Systematic name | CopciAB_493627 | Strain | Coprinopsis cinerea Okayama 7 |
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Standard name | - | Synonyms | 493627 |
Uniprot id | Functional description | Homeodomain | |
Location | scaffold_4:1875047..1876866 | Strand | + |
Gene length (nt) | 1820 | Transcript length (nt) | 1582 |
CDS length (nt) | 1161 | Protein length (aa) | 386 |
Strain name | Gene / Protein name |
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Strain name | Gene / Protein name | Pident | E-value | Bits |
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Agrocybe aegerita | Agrae_CAA7261664 | 52.7 | 4.807E-111 | 361 |
Hypsizygus marmoreus strain 51987-8 | Hypma_RDB25181 | 47.4 | 4.22E-94 | 312 |
Agaricus bisporus var bisporus (H97) | Agabi_varbisH97_2_192433 | 49.8 | 1.624E-90 | 301 |
Agaricus bisporus var. burnettii JB137-S8 | Agabi_varbur_1_112464 | 49.8 | 1.692E-90 | 301 |
Pleurotus ostreatus PC9 | PleosPC9_1_84519 | 43.5 | 1.096E-75 | 258 |
Pleurotus ostreatus PC15 | PleosPC15_2_1112690 | 43.3 | 2.465E-75 | 257 |
Pleurotus eryngii ATCC 90797 | Pleery1_1438647 | 43.1 | 6.387E-75 | 256 |
Lentinula edodes W1-26 v1.0 | Lentinedodes1_16333 | 43 | 7.646E-72 | 247 |
Lentinula edodes NBRC 111202 | Lenedo1_1171205 | 41 | 5.694E-64 | 224 |
Flammulina velutipes | Flave_chr07AA00573 | 38.5 | 1.83E-54 | 196 |
Schizophyllum commune H4-8 | Schco3_2632356 | 37.9 | 3.445E-41 | 157 |
Ganoderma sp. 10597 SS1 v1.0 | Gansp1_127053 | 33 | 6.207E-39 | 150 |
Grifola frondosa | Grifr_OBZ68006 | 33.4 | 6.01E-31 | 126 |
Lentinula edodes B17 | Lened_B_1_1_2729 | 80.5 | 2.159E-27 | 115 |
Auricularia subglabra | Aurde3_1_1274371 | 30.2 | 1.261E-19 | 92 |
Name | Summary | Attribution | Assay type | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Carbon metabolism | Transcriptional changes along alternative morphogenetic paths of C. cinerea | Xie et al. 2020 | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Complex carbon sources 1 (long incubation) | Expression profiling on diverse complex carbon sources. | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Coprinopsis challenged with bacteria | Transcriptional response to Bacillus subtilis and Escherichia coli. | Kombrink et al. 2018 | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Early development 1 | Time series expression profiling of basidiospore and oidium germination | Hegedus et al. | QuantSeq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Early development 2 | Time series expression profiling of mycelial growth, light induction and fruiting body initiation. | Hegedus et al. | QuantSeq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Fruiting body development | RNA-Seq analysis of fruiting body development | Krizsan et al. 2019 | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Nitrogen sources (12h incubation) | Expression profiling on diverse nitrogen sources. | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Plant biomass (12h incubation) | Expression profiling on diverse plant biomasses as carbon sources. | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Simple and complex carbon and nitrogen sources | Expression profiling on diverse complex carbon and nitrogen sources. | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Simple and complex carbon sources (12h incubation) | Expression profiling on diverse complex carbon sources. | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Starvation induced by water agar transfer | Expression profiling on starvation induced by transfer to water agar | Hegedus et al. | QuantSeq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Straw time series | Time series expression profiling on straw as a carbon source | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Stress conditions 1 | Expression profiling under various stress conditions | Hegedus et al. | QuantSeq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Stress conditions 2 | Expression profiling under various stress conditions | Hegedus et al. | QuantSeq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Systematic name | - |
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Protein id | CopciAB_493627.T0 |
Description | Homeodomain |
Analysis | Signature accession | Signature description | InterPro Accession | Start | End |
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CDD | cd00086 | homeodomain | IPR001356 | 243 | 301 |
Pfam | PF00046 | Homeodomain | IPR001356 | 243 | 299 |
Prediction | Start | End | Score |
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No records |
Domain n | Start | End | Length |
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No records |
Accession | Description |
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IPR001356 | Homeobox domain |
IPR017970 | Homeobox, conserved site |
IPR009057 | Homeobox-like domain superfamily |
Go id | Term | Ontology |
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GO:0003677 | DNA binding | MF |
GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific | MF |
GO:0006355 | regulation of transcription, DNA-templated | BP |
KEGG Orthology |
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K09323 |
K12411 |
COG category | Description |
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K | Homeodomain |
Class | Family | Subfamily |
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No records |
Group |
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helix-turn-helix, homeobox |
helix-turn-helix |
Arrow shows the origin of gene family containing CopciAB_493627.
Sequence id | CopciAB_493627.T0 |
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Sequence |
>CopciAB_493627.T0 MSASANKDRYYPGTIGKSRRSSPSDTQGNPFSFQTGQGPYPNAYTAPRSSPGRGYDINPQAFYPQWPTGNSPPLT PAFPNYDTTSGHLHERHSPQPTYGYTTRTTSPPPMNPTDPRRLPPLTTSSSPGGDRWQQSANYNHGMPAVHGYPS GNSIRSPTASYPSQYVTYPSGNQGTYTYMSTYDPLAMTPQGQQGLFDDIDSVGLQQPRSTSPYGRTHAQTQLSST NFTPPPVSPISPEEPTIKKKRKRADAAQLKVLNETYARTAFPSTEERQALAKRLDMSARSVQIWFQNKRQSMRQT NRQSSTVSSSGHQQQYALQSSHNERLLDDGTHGSSYGGSITLSETPYMTGSSVQDAMTRSHTSLSSSAHRRVRGP EEDAQRWPRGY |
Length | 386 |
Sequence id | CopciAB_493627.T0 |
---|---|
Sequence |
>CopciAB_493627.T0 ATGTCGGCGTCAGCAAACAAGGATCGGTACTATCCTGGTACTATAGGGAAGTCTCGTAGAAGTTCCCCTAGTGAT ACACAAGGCAATCCGTTTTCTTTCCAGACGGGACAGGGGCCCTATCCTAATGCATATACCGCGCCTCGCTCATCT CCAGGTAGAGGGTACGACATCAATCCTCAAGCGTTTTACCCCCAATGGCCGACTGGGAACTCCCCGCCACTCACC CCCGCATTCCCCAACTATGACACGACGAGCGGCCATCTCCACGAACGACACTCTCCGCAACCTACTTACGGTTAC ACTACTCGGACAACCTCGCCTCCTCCGATGAACCCTACAGATCCTCGCAGGCTCCCTCCCCTCACGACGTCGTCG AGCCCTGGTGGCGATCGATGGCAACAGTCGGCCAACTACAACCATGGTATGCCCGCTGTCCATGGCTACCCCTCC GGCAATAGCATTCGCTCGCCGACTGCGAGCTACCCTTCGCAGTATGTTACCTATCCCAGCGGTAACCAAGGTACT TACACCTATATGTCAACATACGATCCGCTCGCGATGACCCCCCAAGGCCAACAAGGCCTCTTTGACGATATCGAC TCTGTCGGACTCCAACAACCTCGATCAACCTCGCCTTATGGGCGTACCCATGCCCAAACGCAGTTGTCTTCTACC AATTTCACCCCTCCACCGGTATCGCCCATTTCCCCGGAGGAGCCCACCATCAAGAAAAAGCGCAAGCGTGCCGAC GCTGCTCAGCTCAAGGTCCTCAATGAGACCTATGCCCGCACCGCTTTCCCATCCACGGAAGAACGGCAGGCCCTT GCAAAGCGTTTGGACATGTCGGCCAGAAGTGTTCAGATTTGGTTCCAGAACAAGCGGCAGTCGATGAGGCAGACG AACCGCCAATCGTCTACCGTTTCGTCTTCTGGCCATCAACAGCAGTACGCGCTGCAGAGCTCTCACAACGAGAGG TTGTTGGACGATGGGACCCATGGATCTTCTTACGGCGGCTCTATCACTTTGTCGGAGACCCCTTACATGACAGGA AGCTCTGTGCAAGACGCGATGACACGTTCACATACCTCCCTTTCATCTTCTGCGCATCGCCGAGTGCGAGGCCCT GAAGAAGACGCTCAACGGTGGCCTCGCGGTTACTGA |
Length | 1161 |
Sequence id | CopciAB_493627.T0 |
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Sequence |
>CopciAB_493627.T0 ATTAATATCACTTCCCCTCTTCCCCGCTTCTTATTACTACTTTTCTCTTTCTCCACTAATATGTCGGCGTCAGCA AACAAGGATCGGTACTATCCTGGTACTATAGGGAAGTCTCGTAGAAGTTCCCCTAGTGATACACAAGGCAATCCG TTTTCTTTCCAGACGGGACAGGGGCCCTATCCTAATGCATATACCGCGCCTCGCTCATCTCCAGGTAGAGGGTAC GACATCAATCCTCAAGCGTTTTACCCCCAATGGCCGACTGGGAACTCCCCGCCACTCACCCCCGCATTCCCCAAC TATGACACGACGAGCGGCCATCTCCACGAACGACACTCTCCGCAACCTACTTACGGTTACACTACTCGGACAACC TCGCCTCCTCCGATGAACCCTACAGATCCTCGCAGGCTCCCTCCCCTCACGACGTCGTCGAGCCCTGGTGGCGAT CGATGGCAACAGTCGGCCAACTACAACCATGGTATGCCCGCTGTCCATGGCTACCCCTCCGGCAATAGCATTCGC TCGCCGACTGCGAGCTACCCTTCGCAGTATGTTACCTATCCCAGCGGTAACCAAGGTACTTACACCTATATGTCA ACATACGATCCGCTCGCGATGACCCCCCAAGGCCAACAAGGCCTCTTTGACGATATCGACTCTGTCGGACTCCAA CAACCTCGATCAACCTCGCCTTATGGGCGTACCCATGCCCAAACGCAGTTGTCTTCTACCAATTTCACCCCTCCA CCGGTATCGCCCATTTCCCCGGAGGAGCCCACCATCAAGAAAAAGCGCAAGCGTGCCGACGCTGCTCAGCTCAAG GTCCTCAATGAGACCTATGCCCGCACCGCTTTCCCATCCACGGAAGAACGGCAGGCCCTTGCAAAGCGTTTGGAC ATGTCGGCCAGAAGTGTTCAGATTTGGTTCCAGAACAAGCGGCAGTCGATGAGGCAGACGAACCGCCAATCGTCT ACCGTTTCGTCTTCTGGCCATCAACAGCAGTACGCGCTGCAGAGCTCTCACAACGAGAGGTTGTTGGACGATGGG ACCCATGGATCTTCTTACGGCGGCTCTATCACTTTGTCGGAGACCCCTTACATGACAGGAAGCTCTGTGCAAGAC GCGATGACACGTTCACATACCTCCCTTTCATCTTCTGCGCATCGCCGAGTGCGAGGCCCTGAAGAAGACGCTCAA CGGTGGCCTCGCGGTTACTGAGATTCAGGATGCTTGATTCACTTTTCATTCTGGGTTCGCATAGTTACATCCGCT CACAAACTTCTTCCATCGGGCTTCTTTTTATAACCATAGAGACTTTGACTCTAATTTACAGCGTCAGTATTAATT GGTTCATTAATATCTCCTACTCCTTCTACTTATTGCTCTGTCTTGACAGGGCGCGGCAGCTTTTTATTTTCTTAT TTGGCTTCATTTTATTCTCTTATCTAACGACCTCGTCATGCTTCCTATACCCACCGCACTCCCATGCAGACATGC AACATTTCTTATGGCACTTTGGATCACTCCATGTATCACACTTCTTTCTGTACTTATCCAATTCTATGCCTTATG CCCACGC |
Length | 1582 |
Sequence id | CopciAB_493627.T0 |
---|---|
Sequence |
>CopciAB_493627.T0 ATTAATATCACTTCCCCTCTTCCCCGCTTCTTATTACTACTTTTCTCTTTCTCCACTAATATGTCGGCGTCAGCA AACAAGGATCGGTACTATCCTGGTACTATAGGGAAGTCTCGTAGAAGTTCCCCTAGTGATACACAAGGCAATCCG TTTTCTTTCCAGACGGGACAGGGTGGGCGAACAGTGTTGCCTTCTTTCTCTACGGCCTTTCCAAACTTACCTTTT CCAGGTCTGTCTCTTTTTGTAGTTTTAAGCCTTCCGAAAACACTCAAACCTTCATCTTTCATCGTTACAGGGCCC TATCCTAATGCATATACCGCGCCTCGCTCATCTCCAGGTAGAGGGTACGACATCAATCCTCAAGCGTTTTACCCC CAATGGCCGACTGGGAACTGTACGTTCATTAATTTCCTTTTTTCCATGGTGTTCAAATTATCTCCATTGGCGCCA ATAGCCCCGCCACTCACCCCCGCATTCCCCAACTATGACACGACGAGCGGCCATCTCCACGAACGACACTCTCCG CAACCTACTTACGGTTACACTACTCGGACAACCTCGCCTCCTCCGATGAACCCTACAGATCCTCGCAGGCTCCCT CCCCTCACGACGTCGTCGAGCCCTGGTGGCGATCGATGGCAACAGTCGGCCAACTACAACCATGGTATGCCCGCT GTCCATGGCTACCCCTCCGGCAATAGCATTCGCTCGCCGACTGCGAGCTACCCTTCGCAGTATGTTACCTATCCC AGCGGTAACCAAGGTACTTACACCTATATGTCAACATACGATCCGCTCGCGATGACCCCCCAAGGCCAACAAGGC CTCTTTGACGATATCGACTCTGTCGGACTCCAACAACCTCGATCAACCTCGCCTTATGGGCGTACCCATGCCCAA ACGCAGTTGTCTTCTACCAATTTCACCCCTCCACCGGTATCGCCCATTTCCCCGGAGGAGCCCACCATCAAGAAA AAGCGCAAGCGTGCCGACGCTGCTCAGCTCAAGGTCCTCAATGAGACCTATGCCCGCACCGCTTTCCCATCCACG GAAGAACGGCAGGCCCTTGCAAAGCGTTTGGACATGTCGGCCAGAAGTGTTCAGATTTGGTACGTCATCATGGTG CCTTATATATTTTTGCCATCCGTATTAACAAGGATCCAGGTTCCAGAACAAGCGGCAGTCGATGAGGCAGACGAA CCGCCAATCGTCTACCGTTTCGTCTTCTGGCCATCAACAGCAGTACGCGCTGCAGAGCTCTCACAACGAGAGGTT GTTGGACGATGGGACCCATGGATCTTCTTACGGCGGCTCTATCACTTTGTCGGAGACCCCTTACATGACAGGAAG CTCTGTGCAAGACGCGATGACACGTTCACATACCTCCCTTTCATCTTCTGCGCATCGCCGAGTGCGAGGCCCTGA AGAAGACGCTCAACGGTGGCCTCGCGGTTACTGAGATTCAGGATGCTTGATTCACTTTTCATTCTGGGTTCGCAT AGTTACATCCGCTCACAAACTTCTTCCATCGGGCTTCTTTTTATAACCATAGAGACTTTGACTCTAATTTACAGC GTCAGTATTAATTGGTTCATTAATATCTCCTACTCCTTCTACTTATTGCTCTGTCTTGACAGGGCGCGGCAGCTT TTTATTTTCTTATTTGGCTTCATTTTATTCTCTTATCTAACGACCTCGTCATGCTTCCTATACCCACCGCACTCC CATGCAGACATGCAACATTTCTTATGGCACTTTGGATCACTCCATGTATCACACTTCTTTCTGTACTTATCCAAT TCTATGCCTTATGCCCACGC |
Length | 1820 |