Systematic name | CopciAB_493319 | Strain | Coprinopsis cinerea Okayama 7 |
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Standard name | - | Synonyms | 493319 |
Uniprot id | Functional description | Belongs to the glycosyl hydrolase 5 (cellulase A) family | |
Location | scaffold_4:1397419..1399282 | Strand | + |
Gene length (nt) | 1864 | Transcript length (nt) | 1352 |
CDS length (nt) | 1164 | Protein length (aa) | 387 |
Strain name | Gene / Protein name |
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Strain name | Gene / Protein name | Pident | E-value | Bits |
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Name | Summary | Attribution | Assay type | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Carbon metabolism | Transcriptional changes along alternative morphogenetic paths of C. cinerea | Xie et al. 2020 | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Complex carbon sources 1 (long incubation) | Expression profiling on diverse complex carbon sources. | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Coprinopsis challenged with bacteria | Transcriptional response to Bacillus subtilis and Escherichia coli. | Kombrink et al. 2018 | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Early development 1 | Time series expression profiling of basidiospore and oidium germination | Hegedus et al. | QuantSeq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Early development 2 | Time series expression profiling of mycelial growth, light induction and fruiting body initiation. | Hegedus et al. | QuantSeq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Fruiting body development | RNA-Seq analysis of fruiting body development | Krizsan et al. 2019 | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Nitrogen sources (12h incubation) | Expression profiling on diverse nitrogen sources. | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Plant biomass (12h incubation) | Expression profiling on diverse plant biomasses as carbon sources. | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Simple and complex carbon and nitrogen sources | Expression profiling on diverse complex carbon and nitrogen sources. | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Simple and complex carbon sources (12h incubation) | Expression profiling on diverse complex carbon sources. | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Starvation induced by water agar transfer | Expression profiling on starvation induced by transfer to water agar | Hegedus et al. | QuantSeq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Straw time series | Time series expression profiling on straw as a carbon source | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Stress conditions 1 | Expression profiling under various stress conditions | Hegedus et al. | QuantSeq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Stress conditions 2 | Expression profiling under various stress conditions | Hegedus et al. | QuantSeq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Systematic name | - |
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Protein id | CopciAB_493319.T0 |
Description | Belongs to the glycosyl hydrolase 5 (cellulase A) family |
Analysis | Signature accession | Signature description | InterPro Accession | Start | End |
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Pfam | PF00150 | Cellulase (glycosyl hydrolase family 5) | IPR001547 | 41 | 296 |
Prediction | Start | End | Score |
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SP(Sec/SPI) | 1 | 19 | 0.9989 |
Domain n | Start | End | Length |
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No records |
Accession | Description |
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IPR045053 | Mannan endo-1,4-beta-mannosidase-like |
IPR017853 | Glycoside hydrolase superfamily |
IPR001547 | Glycoside hydrolase, family 5 |
Go id | Term | Ontology |
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GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | MF |
GO:0071704 | organic substance metabolic process | BP |
KEGG Orthology |
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K19355 |
COG category | Description |
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G | Belongs to the glycosyl hydrolase 5 (cellulase A) family |
Class | Family | Subfamily |
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GH | GH5 | GH5_7 |
Group |
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No records |
Arrow shows the origin of gene family containing CopciAB_493319.
Sequence id | CopciAB_493319.T0 |
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Sequence |
>CopciAB_493319.T0 MKFLLALLSAICLFQMASAAAISRRAPGFVQTDGTYFSLDGYKYTVVGANAYWISQAGLSDADMDKSFADIASMG ATTVRVWGFNEMAEEHIAENGIYYQLWRGNKAVVNYSASGLGYFDRVIASARKHNLRLIVVLTSNYNLDWVVGGA GTYMDQVLGPNRRQTNDAFFTHPEIKDIFKNYVSAIVSRYKDEKTIMSWELGHQLKCAVSWNPRNPQCNPEIITE WIKEMSSHIKSIDSNHLVAVGDEGFFNRPNSNGRYVYTGRDGMDFEANSALNTIDYATFAYRPASYEMPTHSKEP LEWIDAHGKSQERLQKPVLLVDLGSEIRPHWLDQIVESGIAGTLYWQAGTEGIKLNMPYWFRGDYISLSSDIAKD IKKHFEALKRRP |
Length | 387 |
Sequence id | CopciAB_493319.T0 |
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Sequence |
>CopciAB_493319.T0 ATGAAGTTCCTATTAGCTCTCCTCTCGGCGATCTGCCTCTTCCAAATGGCTTCTGCCGCTGCTATCTCTCGTCGA GCACCAGGATTCGTCCAGACTGACGGGACGTATTTCTCGCTCGATGGCTATAAATACACCGTTGTGGGAGCCAAT GCGTATTGGATTAGCCAGGCGGGTCTCAGTGACGCCGACATGGACAAGTCCTTCGCAGATATTGCCAGTATGGGA GCAACCACCGTTCGCGTCTGGGGATTCAACGAGATGGCTGAAGAGCACATCGCTGAAAATGGCATTTACTATCAA CTCTGGCGCGGAAACAAGGCTGTAGTGAACTACAGCGCCAGCGGCTTGGGATACTTCGACCGTGTCATTGCCAGT GCTCGCAAGCACAACCTCCGTCTGATCGTTGTCCTTACTAGCAACTATAACCTAGATTGGGTTGTCGGCGGTGCT GGTACCTACATGGATCAGGTCCTTGGCCCGAACCGCCGCCAGACCAACGATGCATTCTTCACTCACCCCGAGATC AAGGATATCTTCAAGAACTATGTTAGTGCCATCGTAAGCAGGTATAAGGACGAGAAGACCATCATGTCCTGGGAA CTCGGGCACCAGTTGAAGTGCGCGGTGTCTTGGAACCCCAGGAATCCCCAATGCAACCCAGAAATCATTACCGAA TGGATCAAGGAGATGTCCTCTCACATCAAGTCCATCGATTCCAACCACCTCGTGGCTGTTGGAGACGAAGGCTTC TTCAACAGGCCTAACAGCAACGGCCGCTACGTCTACACTGGCAGGGATGGAATGGATTTCGAGGCTAACTCTGCT CTCAACACCATCGATTACGCTACTTTCGCATACCGCCCCGCCTCTTATGAGATGCCGACTCATTCCAAGGAGCCA TTGGAATGGATCGATGCTCACGGAAAGTCTCAGGAGCGCCTCCAGAAGCCCGTCCTCTTGGTCGATCTGGGAAGT GAAATCCGCCCTCACTGGCTTGACCAAATCGTCGAGTCCGGAATTGCCGGAACACTCTACTGGCAAGCCGGAACC GAAGGCATTAAGCTCAACATGCCATACTGGTTCAGGGGCGACTACATTAGCCTCTCCTCTGACATCGCCAAGGAT ATCAAGAAGCACTTCGAGGCTCTCAAGAGGCGACCATGA |
Length | 1164 |
Sequence id | CopciAB_493319.T0 |
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Sequence |
>CopciAB_493319.T0 AGCTCACCGCAACGATGAAGTTCCTATTAGCTCTCCTCTCGGCGATCTGCCTCTTCCAAATGGCTTCTGCCGCTG CTATCTCTCGTCGAGCACCAGGATTCGTCCAGACTGACGGGACGTATTTCTCGCTCGATGGCTATAAATACACCG TTGTGGGAGCCAATGCGTATTGGATTAGCCAGGCGGGTCTCAGTGACGCCGACATGGACAAGTCCTTCGCAGATA TTGCCAGTATGGGAGCAACCACCGTTCGCGTCTGGGGATTCAACGAGATGGCTGAAGAGCACATCGCTGAAAATG GCATTTACTATCAACTCTGGCGCGGAAACAAGGCTGTAGTGAACTACAGCGCCAGCGGCTTGGGATACTTCGACC GTGTCATTGCCAGTGCTCGCAAGCACAACCTCCGTCTGATCGTTGTCCTTACTAGCAACTATAACCTAGATTGGG TTGTCGGCGGTGCTGGTACCTACATGGATCAGGTCCTTGGCCCGAACCGCCGCCAGACCAACGATGCATTCTTCA CTCACCCCGAGATCAAGGATATCTTCAAGAACTATGTTAGTGCCATCGTAAGCAGGTATAAGGACGAGAAGACCA TCATGTCCTGGGAACTCGGGCACCAGTTGAAGTGCGCGGTGTCTTGGAACCCCAGGAATCCCCAATGCAACCCAG AAATCATTACCGAATGGATCAAGGAGATGTCCTCTCACATCAAGTCCATCGATTCCAACCACCTCGTGGCTGTTG GAGACGAAGGCTTCTTCAACAGGCCTAACAGCAACGGCCGCTACGTCTACACTGGCAGGGATGGAATGGATTTCG AGGCTAACTCTGCTCTCAACACCATCGATTACGCTACTTTCGCATACCGCCCCGCCTCTTATGAGATGCCGACTC ATTCCAAGGAGCCATTGGAATGGATCGATGCTCACGGAAAGTCTCAGGAGCGCCTCCAGAAGCCCGTCCTCTTGG TCGATCTGGGAAGTGAAATCCGCCCTCACTGGCTTGACCAAATCGTCGAGTCCGGAATTGCCGGAACACTCTACT GGCAAGCCGGAACCGAAGGCATTAAGCTCAACATGCCATACTGGTTCAGGGGCGACTACATTAGCCTCTCCTCTG ACATCGCCAAGGATATCAAGAAGCACTTCGAGGCTCTCAAGAGGCGACCATGAAAAACGATTAACGACCGGCTTC CGCATGATACCTCTCATGAAGTAGACTTGACCACCTTTGTATCAATATTGCTTTCGATTTTCGATGACTGTTGAA ACCCTTTAGCCTGTAGTATAGTCTCCCGATTTTGTATGGCACTGCTTAAAAGAACAAAATCCATATATTCGTTAC AG |
Length | 1352 |
Sequence id | CopciAB_493319.T0 |
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Sequence |
>CopciAB_493319.T0 AGCTCACCGCAACGATGAAGTTCCTATTAGCTCTCCTCTCGGCGATCTGCCTCTTCCAAATGGCTTCTGCCGCTG CTATCTCTCGTCGAGCACCAGGATTCGTCCAGACTGACGGGACGTATTTCTCGCTCGATGGCTATAAATACACCG TTGTGGGGTACGTGGACTGCGCCCCGCCGACGTTCTCTGTTGCTAACGCCGCCTTGTAACAGAGCCAATGCGTAT TGGATTAGCCAGGCGGGTCTCAGTGACGCCGACATGGACAAGTCCTTCGCAGATATTGCCAGTATGGGAGCAACC ACCGTTCGCGTCTGGTCGGTGGCCCGGAAGTCTCTTTGGCTGCATGTTGCATACTCACATCATTGACTTGCTTCA GGGGATTCAACGAGATGGCTGAAGAGCACATCGCTGAAAATGGCATTTACTATCAACTCTGGCGCGGAAACAAGG CTGTAGTGAACTACAGCGCCAGCGGCTTGGGATACTTCGGTAAGTGCTCTCTCTACGACTGCCTTGAATTGCAGG CTAATGGGCATTTTAGACCGTGTCATTGCCAGTGCTCGCAAGCACAACCTCCGTCTGATCGTTGTCCTGTAAGCT TACTCACTTTACGACACTTGCTGCGATTCTGACGCGTAGGGGTGGACAGTACTAGCAACTATAACCTAGATTGGG TTGTCGGCGGTGCTGGTACCTACATGGATCAGGTCCTTGGCCCGAACCGCCGCCAGACCAACGATGCATTCTTCA CTCACCCCGAGATCAAGGTCGGATTCACATGTCTCACGAAGTGGATTGATATTGACGGTTATACTTATAGGATAT CTTCAAGAACTATGTTAGTGCCATCGTAAGCAGGTATAAGGACGAGAAGACCATCATGTCCTGGGAACTCGGGCA CCAGTTGAAGTGCGCGGTGTCTTGGAAGTAAGTCGAGCTGATAGCCATCTTATGTAGCTCGAGAACCGACATTAA TCCACTCTGGGACTGTCAGCCCCAGGAATCCCCAATGCAACCCAGAAATCATTACCGAATGGATCAAGGAGATGT CCTCTCACATCAAGTCCATCGATTCCAACCACCTCGTGGCTGTTGGAGACGAAGGCTTCTTCAACAGGCCTAACA GCAACGGCCGCTACGTCTACACGTAAGTTCGAGTCGTAGAGGGTAAATCTAGAACTGAGGACTGATCGGTGGACC TGCAGTGGCAGGGATGGAATGGATTTCGAGGCTAACTCTGCTCTCAACACCATCGATTACGCTACTTTCGCAGTG AGTGTATCCTCGAAATGCTAGACCCGGTCCTTGCTGACGCCATGAATAGTACCGCCCCGCCTCTTATGAGATGCC GACTCATTCCAAGGAGCCATTGGAATGGATCGATGCTCACGGAAAGTCTCAGGAGCGCCTCCAGAAGCCCGTCCT CTTGGTCGATCTGGGAAGTGAAATCCGCCCTCACTGGCTTGACCAAATCGTCGAGTCCGGAATTGCCGGAACACT CTACTGGCAAGCCGGAACCGAAGGCATTAAGCTGTACGTTTTATCCCTCTATCACCAGGCTCCAACGAGAGACTA ACGAAGTTTCTCCAGCAACATGCCATACTGGTTCAGGGGCGACTACATTAGCCTCTCCTCTGACATCGCCAAGGA TATCAAGAAGCACTTCGAGGCTCTCAAGAGGCGACCATGAAAAACGATTAACGACCGGCTTCCGCATGATACCTC TCATGAAGTAGACTTGACCACCTTTGTATCAATATTGCTTTCGATTTTCGATGACTGTTGAAACCCTTTAGCCTG TAGTATAGTCTCCCGATTTTGTATGGCACTGCTTAAAAGAACAAAATCCATATATTCGTTACAG |
Length | 1864 |