CopciAB_468487
Coprinopsis cinerea A43mutB43mut pab1-1 #326

General data

Systematic name CopciAB_468487 Strain Coprinopsis cinerea Okayama 7
Standard name - Synonyms 468487
Uniprot id Functional description protein serine/threonine/tyrosine kinase activity
Location scaffold_11:2048493..2049961 Strand +
Gene length (nt) 1469 Transcript length (nt) 1107
CDS length (nt) 1107 Protein length (aa) 368

Reciprocal best hits in model fungi

Strain name Gene / Protein name

Orthologs in mushroom models

Strain name Gene / Protein name Pident E-value Bits
0

Expression

Name Summary Attribution Assay type
Carbon metabolism Transcriptional changes along alternative morphogenetic paths of C. cinerea Xie et al. 2020 RNA-Seq
Sample Mean cpm SD cpm Se of mean
sclerotia 0 0 0
oidia 0 0 0
vegetative_mycelium 0 0 0
primordia 0 0 0
hyphal_knot 0 0 0
young_fruiting_body 0 0 0
Complex carbon sources 1 (long incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control - glucose 0 0 0
Wheat bran 0 0 0
Horse manure 0 0 0
Oak leaves 0 0 0
Hay 0 0 0
Corn stalk 0 0 0
Pectine 0 0 0
Microcrystalline cellulose 0 0 0
Xylose 0 0 0
Cellobiose 0 0 0
Lignin 0 0 0
Apple peels 0 0 0
Coprinopsis challenged with bacteria Transcriptional response to Bacillus subtilis and Escherichia coli. Kombrink et al. 2018 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control 0 0 0
Bsubtilis 0 0 0
Ecoli 0 0 0
Early development 1 Time series expression profiling of basidiospore and oidium germination Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
BS 0h 0.0165 0.0285 0.0165
BS 4h 0 0 0
BS 8h 0 0 0
BS 12h 0 0 0
Oidia 0 h 0 0 0
Oidia 18 h 0.0057 0.0099 0.0057
Sclerotia 0 0 0
Early development 2 Time series expression profiling of mycelial growth, light induction and fruiting body initiation. Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
DM 12h 0 0 0
DM 36h 0 0 0
DM 60h 0 0 0
DM 84h 0.006 0.0104 0.006
DM 108h 0 0 0
DM 132h 0 0 0
DM 156hAE 0.0291 0.0504 0.0291
ELI1hAE 0 0 0
ELI2hAE 0 0 0
LI2hAE 0 0 0
LI6hAE 0 0 0
LI12hAE 0 0 0
LI18hAE 0 0 0
LI 24hAE 0.0097 0.0168 0.0097
DM 156hAM 0 0 0
ELI1hAM 0.0202 0.0349 0.0202
ELI2hAM 0 0 0
LI2hAM 0.005 0.0087 0.005
LI6hAM 0.0213 0.0186 0.0107
LI12hAM 0 0 0
LI18hAM 0.0203 0.0352 0.0203
LI 24hAM 0 0 0
LI 24hHK 0.0096 0.0166 0.0096
L/D 6h 0 0 0
L/D 12h 0 0 0
L/D 18h 0.0043 0.0075 0.0043
L/D 24h 0 0 0
Fruiting body development RNA-Seq analysis of fruiting body development Krizsan et al. 2019 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Vegetative mycelium 0 0 0
Hyphal knots 0 0 0
Primordium 1 0 0 0
Primordium 2 0 0 0
Young Fruiting body cap 0 0 0
Younf fruiting body gill 0 0 0
Young fruiting body stipe 0 0 0
Mature fruiting body cap_gill 0 0 0
Mature fruiting body stipe 0 0 0
Nitrogen sources (12h incubation) Expression profiling on diverse nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Complete medium - control 0 0 0
NH4NO3 0 0 0
Proline 0 0 0
Tryptophan 0 0 0
Isoleucin 0 0 0
Arginine 0 0 0
Metionine 0 0 0
NaNO3 0 0 0
Plant biomass (12h incubation) Expression profiling on diverse plant biomasses as carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 0 0 0
Citrus peel 0 0 0
Poplar leaves 0 0 0
Typha leaves 0 0 0
Overwintered Salix leaves 0 0 0
Reed flowering 0 0 0
Tigernut 0 0 0
Energy cane 0 0 0
Guar gum 0 0 0
Apple peels 0 0 0
Cellobiose 0 0 0
Corn stalk 0 0 0
Horse manure 0 0 0
Lignin 0 0 0
Microcrystalline cellulose 0 0 0
Oak leaves 0 0 0
Pectin esterified 0 0 0
Poplar sawdust 0 0 0
Wheat bran 0 0 0
Chlamydomonas reinhardtii 0 0 0
Vertatryl alcohol 0 0 0
Furfural 0 0 0
Autoclaved mycelium 0 0 0
Simple and complex carbon and nitrogen sources Expression profiling on diverse complex carbon and nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 0 0 0
Ribose 0 0 0
Mannose 0 0 0
Fructose 0 0 0
Arabinose 0 0 0
Xylose 0 0 0
Galacturonic acid 0 0 0
Rhamnogalacturonan 0 0 0
Pectin esterified 0 0 0
Polygalacturonic acid 0 0 0
Sodium acetate 0 0 0
No nitrogen 0 0 0
BSA 0 0 0
Glutamine 0 0 0
No phosphate 0 0 0
No carbon 0 0 0
No sulphur 0 0 0
Simple and complex carbon sources (12h incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 0 0 0
Amylose 0 0 0
Fucose 0 0 0
Galactose 0 0 0
Lactose 0 0 0
Maltose 0 0 0
Mannitol 0 0 0
Rhamnose 0 0 0
Sorbitol 0 0 0
Trehalose 0 0 0
Glycerol 0 0 0
Glucuronic acid 0 0 0
Arabinan 0 0 0
Galactan 0 0 0
Galactomannan 0 0 0
Glucan 0 0 0
Xylan 0 0 0
Xyloglucan 0 0 0
Arabinogalactan 0 0 0
Pectin 0 0 0
Rhamnogalacturonan 0 0 0
Polygalacturonic acid 0 0 0
Mannan 0 0 0
Amylopectin 0 0 0
Inulin 0 0 0
BSA 0 0 0
Starvation induced by water agar transfer Expression profiling on starvation induced by transfer to water agar Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Control 0 0 0
2h WAT 0 0 0
4h WAT 0 0 0
8h WAT 0 0 0
16h WAT 0 0 0
24h WAT 0 0 0
WAT hyphal knot -30h 0.0158 0.0274 0.0158
WAT hyphal knot -22h 0.0094 0.0163 0.0094
WAT hyphal knot -15h 0.0405 0.0701 0.0405
WAT hyphal knot -7.5h 0.0663 0.1148 0.0663
WAT hyphal knot 0 0 0
WAT hyphal knot +7.5h 0 0 0
Straw time series Time series expression profiling on straw as a carbon source Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 0 0 0
Straw 3h 0 0 0
Straw 6h 0 0 0
Straw 12h 0 0 0
Straw 24h 0 0 0
Stress conditions 1 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 0 0 0
Frost (-20C, 30min) 0 0 0
Heat shock (47C, 2h) 0 0 0
High CO2 0 0 0
Drought (4% agar, 12h) 0 0 0
Oxidative (1mM H2O2, 3h) 0.018 0.0311 0.018
Acidic (pH4, 3h) 0 0 0
Alkaline (pH9, 3h) 0 0 0
Osmotic (sorbitol 2h) 0.0065 0.0112 0.0065
CongoRed (3h) 0.0112 0.0194 0.0112
Cobalt chloride control 0 0 0
Cobalt chloride 2mM 0.0055 0.0095 0.0055
Stress conditions 2 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 0.3611 0.5748 0.3319
Cold stimulation 0 0 0
Scratched surface 0 0 0
Ca2+, 200mM, 24h 0 0 0
Cu2+, 2mM, 6h 0 0 0
Voriconazole 0.0584 0.1012 0.0584
Trichoderma interaction, early 0 0 0
Trichoderma interaction 60h 0.1692 0.2931 0.1692
Cobalt chloride 2mM repeat 0 0 0
Hypoxia 0 0 0
Hypoxia control 0 0 0
Protoplastation control 0 0 0
Protoplastation 3.5h 0 0 0
Protoplastation 1.5h 0 0 0

General data

Systematic name -
Protein id CopciAB_468487.T0
Description protein serine/threonine/tyrosine kinase activity

Annotation summary

0 100 200 300 368

Conserved domains

Analysis Signature accession Signature description InterPro Accession Start End
Pfam PF00069 Protein kinase domain IPR000719 63 364

SignalP

Prediction Start End Score
No records

Transmembrane domains

Domain n Start End Length
No records

InterPro

Accession Description
IPR000719 Protein kinase domain
IPR011009 Protein kinase-like domain superfamily

GO

Go id Term Ontology
GO:0004672 protein kinase activity MF
GO:0005524 ATP binding MF
GO:0006468 protein phosphorylation BP

KEGG

KEGG Orthology
K08287
K08823
K18669

EggNOG

COG category Description
Q protein serine/threonine/tyrosine kinase activity

CAZy

Class Family Subfamily
No records

Transcription factor

Group
No records

Conservation of CopciAB_468487 across fungi.

Arrow shows the origin of gene family containing CopciAB_468487.

Protein

Sequence id CopciAB_468487.T0
Sequence >CopciAB_468487.T0
MRPEGSEHTPTVITRAGQGKPSLATTVYNGAVTLRRIEIGDFLDKKFCVYQLGSFSGPCQTIRAREIRTGRSLLL
RAIRKSSVLPDALFKDLQAVEVVSKAEDHFVRFTRLFQTELDTFLVFEDEGVPLSSIIRNNNIATFSPRQVREIV
WQTANALDFLHSHGITHGDLCPSNIKLSSIATVQEVYFDWESRSFDTRKVLKSTELRVCFFGSLGVDNRSRNHDR
FRSPEVVAGIGVDYKTDIFSLGCLMKELIINRPFLYDCMDSMFYVRDKLWVMENILGSFPQELAETIEAKHAGVF
TPWWRVATSSEDHFDDKIVEFVGDSDTLPELIRDRDALEVIRSMTAYRPSDRPSIWVLTSADYFRTEF
Length 368

Coding

Sequence id CopciAB_468487.T0
Sequence >CopciAB_468487.T0
ATGAGACCTGAAGGGAGTGAACACACTCCTACTGTTATAACTAGGGCGGGCCAAGGCAAGCCCTCGTTGGCAACA
ACTGTGTACAATGGGGCTGTCACACTGAGAAGGATTGAGATAGGTGACTTCCTGGACAAGAAATTTTGCGTCTAC
CAATTAGGTTCTTTCTCGGGGCCATGCCAGACTATAAGGGCTCGCGAGATACGGACTGGTCGGTCCTTGCTTTTG
CGAGCCATTCGGAAATCGAGTGTCCTTCCGGATGCTCTGTTCAAGGACCTCCAGGCAGTAGAAGTCGTGTCAAAG
GCGGAAGACCATTTTGTGCGGTTCACTCGGCTCTTCCAGACCGAGTTAGATACCTTCTTAGTATTCGAAGATGAA
GGAGTACCGTTATCTTCTATCATCCGAAACAATAATATAGCAACATTCTCACCCCGGCAAGTACGCGAAATTGTT
TGGCAAACCGCAAACGCGTTGGACTTCTTACACTCCCATGGTATAACCCACGGCGATCTTTGTCCTTCCAACATC
AAGTTGTCGAGTATCGCCACTGTCCAAGAAGTATACTTCGACTGGGAAAGTCGCTCCTTCGACACTCGGAAAGTA
CTGAAGTCCACCGAGCTTCGAGTATGTTTCTTCGGTTCTCTTGGGGTCGACAACCGCTCCAGGAATCACGATCGT
TTTCGTTCCCCTGAGGTTGTAGCGGGCATTGGCGTTGACTACAAGACGGATATTTTCTCTCTGGGATGCTTGATG
AAGGAGTTGATTATCAATCGACCATTCCTTTACGACTGCATGGATTCGATGTTCTACGTCCGAGACAAGCTGTGG
GTCATGGAGAATATCCTGGGTAGTTTCCCCCAAGAGCTTGCAGAGACGATTGAGGCGAAACACGCGGGAGTCTTC
ACACCCTGGTGGCGTGTTGCCACTAGCAGTGAAGATCATTTCGACGACAAGATTGTGGAATTCGTGGGAGATAGC
GATACACTACCGGAATTGATTCGGGATAGGGATGCTCTAGAAGTCATCCGATCTATGACAGCCTATAGGCCCAGC
GACAGGCCATCAATATGGGTTCTCACAAGCGCAGACTACTTCAGGACAGAATTCTAG
Length 1107

Transcript

Sequence id CopciAB_468487.T0
Sequence >CopciAB_468487.T0
ATGAGACCTGAAGGGAGTGAACACACTCCTACTGTTATAACTAGGGCGGGCCAAGGCAAGCCCTCGTTGGCAACA
ACTGTGTACAATGGGGCTGTCACACTGAGAAGGATTGAGATAGGTGACTTCCTGGACAAGAAATTTTGCGTCTAC
CAATTAGGTTCTTTCTCGGGGCCATGCCAGACTATAAGGGCTCGCGAGATACGGACTGGTCGGTCCTTGCTTTTG
CGAGCCATTCGGAAATCGAGTGTCCTTCCGGATGCTCTGTTCAAGGACCTCCAGGCAGTAGAAGTCGTGTCAAAG
GCGGAAGACCATTTTGTGCGGTTCACTCGGCTCTTCCAGACCGAGTTAGATACCTTCTTAGTATTCGAAGATGAA
GGAGTACCGTTATCTTCTATCATCCGAAACAATAATATAGCAACATTCTCACCCCGGCAAGTACGCGAAATTGTT
TGGCAAACCGCAAACGCGTTGGACTTCTTACACTCCCATGGTATAACCCACGGCGATCTTTGTCCTTCCAACATC
AAGTTGTCGAGTATCGCCACTGTCCAAGAAGTATACTTCGACTGGGAAAGTCGCTCCTTCGACACTCGGAAAGTA
CTGAAGTCCACCGAGCTTCGAGTATGTTTCTTCGGTTCTCTTGGGGTCGACAACCGCTCCAGGAATCACGATCGT
TTTCGTTCCCCTGAGGTTGTAGCGGGCATTGGCGTTGACTACAAGACGGATATTTTCTCTCTGGGATGCTTGATG
AAGGAGTTGATTATCAATCGACCATTCCTTTACGACTGCATGGATTCGATGTTCTACGTCCGAGACAAGCTGTGG
GTCATGGAGAATATCCTGGGTAGTTTCCCCCAAGAGCTTGCAGAGACGATTGAGGCGAAACACGCGGGAGTCTTC
ACACCCTGGTGGCGTGTTGCCACTAGCAGTGAAGATCATTTCGACGACAAGATTGTGGAATTCGTGGGAGATAGC
GATACACTACCGGAATTGATTCGGGATAGGGATGCTCTAGAAGTCATCCGATCTATGACAGCCTATAGGCCCAGC
GACAGGCCATCAATATGGGTTCTCACAAGCGCAGACTACTTCAGGACAGAATTCTAG
Length 1107

Gene

Sequence id CopciAB_468487.T0
Sequence >CopciAB_468487.T0
ATGAGACCTGAAGGGAGTGAACACACTCCTACTGTTATAACTAGGGCGGGCCAAGGCAAGCCCTCGTTGGCAACA
ACTGTGTACAATGGGGTGAGTCACCTGCGCCTTCACCAGTTGATGGGAGACTTAAGGCTGTCACACTGAGAAGGA
TTGAGATAGGTGACTTCCTGGACAAGAAATGTAAGTGAACGAGATTACCAGGCGTCCAATACCTTGGCTCATCGT
TCCCTTAGTTTGCGTCTACCAATTAGGTTCTTTCTCGGGGCCATGCCAGACTATAAGGGCTCGCGAGATACGGAC
TGGTCGGTCCTTGCTTTTGCGAGCCATTCGGAAATCGAGTGTCCTTCCGGATGCTCTGTTCAAGGACCTCCAGGC
AGTAGAAGTCGTGTCAAAGGCGGAAGAGTGAGTACACCTGCCCTTCATATTTCACCTCCACCTAATAAGAACAAG
CCATTTTGTGCGGTTCACTCGGCTCTTCCAGACCGAGTTAGATACCTTCTTAGTATTCGAAGATGAAGGAGTACC
GTTATCTTCTATCATCCGAAACAATAATATAGCAACATTCTCACCCCGGCAAGTACGCGAAATTGTTTGGCAAAC
CGCAAACGCGTTGGACTGTGAGTAATTCATGCTTCGGTTGTTTTGATGCATTGAACCCAATCTTTCGCGGACCTA
GTCTTACACTCCCATGGTATAACCCACGGCGATCTTTGTCCTTCCAACATCAAGTTGTCGAGTATCGCCACTGTC
CAAGAAGTATACTTCGACTGGGAAAGTCGCTCCTTCGACACTCGGGTCCGTCTTATGTTTTATGGTCACGTAGAG
ATGCTGAGACGGAGACGAATGTTCATTTAGAAAGTACTGAAGTCCACCGAGCTTCGAGTATGTTTCTTCGGTTCT
CTTGGGGTCGACAACCGCTCCAGGAATCACGATCGTTTTCGTTCCCCTGAGGTTGTAGCGGGTATGTAATAGTCC
AACGTAACTCATATTTGTTCTCATCCTCTGCAGGCATTGGCGTTGACTACAAGACGGATATTTTCTCTCTGGGAT
GCTTGATGAAGGAGTTGATTATCAATCGACCATTCCTTTACGACTGCATGGATTCGATGTTCTACGTCCGAGACA
AGCTGTGGGTCATGGAGAATATCCTGGGTAGTTTCCCCCAAGAGCTTGCAGAGACGATTGAGGCGAAACACGCGG
GAGTCTTCACACCCTGGTGGCGTGTTGCCACTAGCAGTGAAGATCATTTCGACGACAAGATTGTGGAATTCGTGG
GAGATAGCGATACACTACCGGTGCGTATTTGGCATTAGAGACACTGCATACAAGTATCTCAGAACCCGCCCCAGG
AATTGATTCGGGATAGGGATGCTCTAGAAGTCATCCGATCTATGACAGCCTATAGGCCCAGCGACAGGCCATCAA
TATGGGTTCTCACAAGCGCAGACTACTTCAGGACAGAATTCTAG
Length 1469