CopciAB_504283
Coprinopsis cinerea A43mutB43mut pab1-1 #326

General data

Systematic name CopciAB_504283 Strain Coprinopsis cinerea Okayama 7
Standard name - Synonyms 504283
Uniprot id Functional description Aryl-alcohol oxidase
Location scaffold_11:740431..741364 Strand -
Gene length (nt) 934 Transcript length (nt) 675
CDS length (nt) 675 Protein length (aa) 224

Reciprocal best hits in model fungi

Strain name Gene / Protein name

Orthologs in mushroom models

Strain name Gene / Protein name Pident E-value Bits
0

Expression

Name Summary Attribution Assay type
Carbon metabolism Transcriptional changes along alternative morphogenetic paths of C. cinerea Xie et al. 2020 RNA-Seq
Sample Mean cpm SD cpm Se of mean
sclerotia 0 0 0
oidia 0 0 0
vegetative_mycelium 0.0945 0.0833 0.0481
primordia 0.047 0.0407 0.0235
hyphal_knot 0 0 0
young_fruiting_body 0.1343 0.1331 0.0769
Complex carbon sources 1 (long incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control - glucose 0.0418 0.0725 0.0418
Wheat bran 0 0 0
Horse manure 0.0268 0.0465 0.0268
Oak leaves 0 0 0
Hay 0 0 0
Corn stalk 0 0 0
Pectine 0.0549 0.0487 0.0281
Microcrystalline cellulose 0.0181 0.0314 0.0181
Xylose 0 0 0
Cellobiose 0.0442 0.0395 0.0228
Lignin 0 0 0
Apple peels 0 0 0
Coprinopsis challenged with bacteria Transcriptional response to Bacillus subtilis and Escherichia coli. Kombrink et al. 2018 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control 0.0157 0.0271 0.0157
Bsubtilis 0 0 0
Ecoli 0.0166 0.0288 0.0166
Early development 1 Time series expression profiling of basidiospore and oidium germination Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
BS 0h 0.0499 0.0865 0.0499
BS 4h 0 0 0
BS 8h 0.0192 0.0332 0.0192
BS 12h 0.0053 0.0092 0.0053
Oidia 0 h 0 0 0
Oidia 18 h 0 0 0
Sclerotia 0 0 0
Early development 2 Time series expression profiling of mycelial growth, light induction and fruiting body initiation. Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
DM 12h 0.0504 0.0873 0.0504
DM 36h 0.0451 0.0781 0.0451
DM 60h 0 0 0
DM 84h 0 0 0
DM 108h 0 0 0
DM 132h 0 0 0
DM 156hAE 0 0 0
ELI1hAE 0 0 0
ELI2hAE 0 0 0
LI2hAE 0 0 0
LI6hAE 0 0 0
LI12hAE 0 0 0
LI18hAE 0 0 0
LI 24hAE 0 0 0
DM 156hAM 0 0 0
ELI1hAM 0 0 0
ELI2hAM 0 0 0
LI2hAM 0 0 0
LI6hAM 0 0 0
LI12hAM 0 0 0
LI18hAM 0 0 0
LI 24hAM 0 0 0
LI 24hHK 0 0 0
L/D 6h 0 0 0
L/D 12h 0 0 0
L/D 18h 0 0 0
L/D 24h 0 0 0
Fruiting body development RNA-Seq analysis of fruiting body development Krizsan et al. 2019 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Vegetative mycelium 0.0473 0.0431 0.0249
Hyphal knots 0.0363 0.0378 0.0218
Primordium 1 0.0268 0.0254 0.0147
Primordium 2 0.0375 0.065 0.0375
Young Fruiting body cap 0.0749 0.0296 0.0171
Younf fruiting body gill 0.1209 0.0663 0.0383
Young fruiting body stipe 0.0248 0.0238 0.0138
Mature fruiting body cap_gill 0.1001 0.1176 0.0679
Mature fruiting body stipe 0.0675 0.0629 0.0363
Nitrogen sources (12h incubation) Expression profiling on diverse nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Complete medium - control 0.0938 0.1624 0.0938
NH4NO3 0 0 0
Proline 0 0 0
Tryptophan 0 0 0
Isoleucin 0 0 0
Arginine 0 0 0
Metionine 0 0 0
NaNO3 0 0 0
Plant biomass (12h incubation) Expression profiling on diverse plant biomasses as carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 0.0938 0.1624 0.0938
Citrus peel 0.1078 0.0516 0.0298
Poplar leaves 0.018 0.0313 0.018
Typha leaves 0.034 0.0588 0.034
Overwintered Salix leaves 0 0 0
Reed flowering 0.0204 0.0353 0.0204
Tigernut 0 0 0
Energy cane 0.0233 0.0404 0.0233
Guar gum 0 0 0
Apple peels 0.0168 0.029 0.0168
Cellobiose 0 0 0
Corn stalk 0 0 0
Horse manure 0 0 0
Lignin 0 0 0
Microcrystalline cellulose 0 0 0
Oak leaves 0.0189 0.0327 0.0189
Pectin esterified 0.0979 0.0955 0.0551
Poplar sawdust 0 0 0
Wheat bran 0 0 0
Chlamydomonas reinhardtii 0 0 0
Vertatryl alcohol 0.0171 0.0296 0.0171
Furfural 0.0215 0.0372 0.0215
Autoclaved mycelium 0.0356 0.0308 0.0178
Simple and complex carbon and nitrogen sources Expression profiling on diverse complex carbon and nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 0.0729 0.087 0.0502
Ribose 0.0579 0.0504 0.0291
Mannose 0 0 0
Fructose 0.0368 0.032 0.0185
Arabinose 0.0761 0.1318 0.0761
Xylose 0.1077 0.0494 0.0285
Galacturonic acid 0.0224 0.0388 0.0224
Rhamnogalacturonan 0.0258 0.0447 0.0258
Pectin esterified 0.0433 0.075 0.0433
Polygalacturonic acid 0.0453 0.0785 0.0453
Sodium acetate 0.0296 0.0513 0.0296
No nitrogen 0 0 0
BSA 0.0314 0.0544 0.0314
Glutamine 0.0256 0.0443 0.0256
No phosphate 0.154 0.1405 0.0811
No carbon 0 0 0
No sulphur 0.0324 0.0561 0.0324
Simple and complex carbon sources (12h incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 0.0938 0.1624 0.0938
Amylose 0 0 0
Fucose 0 0 0
Galactose 0.013 0.0225 0.013
Lactose 0 0 0
Maltose 0 0 0
Mannitol 0.0156 0.027 0.0156
Rhamnose 0 0 0
Sorbitol 0.0128 0.0221 0.0128
Trehalose 0 0 0
Glycerol 0 0 0
Glucuronic acid 0 0 0
Arabinan 0 0 0
Galactan 0 0 0
Galactomannan 0 0 0
Glucan 0 0 0
Xylan 0 0 0
Xyloglucan 0.0162 0.0281 0.0162
Arabinogalactan 0 0 0
Pectin 0 0 0
Rhamnogalacturonan 0 0 0
Polygalacturonic acid 0 0 0
Mannan 0 0 0
Amylopectin 0 0 0
Inulin 0 0 0
BSA 0.0274 0.0475 0.0274
Starvation induced by water agar transfer Expression profiling on starvation induced by transfer to water agar Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Control 0 0 0
2h WAT 0 0 0
4h WAT 0 0 0
8h WAT 0 0 0
16h WAT 0 0 0
24h WAT 0 0 0
WAT hyphal knot -30h 0.0097 0.0168 0.0097
WAT hyphal knot -22h 0 0 0
WAT hyphal knot -15h 0.0069 0.0119 0.0069
WAT hyphal knot -7.5h 0 0 0
WAT hyphal knot 0 0 0
WAT hyphal knot +7.5h 0.0148 0.0256 0.0148
Straw time series Time series expression profiling on straw as a carbon source Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 0 0 0
Straw 3h 0.0171 0.0296 0.0171
Straw 6h 0.0343 0.0594 0.0343
Straw 12h 0.0825 0.1429 0.0825
Straw 24h 0 0 0
Stress conditions 1 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 0 0 0
Frost (-20C, 30min) 0.041 0.071 0.041
Heat shock (47C, 2h) 0.011 0.0191 0.011
High CO2 0 0 0
Drought (4% agar, 12h) 0.0408 0.0707 0.0408
Oxidative (1mM H2O2, 3h) 0 0 0
Acidic (pH4, 3h) 0 0 0
Alkaline (pH9, 3h) 0.0043 0.0075 0.0043
Osmotic (sorbitol 2h) 0 0 0
CongoRed (3h) 0 0 0
Cobalt chloride control 0 0 0
Cobalt chloride 2mM 0 0 0
Stress conditions 2 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 0 0 0
Cold stimulation 0 0 0
Scratched surface 0 0 0
Ca2+, 200mM, 24h 0 0 0
Cu2+, 2mM, 6h 0 0 0
Voriconazole 0 0 0
Trichoderma interaction, early 0 0 0
Trichoderma interaction 60h 0 0 0
Cobalt chloride 2mM repeat 0 0 0
Hypoxia 0.049 0.0849 0.049
Hypoxia control 0 0 0
Protoplastation control 0 0 0
Protoplastation 3.5h 0.0204 0.0289 0.0204
Protoplastation 1.5h 0 0 0

General data

Systematic name -
Protein id CopciAB_504283.T0
Description Aryl-alcohol oxidase

Annotation summary

0 100 200 224

Conserved domains

Analysis Signature accession Signature description InterPro Accession Start End
Pfam PF00732 GMC oxidoreductase IPR000172 33 219

SignalP

Prediction Start End Score
SP(Sec/SPI) 1 19 0.9988

Transmembrane domains

Domain n Start End Length
No records

InterPro

Accession Description
IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal
IPR036188 FAD/NAD(P)-binding domain superfamily
IPR012132 Glucose-methanol-choline oxidoreductase

GO

Go id Term Ontology
GO:0016614 oxidoreductase activity, acting on CH-OH group of donors MF
GO:0050660 flavin adenine dinucleotide binding MF

KEGG

KEGG Orthology
K00108

EggNOG

COG category Description
E Aryl-alcohol oxidase

CAZy

Class Family Subfamily
AA AA3 AA3_2

Transcription factor

Group
No records

Conservation of CopciAB_504283 across fungi.

Arrow shows the origin of gene family containing CopciAB_504283.

Protein

Sequence id CopciAB_504283.T0
Sequence >CopciAB_504283.T0
MNRISALALLVCLALPAFATIQDSITKFPKTDYDFVIVGGGQAGCVVANRLTENPRFNVLVIEAGPSHENVLNAQ
VPGFSLELRNTTYDYNYTSTPVPHLNNRVFSVTRGRILGGCSSHNGMFYTRGSSSDYDRWATVTGDPGWSWKKLF
PYILKNERWVKPNRDVDITGMYDPKVHNTKGMTFVSLTNFPDDSDAKIRQAADEIGGDFGWNVDYNSGDPLGVG
Length 224

Coding

Sequence id CopciAB_504283.T0
Sequence >CopciAB_504283.T0
ATGAACCGCATCTCGGCACTCGCTCTTCTGGTTTGTCTCGCTCTTCCAGCTTTCGCGACGATTCAGGACTCCATT
ACCAAGTTCCCCAAAACTGACTACGACTTTGTAATAGTCGGAGGAGGCCAGGCGGGATGCGTAGTGGCTAACAGA
CTAACGGAAAACCCTCGATTCAACGTCCTGGTCATCGAGGCAGGCCCGAGCCACGAGAACGTCTTGAACGCGCAA
GTACCGGGGTTTAGTCTTGAACTCCGAAATACCACCTACGATTACAACTACACGAGTACACCTGTACCGCATCTC
AACAACCGAGTTTTTTCGGTGACCCGTGGGCGGATTCTGGGGGGCTGTAGCTCGCACAATGGGATGTTCTACACC
CGTGGTTCTTCCTCTGACTATGATCGATGGGCTACCGTCACCGGTGACCCAGGGTGGTCTTGGAAGAAACTCTTT
CCCTACATTCTCAAGAACGAACGTTGGGTTAAGCCAAATCGCGATGTGGATATCACAGGGATGTACGACCCAAAG
GTCCACAACACCAAGGGGATGACCTTTGTCAGCCTCACGAACTTCCCAGACGATTCCGATGCAAAGATCAGGCAG
GCTGCAGACGAAATTGGAGGCGATTTCGGATGGAACGTGGATTACAATAGTGGGGATCCCTTGGGTGTCGGATAA
Length 675

Transcript

Sequence id CopciAB_504283.T0
Sequence >CopciAB_504283.T0
ATGAACCGCATCTCGGCACTCGCTCTTCTGGTTTGTCTCGCTCTTCCAGCTTTCGCGACGATTCAGGACTCCATT
ACCAAGTTCCCCAAAACTGACTACGACTTTGTAATAGTCGGAGGAGGCCAGGCGGGATGCGTAGTGGCTAACAGA
CTAACGGAAAACCCTCGATTCAACGTCCTGGTCATCGAGGCAGGCCCGAGCCACGAGAACGTCTTGAACGCGCAA
GTACCGGGGTTTAGTCTTGAACTCCGAAATACCACCTACGATTACAACTACACGAGTACACCTGTACCGCATCTC
AACAACCGAGTTTTTTCGGTGACCCGTGGGCGGATTCTGGGGGGCTGTAGCTCGCACAATGGGATGTTCTACACC
CGTGGTTCTTCCTCTGACTATGATCGATGGGCTACCGTCACCGGTGACCCAGGGTGGTCTTGGAAGAAACTCTTT
CCCTACATTCTCAAGAACGAACGTTGGGTTAAGCCAAATCGCGATGTGGATATCACAGGGATGTACGACCCAAAG
GTCCACAACACCAAGGGGATGACCTTTGTCAGCCTCACGAACTTCCCAGACGATTCCGATGCAAAGATCAGGCAG
GCTGCAGACGAAATTGGAGGCGATTTCGGATGGAACGTGGATTACAATAGTGGGGATCCCTTGGGTGTCGGATAA
Length 675

Gene

Sequence id CopciAB_504283.T0
Sequence >CopciAB_504283.T0
ATGAACCGCATCTCGGCACTCGCTCTTCTGGTTTGTCTCGCTCTTCCAGCTTTCGCGACGATTCAGGACTCCATT
ACCAAGTTCCCCAAAACTGACTACGACTTTGTAATAGTCGGAGGTGCGTACAGTATCCACCGTGCCTTGCACCCT
TTGTCCTCACCCATCGTCTTCCAGGAGGCCAGGCGGGATGCGTAGTGGCTAACAGACTAACGGAAAACCCTCGAT
TCAACGTCCTGGTCATCGAGGCAGGCCCGAGGTTTGTTGTTCATCTCGATGAGTCTACTCGAACGAACTTACTGG
CCATTCATTAATATTCATTCTGAATCCTCCAGCCACGAGAACGTCTTGAACGCGCAAGTACCGGGGTTTAGTCTT
GAACTCCGAAATACCACCTACGATTACAACTACACGAGTACACCTGTACCGCATCTCAACAACCGAGTTTTTTCG
GTGACCCGTGGGCGGATTCTGGGGGGCTGTAGCTCGCACAGTGAGAATTCAATGGCTCGGCTTGTTTTGAAATTC
CGTATTCACCAACCTCGTCGATTGTAGATGGGATGTTCTACACCCGTGGTTCTTCCTCTGACTATGATCGATGGG
CTACCGTCACCGGTGACCCAGGGTGGTCTTGGAAGAAACTCTTTCCCTACATTCTCAAGGTCAGCACGTTGATGT
TTTTTTTTGGAAGTCGTGCCGTCAGCACTAACACAACGCCGTTATCCAGAACGAACGTTGGGTTAAGCCAAATCG
CGATGTGGATATCACAGGGATGTACGACCCAAAGGTCCACAACACCAAGGGGATGACCTTTGTCAGCCTCACGAA
CTTCCCAGACGATTCCGATGCAAAGATCAGGCAGGCTGCAGACGAAATTGGAGGCGATTTCGGATGGAACGTGGA
TTACAATAGTGGGGATCCCTTGGGTGTCGGATAA
Length 934