTGCGCCTTTGACCGGCCTTGATGGCGTCTTCACTTTGAATGACGA CTTCCCTTTAAACCTCGGCACCTTCGTTCCTTTCAACGAGCAGCAACTTCCGTCAATCTTCGAGCCTGAGCCTCA AGACCGGGAACTCGGATTGTACGATGACCCTCCCATCTTCACCGACCCCTTTAAATCTTCAAGCAAGTCGCGTCG CGTGCCACCTGGTTCACGCGTGTCAACTTCGACACAAAGGGAGATCAAGACCATCAGGCCCCAACAGATCTTGCT CATGGAGGATCGGTTCCACGGGCGAGCAGAGGACGCGTTGATGGCACGGGTGAACGCTCAGTATCGTGCGGACGT CTCGGTCAAGCCTGAACCATCCTCTTCAACCCCTGCTCGTCCTCGTAGGGACAATGTCGTCTCAGCTCCCTCTAC CCCTTTGAAAAGGTGTGTATCAGTCCTCACTAATAGTCACTTTTATTCACACATTTCCTAGGCCCTTGTCTGTGC GCGAGTCACCTGCGGCCAAGACACCTGCGGCCAAGACGGCTACTGTCAAGACAGAAGTCATCGAGTCGATCTCAT CCTATTCTCGCGCCTCACGTTATATCGCGCCTCTGCCTCGCCGAGCCAGCGTCAAGCGAACTCCTTCCTCCACAC TCCCTTTCCTCTACCCACAGCCGGAATTTGTCAACAGTCCTATCTCATCATCCGCATCGTTATCTCACCTCGACT CGGATTACGAGTTCCACCGCGACGACGACGACAGCGACTTCCTCCCTTCCGCCTCCTCCAGTCCCAGGAAGAAGC AAAAGCGCGCCGGCGGCTACCACTTGCAAGAGCGGAAGGGCAAGAAGACACAACTCCAAATCGTATTAGAAGACC TTCCTTTCACTCTAAACGACATCCTTTACGCCAATGGCCTTTACCACTGTCCTTTCAGCACCTGCGGTCAGACTA CCACCAGTGAGGGTGACCTTGGTCGACACCTCGAATCCAGCATCCACGCAACCCATCGATACATTTGCCTTGCAC CTCAATGCCTCAGCGACTTTGCTCGTGAAGACTCCATGAAGCGCCATCACGGTAACAATCGGGGCAGGAACCACA AGGCTGACCACGATCGTCTCGTGCGACAAGGATTCGCGTTTAGGGTCAAGATCAAGGATGTATCAGCCGTCAAAG AGCAAATCAAGGCTCTTCAAGTTAACCCAATCCAAGCTCCCTCTGCTGCTTGATTCAACACTCGTTTCGTTTCAT ATCTCTTCCCTTTACTTTCCGCTTCAAATTCGTTCGTCCAACGTTTTACGGCCGTGTAGACCATCGTCACGAAAC ATTCACGATCCTTGACGTTTCCCTTAGACTTTTCGTTGTTCAAAGCCTGACCTGTATTTTTAGAATTCAAAACAT CATCGTGTATTATTAGTTAGGAAAAGTCACTGCAATTGTATCATAGCAAGCGATGTAACGTATCGTGCATATTCG AATAAACTACCTAGTGGACATGAAGAAA |
| Length | 2353 |